Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0008586

Physical Location & Seq

Genomic Coordinates Reverse (-)

3897433 .. 3898620

Gene Structure 1188 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g03080.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGGTTAGAGCCCCTTGTTGTGATGAAGAGAGCAGTTTGAAGAAAGGTCCCTGGACAACCGAAGAAGATGCAAAATTGATGGATTATATTAGCAGAAATGGCCATGGAAGCTGGAGAGCTCTCCCCAAGCTTGCTGGCCTCAACAGGTGTGGCAAGAGTTGCAGATTAAGGTGGACAAATTACCTGAGGCCTGATATTAAGAGAGGAAAGTTCTCCGAAGAGGAAGAAAGAGTTATCATCAATCTTCATTCAGTTCTTGGAAACAAGTATGTGTACTTCGCTTGTTCTTTCAGGTGGTCAAAGATTGCAACTCATCTTCCAGGGAGAACCGATAACGAAATCAAGAACTATTGGAACACCCAACTGAGAAAGAAGCTCCTGCACATGGGGATTGATCCAAACACGCACAAGCCAAGGACTGACCTCAATCAGCTCCTCGACCTTACAAAGTTGCTCAGTGCGGCAAGTGTTGGCAACTCGAACATGATGACTAGTCTTTGGGACAATGCCCTGAAGCTGAAAGCAGCAGCAGGTGCTGCCCAACTTACCAAAATGCAGTTACTTCAACATTTATACATGATGCCGGTCGTGAGGACAAGTAATAGTAGTGTTCCTCCTAATAATTATAATGTAGACTTGATGAACCCTTCTAGTAGCCTTTTTGGTTCTCACATTCTTAATCCGATTGGAGGAGGACATGTGAGTGGAGCAAGTACCATGCTAAGTGGTCAAGAATGGAACCAGCAGGCAGATGTAGTCGATGGCTTCCACGCGATTTCTAACTCGTTAGAAGGATTTGAAGGTGGGTTTGGTGCACAAGGAGTTATTAGTAGCAACAGTCCTGATCAGGAGAACATGAGCAGTAGTTGCTGCTATGATGATATATATTTGCAGACCAAGAACCACCCACTTCCTGCATTAGTTTCATCATCATCAGTATATCCTGGGACTTCTTCTTCAGCAGCGAACCAAATGGAAATGAGCATGAGTGGTCCTGCAGCACCTGCGCGCATGGCCATCTTTGATGCTTGGGAGAAACTCTTGGATGATGAAACAAGTGAATCCTACTGGAAAGATATTCTAGAGTATGTTCTTGCAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

368

Amino Acids

40.65

Weight (kDa)

6.37

Isoelectric Point (pI)

