Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008586

Physical Location & Seq

Genomic Coordinates Forward (+)

5514717 .. 5517153

Gene Structure 2437 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G16770.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGGGCGATCACCATGTTGCGATGAGAATGGTCTAAAGAAAGGGCCATGGACACAAGAGGAGGATGATAAACTGATAGATCACATTCAAAAACATGGCCATGGCAGCTGGAGAGCTCTTCCAAAGCAAGCCGGTTTAAACCGATGCGGAAAGAGTTGTAGATTAAGATGGACCAACTACTTGAGACCTGACATCAAGAGAGGAAATTTCACTGAAGAGGAAGAACAAACTATTATCAACCTCCATTCCCTTCTTGGAAACAAGTGGTCGTCGATAGCCGGTAATCTTCCTGGAAGAACGGACAATGAAATAAAAAACTATTGGAACACACATTTGAGAAAGAAACTTCTCCAAATGGGGATTGATCCGGTGACCCATAGGCCAAGAACCGACCATCTAAACGTTTTAGCAGCTCTCCCGCAGCTTATAGCCGCCGCAAATTTCAACAGCCTCTTGAATCTCAACCAAAATGTGCAACTGGATGCAACAACTCTTGCTAAAGCTCAACTGCTACACACTATGATTCAAGTCCTTAGCACCAATAACAACACCACCAATCCTTCTTTTTCTTCATCAACTATGCAAAACAGTAACACCAATCTCTTTGGCCAAGCTTCTTACTTAGAGAACCAAAATCTTTTTGGTCAGTCTCAAAACTTCTCTCACATTCTTGAGGATGAGAATTTGATGGTCAAAACCCAAATTATTGATAACCCTTTGGACTCTTTTTCTTCCCCCATACAACCCGGTTTTCAAGATGATCATAATTCACTCCCTCTATTGGTTCCGGCGTCTCCTGAAGAATCTAAAGAAACTCAAAGGATGATCAAGAACAAAGACATCGTCGATTACCATCATCATGATGCTTCAAACCCTTCATCATCAAACTCAACGTTTACACAAGATCATCATCACCCATGGTGTGACACTATTGATGATGGAGCAAGTGATTCTTTTTGGAAAGAGATAATAGAGCAAACTTGTTCGGAACCATGGCCATTTCCTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

336

Amino Acids

38.08

Weight (kDa)

5.78

Isoelectric Point (pI)