46.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008586)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02940 AT3G02940 AT3G02940 AT5G16770 AT5G16770 AT5G16770 AT5G16770
fragaria_vesca	FvH4_5g22510
malus_domestica	MD06G1037300.v1.1 MD16G1271400.v1.1
prunus_persica	Prupe.5G031700_v2.0.a1
pyrus_communis	pycom06g03080 pycom16g24100
rosa_chinensis	RchiOBHm_Chr7g0210281
rosa_laevigata	RLG00000003052
rosa_multiflora	Rmu_sc0003639.1_g000007 Rmu_sc0007188.1_g000001
rosa_roxburghii	Rroxscaffold_3G00248460
rosa_rugosa	Rorug07G0120400
rosa_samantha	Rh7AG253300 Rh7CG270200 Rh7DG260900
rosa_wichuraiana	Rw7G021590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	627
AarI	CACCTGC	2 cut(s)	521, 1012
Acc36I	ACCTGC	2 cut(s)	521, 1012
AccI	GTMKAC	1 cut(s)	633
AccII	CGCG	2 cut(s)	773, 1009
AciI	CCGC	1 cut(s)	461
AclWI	GGATC	1 cut(s)	389
AcoI	YGGCCR	2 cut(s)	100, 1014
AcuI	CTGAAG	2 cut(s)	533, 942
AfaI	GTAC	2 cut(s)	275, 715
AfiI	CCNNNNNNNGG	2 cut(s)	385, 689
AflIII	ACRYGT	1 cut(s)	697
AgsI	TTSAA	3 cut(s)	40, 566, 800
AhlI	ACTAGT	1 cut(s)	491
AjnI	CCWGG	3 cut(s)	50, 319, 943
AjuI	GAANNNNNNNTTGG	2 cut(s)	792, 824
AluBI	AGCT	6 cut(s)	111, 119, 130, 376, 433, 517
AluI	AGCT	6 cut(s)	111, 119, 130, 376, 433, 517
Alw21I	GWGCWC	2 cut(s)	121, 817
Alw44I	GTGCAC	1 cut(s)	813
AlwI	GGATC	1 cut(s)	389
AlwNI	CAGNNNCTG	2 cut(s)	536, 1004
AoxI	GGCC	4 cut(s)	100, 136, 188, 1014
ApaLI	GTGCAC	1 cut(s)	813
ApeKI	GCWGC	6 cut(s)	524, 527, 536, 870, 962, 998
AspLEI	GCGC	2 cut(s)	1009, 1011
AspS9I	GGNCC	2 cut(s)	47, 992
AvaII	GGWCC	2 cut(s)	47, 992
AxyI	CCTNAGG	1 cut(s)	185
BaeGI	GKGCMC	1 cut(s)	817
BalI	TGGCCA	2 cut(s)	102, 1016
BanII	GRGCYC	2 cut(s)	13, 121
BarI	GAAGNNNNNNTAC	2 cut(s)	260, 292
Bbv12I	GWGCWC	2 cut(s)	121, 817
BbvI	GCAGC	6 cut(s)	523, 536, 539, 857, 974, 1010
BccI	CCATC	3 cut(s)	73, 755, 1025
BcgI	CGANNNNNNTGC	2 cut(s)	50, 84
BciT130I	CCWGG	3 cut(s)	52, 321, 945
BclI	TGATCA	1 cut(s)	844
BcuI	ACTAGT	1 cut(s)	491
BfaI	CTAG	3 cut(s)	492, 651, 1082
BfmI	CTRYAG	1 cut(s)	996
BfuAI	ACCTGC	2 cut(s)	521, 1012
BisI	GCNGC	7 cut(s)	462, 525, 528, 537, 871, 963, 999
BlsI	GCNGC	7 cut(s)	463, 526, 529, 538, 872, 964, 1000
Bme1390I	CCNGG	3 cut(s)	52, 321, 945
Bme18I	GGWCC	2 cut(s)	47, 992
BmgT120I	GGNCC	2 cut(s)	47, 992
BmiI	GGNNCC	2 cut(s)	49, 740
BmrFI	CCNGG	3 cut(s)	52, 321, 945
BmsI	GCATC	3 cut(s)	58, 570, 1015
BpmI	CTGGAG	1 cut(s)	133
BsaJI	CCNNGG	5 cut(s)	50, 103, 320, 413, 944