44.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	6.6e-18	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 77	3.8e-14	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 112	1.2e-18	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	70 - 115	5.7e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008586)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02940 AT3G02940 AT3G02940 AT5G16770 AT5G16770 AT5G16770 AT5G16770
fragaria_vesca	FvH4_5g22510
malus_domestica	MD06G1037300.v1.1 MD16G1271400.v1.1
prunus_persica	Prupe.5G031700_v2.0.a1
pyrus_communis	pycom06g03080 pycom16g24100
rosa_chinensis	RchiOBHm_Chr7g0210281
rosa_laevigata	RLG00000003052
rosa_multiflora	Rmu_sc0003639.1_g000007 Rmu_sc0007188.1_g000001
rosa_roxburghii	Rroxscaffold_3G00248460
rosa_rugosa	Rorug07G0120400
rosa_samantha	Rh7AG253300 Rh7CG270200 Rh7DG260900
rosa_wichuraiana	Rw7G021590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	147, 419, 432, 435
AclI	AACGTT	2 cut(s)	402, 893
AclWI	GGATC	1 cut(s)	359
AcoI	YGGCCR	3 cut(s)	97, 607, 995
AcsI	RAATTY	3 cut(s)	205, 439, 682
AcuI	CTGAAG	2 cut(s)	234, 819
AcyI	GRCGYC	1 cut(s)	791
AfiI	CCNNNNNNNGG	1 cut(s)	781
AgsI	TTSAA	6 cut(s)	89, 445, 457, 527, 755, 870
AjnI	CCWGG	1 cut(s)	289
AluBI	AGCT	6 cut(s)	108, 116, 413, 424, 503, 614
AluI	AGCT	6 cut(s)	108, 116, 413, 424, 503, 614
Alw21I	GWGCWC	1 cut(s)	118
Alw26I	GTCTC	3 cut(s)	178, 654, 798
AlwI	GGATC	1 cut(s)	359
AoxI	GGCC	5 cut(s)	44, 97, 380, 607, 995
ApeKI	GCWGC	3 cut(s)	105, 410, 421
ApoI	RAATTY	3 cut(s)	205, 439, 682
ArsI	GACNNNNNNTTYG	2 cut(s)	828, 860
AspS9I	GGNCC	2 cut(s)	44, 171
AsuC2I	CCSGG	1 cut(s)	747
AsuHPI	GGTGA	3 cut(s)	3, 382, 905
AvaII	GGWCC	1 cut(s)	171
BalI	TGGCCA	3 cut(s)	99, 609, 997
BanII	GRGCYC	1 cut(s)	118
Bbv12I	GWGCWC	1 cut(s)	118
BbvI	GCAGC	3 cut(s)	117, 422, 433
BccI	CCATC	5 cut(s)	162, 402, 682, 861, 932
BciT130I	CCWGG	1 cut(s)	291
BclI	TGATCA	2 cut(s)	760, 825
BcnI	CCSGG	1 cut(s)	747
BcoDI	GTCTC	3 cut(s)	178, 654, 798
BisI	GCNGC	5 cut(s)	106, 411, 422, 432, 435
BlsI	GCNGC	5 cut(s)	107, 412, 423, 433, 436
Bme1390I	CCNGG	2 cut(s)	291, 747
Bme18I	GGWCC	1 cut(s)	171
BmgT120I	GGNCC	2 cut(s)	44, 171
BmiI	GGNNCC	2 cut(s)	786, 990
BmrFI	CCNGG	2 cut(s)	291, 747
BmsI	GCATC	3 cut(s)	134, 472, 853
BpmI	CTGGAG	1 cut(s)	130
Bpu10I	CCTNAGC	1 cut(s)	533
BpuEI	CTTGAG	2 cut(s)	202, 692
BpuMI	CCSGG	1 cut(s)	747
BsaBI	GATNNNNATC	2 cut(s)	852, 909
BsaHI	GRCGYC	1 cut(s)	791