BsaXI	ACNNNNNCTCC	2 cut(s)	684, 714
Bsc4I	CCNNNNNNNGG	2 cut(s)	385, 689
Bse118I	RCCGGY	1 cut(s)	583
Bse1I	ACTGG	1 cut(s)	1073
Bse21I	CCTNAGG	1 cut(s)	185
BseBI	CCWGG	3 cut(s)	52, 321, 945
BseDI	CCNNGG	5 cut(s)	50, 103, 320, 413, 944
BseGI	GGATG	1 cut(s)	1051
BseLI	CCNNNNNNNGG	2 cut(s)	385, 689
BseMII	CTCAG	3 cut(s)	176, 356, 469
BseNI	ACTGG	1 cut(s)	1073
BsePI	GCGCGC	1 cut(s)	1007
BseRI	GAGGAG	2 cut(s)	425, 705
BseSI	GKGCMC	1 cut(s)	817
BseXI	GCAGC	6 cut(s)	523, 536, 539, 857, 974, 1010
BsgI	GTGCAG	1 cut(s)	365
Bsh1236I	CGCG	2 cut(s)	773, 1009
Bsh1285I	CGRYCG	1 cut(s)	588
BshFI	GGCC	4 cut(s)	102, 138, 190, 1016
BsiEI	CGRYCG	1 cut(s)	588
BsiHKAI	GWGCWC	2 cut(s)	121, 817
BsiSI	CCGG	1 cut(s)	584
BslFI	GGGAC	3 cut(s)	33, 515, 961
BslI	CCNNNNNNNGG	2 cut(s)	385, 689
BsmFI	GGGAC	3 cut(s)	33, 515, 961
BsnI	GGCC	4 cut(s)	102, 138, 190, 1016
Bsp1286I	GDGCHC	3 cut(s)	13, 121, 817
Bsp143I	GATC	2 cut(s)	394, 844
Bsp19I	CCATGG	1 cut(s)	103
BspACI	CCGC	1 cut(s)	461
BspANI	GGCC	4 cut(s)	102, 138, 190, 1016
BspCNI	CTCAG	3 cut(s)	177, 357, 468
BspFNI	CGCG	2 cut(s)	773, 1009
BspLI	GGNNCC	2 cut(s)	49, 740
BspMAI	CTGCAG	1 cut(s)	1000
BspMI	ACCTGC	2 cut(s)	521, 1012
BspPI	GGATC	1 cut(s)	389
BsrFI	RCCGGY	1 cut(s)	583
BsrI	ACTGG	1 cut(s)	1073
BssAI	RCCGGY	1 cut(s)	583
BssECI	CCNNGG	5 cut(s)	50, 103, 320, 413, 944
BssHII	GCGCGC	1 cut(s)	1007
BssMI	GATC	2 cut(s)	394, 844
BssT1I	CCWWGG	2 cut(s)	103, 413
Bst2UI	CCWGG	3 cut(s)	52, 321, 945
Bst4CI	ACNGT	1 cut(s)	839
Bst6I	CTCTTC	2 cut(s)	21, 213
BstAPI	GCANNNNNTGC	5 cut(s)	159, 533, 536, 867, 1004
BstC8I	GCNNGC	4 cut(s)	132, 136, 747, 1009
BstDEI	CTNAG	4 cut(s)	185, 365, 455, 722
BstDSI	CCRYGG	1 cut(s)	103
BstF5I	GGATG	1 cut(s)	1051
BstFNI	CGCG	2 cut(s)	773, 1009
BstHHI	GCGC	2 cut(s)	1009, 1011
BstKTI	GATC	2 cut(s)	397, 847
BstMBI	GATC	2 cut(s)	394, 844
BstMCI	CGRYCG	1 cut(s)	588
BstMWI	GCNNNNNNNGC	8 cut(s)	99, 108, 159, 533, 536, 867, 1004, 1013
BstNI	CCWGG	3 cut(s)	52, 321, 945
BstNSI	RCATGY	1 cut(s)	701
BstSCI	CCNGG	3 cut(s)	50, 319, 943
BstSFI	CTRYAG	1 cut(s)	996
BstSLI	GKGCMC	1 cut(s)	817
BstUI	CGCG	2 cut(s)	773, 1009
BstV1I	GCAGC	6 cut(s)	523, 536, 539, 857, 974, 1010
Bsu36I	CCTNAGG	1 cut(s)	185
BsuRI	GGCC	4 cut(s)	102, 138, 190, 1016
BtgI	CCRYGG	1 cut(s)	103
BtsCI	GGATG	1 cut(s)	1051
BtsIMutI	CAGTG	1 cut(s)	463
BveI	ACCTGC	2 cut(s)	521, 1012
Cac8I	GCNNGC	4 cut(s)	132, 136, 747, 1009
CaiI	CAGNNNCTG	2 cut(s)	536, 1004
CfoI	GCGC	2 cut(s)	1009, 1011