BsaI	GGTCTC	1 cut(s)	178
BsaJI	CCNNGG	4 cut(s)	47, 100, 917, 992
BsaWI	WCCGGW	1 cut(s)	367
Bsc4I	CCNNNNNNNGG	1 cut(s)	781
Bse118I	RCCGGY	2 cut(s)	131, 278
Bse1I	ACTGG	1 cut(s)	483
Bse8I	GATNNNNATC	2 cut(s)	852, 909
BseBI	CCWGG	1 cut(s)	291
BseDI	CCNNGG	4 cut(s)	47, 100, 917, 992
BseGI	GGATG	4 cut(s)	70, 487, 682, 828
BseJI	GATNNNNATC	2 cut(s)	852, 909
BseLI	CCNNNNNNNGG	1 cut(s)	781
BseNI	ACTGG	1 cut(s)	483
BseRI	GAGGAG	1 cut(s)	74
BseXI	GCAGC	3 cut(s)	117, 422, 433
BshFI	GGCC	5 cut(s)	46, 99, 382, 609, 997
BsiHKAI	GWGCWC	1 cut(s)	118
BsiSI	CCGG	5 cut(s)	132, 279, 368, 747, 788
BslI	CCNNNNNNNGG	1 cut(s)	781
BsmAI	GTCTC	3 cut(s)	178, 654, 798
BsmBI	CGTCTC	1 cut(s)	798
BsnI	GGCC	5 cut(s)	46, 99, 382, 609, 997
Bso31I	GGTCTC	1 cut(s)	178
Bsp1286I	GDGCHC	1 cut(s)	118
Bsp143I	GATC	6 cut(s)	8, 79, 364, 760, 825, 904
Bsp19I	CCATGG	4 cut(s)	47, 100, 917, 992
BspACI	CCGC	4 cut(s)	147, 419, 432, 435
BspANI	GGCC	5 cut(s)	46, 99, 382, 609, 997
BspHI	TCATGA	1 cut(s)	859
BspLI	GGNNCC	2 cut(s)	786, 990
BspPI	GGATC	1 cut(s)	359
BspQI	GCTCTTC	1 cut(s)	123
BspTNI	GGTCTC	1 cut(s)	178
BsrFI	RCCGGY	2 cut(s)	131, 278
BsrI	ACTGG	1 cut(s)	483
BssAI	RCCGGY	2 cut(s)	131, 278
BssECI	CCNNGG	4 cut(s)	47, 100, 917, 992
BssMI	GATC	6 cut(s)	8, 79, 364, 760, 825, 904
BssNI	GRCGYC	1 cut(s)	791
BssT1I	CCWWGG	4 cut(s)	47, 100, 917, 992
Bst2UI	CCWGG	1 cut(s)	291
Bst4CI	ACNGT	1 cut(s)	590
Bst6I	CTCTTC	2 cut(s)	123, 210
BstACI	GRCGYC	1 cut(s)	791
BstC8I	GCNNGC	1 cut(s)	129
BstDEI	CTNAG	2 cut(s)	533, 622
BstDSI	CCRYGG	4 cut(s)	47, 100, 917, 992
BstEII	GGTNACC	1 cut(s)	370
BstF5I	GGATG	4 cut(s)	70, 487, 682, 828
BstKTI	GATC	6 cut(s)	11, 82, 367, 763, 828, 907
BstMAI	GTCTC	3 cut(s)	178, 654, 798
BstMBI	GATC	6 cut(s)	8, 79, 364, 760, 825, 904
BstMWI	GCNNNNNNNGC	1 cut(s)	105
BstNI	CCWGG	1 cut(s)	291
BstPI	GGTNACC	1 cut(s)	370
BstSCI	CCNGG	2 cut(s)	289, 745
BstV1I	GCAGC	3 cut(s)	117, 422, 433
BsuRI	GGCC	5 cut(s)	46, 99, 382, 609, 997
BtgI	CCRYGG	4 cut(s)	47, 100, 917, 992
BtgZI	GCGATG	1 cut(s)	36
BtsCI	GGATG	4 cut(s)	70, 487, 682, 828
BtsIMutI	CAGTG	1 cut(s)	210
Cac8I	GCNNGC	1 cut(s)	129
CciI	TCATGA	1 cut(s)	859
Cfr10I	RCCGGY	2 cut(s)	131, 278
Cfr13I	GGNCC	2 cut(s)	44, 171
CseI	GACGC	1 cut(s)	780
CviAII	CATG	7 cut(s)	15, 48, 95, 101, 860, 918, 993
DdeI	CTNAG	2 cut(s)	533, 622
DpnI	GATC	6 cut(s)	10, 81, 366, 762, 827, 906
DpnII	GATC	6 cut(s)	8, 79, 364, 760, 825, 904
DraI	TTTAAA	1 cut(s)	138
EaeI	YGGCCR	3 cut(s)	97, 607, 995
Eam1104I	CTCTTC	2 cut(s)	123, 210
EarI	CTCTTC	2 cut(s)	123, 210
Ecl136II	GAGCTC	1 cut(s)	116
Eco130I	CCWWGG	4 cut(s)	47, 100, 917, 992
Eco24I	GRGCYC	1 cut(s)	118
Eco31I	GGTCTC	1 cut(s)	178
Eco47I	GGWCC	1 cut(s)	171
Eco53kI	GAGCTC	1 cut(s)	116
Eco57I	CTGAAG	2 cut(s)	234, 819
Eco91I	GGTNACC	1 cut(s)	370
EcoICRI	GAGCTC	1 cut(s)	116
EcoO65I	GGTNACC	1 cut(s)	370
EcoRII	CCWGG	1 cut(s)	289
EcoT14I	CCWWGG	4 cut(s)	47, 100, 917, 992
EcoT38I	GRGCYC	1 cut(s)	118
ErhI	CCWWGG	4 cut(s)	47, 100, 917, 992
Esp3I	CGTCTC	1 cut(s)	798
FaeI	CATG	7 cut(s)	18, 51, 98, 104, 863, 921, 996
FalI	AAGNNNNNCTT	2 cut(s)	937, 969
FatI	CATG	7 cut(s)	14, 47, 94, 100, 859, 917, 992
FauI	CCCGC	1 cut(s)	426
FbaI	TGATCA	2 cut(s)	760, 825
Fnu4HI	GCNGC	5 cut(s)	106, 411, 422, 432, 435
FokI	GGATG	4 cut(s)	77, 494, 689, 835
FriOI	GRGCYC	1 cut(s)	118
Fsp4HI	GCNGC	5 cut(s)	106, 411, 422, 432, 435
GluI	GCNGC	5 cut(s)	106, 411, 422, 432, 435
GsuI	CTGGAG	1 cut(s)	130
HaeIII	GGCC	5 cut(s)	46, 99, 382, 609, 997
HapII	CCGG	5 cut(s)	132, 279, 368, 747, 788
HgaI	GACGC	1 cut(s)	780
Hin1I	GRCGYC	1 cut(s)	791
Hin1II	CATG	7 cut(s)	18, 51, 98, 104, 863, 921, 996
HindIII	AAGCTT	1 cut(s)	612
HinfI	GANTC	5 cut(s)	457, 523, 722, 803, 950
HpaII	CCGG	5 cut(s)	132, 279, 368, 747, 788
HphI	GGTGA	3 cut(s)	3, 382, 905
Hpy166II	GTNNAC	1 cut(s)	897
Hpy188I	TCNGA	1 cut(s)	988
Hpy188III	TCNNGA	8 cut(s)	196, 454, 671, 755, 797, 829, 860, 1004
Hpy8I	GTNNAC	1 cut(s)	897
Hpy99I	CGWCG	2 cut(s)	274, 848
HpyAV	CCTTC	3 cut(s)	260, 570, 885
HpyCH4III	ACNGT	1 cut(s)	590
HpyCH4IV	ACGT	2 cut(s)	402, 893
HpyCH4V	TGCA	3 cut(s)	475, 485, 583
HpyF10VI	GCNNNNNNNGC	1 cut(s)	105
HpyF3I	CTNAG	2 cut(s)	533, 622
HpySE526I	ACGT	2 cut(s)	402, 893
Hsp92I	GRCGYC	1 cut(s)	791
Hsp92II	CATG	7 cut(s)	18, 51, 98, 104, 863, 921, 996
Ksp22I	TGATCA	2 cut(s)	760, 825
Kzo9I	GATC	6 cut(s)	8, 79, 364, 760, 825, 904
LguI	GCTCTTC	1 cut(s)	123
LmnI	GCTCC	1 cut(s)	941
Lsp1109I	GCAGC	3 cut(s)	117, 422, 433
LweI	GCATC	3 cut(s)	134, 472, 853
MaeII	ACGT	2 cut(s)	402, 893
MaeIII	GTNAC	3 cut(s)	370, 590, 923
MalI	GATC	6 cut(s)	10, 81, 366, 762, 827, 906
MboI	GATC	6 cut(s)	8, 79, 364, 760, 825, 904
MboII	GAAGA	8 cut(s)	110, 227, 233, 278, 306, 561, 723, 812
MhlI	GDGCHC	1 cut(s)	118
MlsI	TGGCCA	3 cut(s)	99, 609, 997
MluCI	AATT	5 cut(s)	205, 439, 682, 702, 766
MluNI	TGGCCA	3 cut(s)	99, 609, 997
MlyI	GAGTC	1 cut(s)	716
MnlI	CCTC	8 cut(s)	52, 55, 194, 211, 251, 461, 667, 786
Mox20I	TGGCCA	3 cut(s)	99, 609, 997
MscI	TGGCCA	3 cut(s)	99, 609, 997
MseI	TTAA	2 cut(s)	137, 164
MslI	CAYNNNNRTG	3 cut(s)	99, 858, 861
Msp20I	TGGCCA	3 cut(s)	99, 609, 997
MspA1I	CMGCKG	1 cut(s)	108
MspI	CCGG	5 cut(s)	132, 279, 368, 747, 788
MspR9I	CCNGG	2 cut(s)	291, 747
MssI	GTTTAAAC	1 cut(s)	138
MvaI	CCWGG	1 cut(s)	291
MwoI	GCNNNNNNNGC	1 cut(s)	105
NciI	CCSGG	1 cut(s)	747
NcoI	CCATGG	4 cut(s)	47, 100, 917, 992
NdeII	GATC	6 cut(s)	8, 79, 364, 760, 825, 904
NlaIII	CATG	7 cut(s)	18, 51, 98, 104, 863, 921, 996
NlaIV	GGNNCC	2 cut(s)	786, 990
NmuCI	GTSAC	2 cut(s)	370, 923
PagI	TCATGA	1 cut(s)	859
PciSI	GCTCTTC	1 cut(s)	123
PfeI	GAWTC	4 cut(s)	457, 523, 803, 950
PflFI	GACNNNGTC	1 cut(s)	842
PfoI	TCCNGGA	1 cut(s)	289
PkrI	GCNGC	5 cut(s)	107, 412, 423, 433, 436
PleI	GAGTC	1 cut(s)	716
PmeI	GTTTAAAC	1 cut(s)	138
PpsI	GAGTC	1 cut(s)	716
Psp124BI	GAGCTC	1 cut(s)	118
Psp1406I	AACGTT	2 cut(s)	402, 893
Psp6I	CCWGG	1 cut(s)	289
PspEI	GGTNACC	1 cut(s)	370
PspGI	CCWGG	1 cut(s)	289
PspN4I	GGNNCC	2 cut(s)	786, 990
PspPI	GGNCC	2 cut(s)	44, 171
PsyI	GACNNNGTC	1 cut(s)	842
PvuII	CAGCTG	1 cut(s)	108
RseI	CAYNNNNRTG	3 cut(s)	99, 858, 861
SacI	GAGCTC	1 cut(s)	118
SapI	GCTCTTC	1 cut(s)	123
SaqAI	TTAA	2 cut(s)	137, 164
SatI	GCNGC	5 cut(s)	106, 411, 422, 432, 435
Sau3AI	GATC	6 cut(s)	8, 79, 364, 760, 825, 904
Sau96I	GGNCC	2 cut(s)	44, 171
SchI	GAGTC	1 cut(s)	716
ScrFI	CCNGG	2 cut(s)	291, 747
SduI	GDGCHC	1 cut(s)	118
SfaNI	GCATC	3 cut(s)	134, 472, 853
SinI	GGWCC	1 cut(s)	171
SmiMI	CAYNNNNRTG	3 cut(s)	99, 858, 861
SmlI	CTYRAG	2 cut(s)	181, 671
SmoI	CTYRAG	2 cut(s)	181, 671
Sse9I	AATT	5 cut(s)	205, 439, 682, 702, 766
SsiI	CCGC	4 cut(s)	147, 419, 432, 435
SstI	GAGCTC	1 cut(s)	118
StyD4I	CCNGG	2 cut(s)	289, 745
StyI	CCWWGG	4 cut(s)	47, 100, 917, 992
TaaI	ACNGT	1 cut(s)	590
TaiI	ACGT	2 cut(s)	405, 896
TaqI	TCGA	2 cut(s)	272, 846
TasI	AATT	5 cut(s)	205, 439, 682, 702, 766
TauI	GCSGC	2 cut(s)	434, 437
TfiI	GAWTC	4 cut(s)	457, 523, 803, 950
Tru1I	TTAA	2 cut(s)	137, 164
Tru9I	TTAA	2 cut(s)	137, 164
TscAI	CASTG	1 cut(s)	217
TseFI	GTSAC	2 cut(s)	370, 923
TseI	GCWGC	3 cut(s)	105, 410, 421
Tsp45I	GTSAC	2 cut(s)	370, 923
TspDTI	ATGAA	3 cut(s)	321, 561, 867
TspGWI	ACGGA	1 cut(s)	314
TspRI	CASTG	1 cut(s)	217
Tth111I	GACNNNGTC	1 cut(s)	842
VpaK11BI	GGWCC	1 cut(s)	171
XapI	RAATTY	3 cut(s)	205, 439, 682
XcmI	CCANNNNNNNNNTGG	2 cut(s)	251, 638

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.