Cfr10I	RCCGGY	1 cut(s)	583
Cfr13I	GGNCC	2 cut(s)	47, 992
Csp6I	GTAC	2 cut(s)	274, 714
CspCI	CAANNNNNGTGG	2 cut(s)	130, 165
CviAII	CATG	9 cut(s)	104, 385, 484, 577, 698, 718, 856, 985, 1012
CviQI	GTAC	2 cut(s)	274, 714
DdeI	CTNAG	4 cut(s)	185, 365, 455, 722
DpnI	GATC	2 cut(s)	396, 846
DpnII	GATC	2 cut(s)	394, 844
EaeI	YGGCCR	2 cut(s)	100, 1014
Eam1104I	CTCTTC	2 cut(s)	21, 213
EarI	CTCTTC	2 cut(s)	21, 213
Ecl136II	GAGCTC	1 cut(s)	119
Eco130I	CCWWGG	2 cut(s)	103, 413
Eco147I	AGGCCT	1 cut(s)	190
Eco24I	GRGCYC	2 cut(s)	13, 121
Eco47I	GGWCC	2 cut(s)	47, 992
Eco53kI	GAGCTC	1 cut(s)	119
Eco57I	CTGAAG	2 cut(s)	533, 942
Eco81I	CCTNAGG	1 cut(s)	185
EcoICRI	GAGCTC	1 cut(s)	119
EcoO109I	RGGNCCY	1 cut(s)	47
EcoRII	CCWGG	3 cut(s)	50, 319, 943
EcoT14I	CCWWGG	2 cut(s)	103, 413
EcoT38I	GRGCYC	2 cut(s)	13, 121
ErhI	CCWWGG	2 cut(s)	103, 413
FaeI	CATG	9 cut(s)	107, 388, 487, 580, 701, 721, 859, 988, 1015
FaqI	GGGAC	3 cut(s)	33, 515, 961
FatI	CATG	9 cut(s)	103, 384, 483, 576, 697, 717, 855, 984, 1011
FbaI	TGATCA	1 cut(s)	844
FblI	GTMKAC	1 cut(s)	633
Fnu4HI	GCNGC	7 cut(s)	462, 525, 528, 537, 871, 963, 999
FokI	GGATG	1 cut(s)	1058
FriOI	GRGCYC	2 cut(s)	13, 121
Fsp4HI	GCNGC	7 cut(s)	462, 525, 528, 537, 871, 963, 999
FspBI	CTAG	3 cut(s)	492, 651, 1082
GlaI	GCGC	2 cut(s)	1008, 1010
GluI	GCNGC	7 cut(s)	462, 525, 528, 537, 871, 963, 999
GsuI	CTGGAG	1 cut(s)	133
HaeIII	GGCC	4 cut(s)	102, 138, 190, 1016
HapII	CCGG	1 cut(s)	584
HhaI	GCGC	2 cut(s)	1009, 1011
Hin1II	CATG	9 cut(s)	107, 388, 487, 580, 701, 721, 859, 988, 1015
Hin6I	GCGC	2 cut(s)	1007, 1009
HinP1I	GCGC	2 cut(s)	1007, 1009
HindIII	AAGCTT	1 cut(s)	128
HinfI	GANTC	1 cut(s)	1061
HpaII	CCGG	1 cut(s)	584
Hpy166II	GTNNAC	4 cut(s)	174, 274, 634, 815
Hpy188I	TCNGA	2 cut(s)	217, 684
Hpy188III	TCNNGA	6 cut(s)	343, 589, 731, 842, 848, 1082
Hpy8I	GTNNAC	4 cut(s)	174, 274, 634, 815
HpyAV	CCTTC	3 cut(s)	657, 785, 794
HpyCH4III	ACNGT	1 cut(s)	839
HpyF10VI	GCNNNNNNNGC	8 cut(s)	99, 108, 159, 533, 536, 867, 1004, 1013
HpyF3I	CTNAG	4 cut(s)	185, 365, 455, 722
Hsp92II	CATG	9 cut(s)	107, 388, 487, 580, 701, 721, 859, 988, 1015
HspAI	GCGC	2 cut(s)	1007, 1009
Ksp22I	TGATCA	1 cut(s)	844
Kzo9I	GATC	2 cut(s)	394, 844
LmnI	GCTCC	3 cut(s)	381, 438, 707
Lsp1109I	GCAGC	6 cut(s)	523, 536, 539, 857, 974, 1010
LweI	GCATC	3 cut(s)	58, 570, 1015
MaeI	CTAG	3 cut(s)	492, 651, 1082
MaeIII	GTNAC	1 cut(s)	558
MalI	GATC	2 cut(s)	396, 846
MboI	GATC	2 cut(s)	394, 844
MhlI	GDGCHC	3 cut(s)	13, 121, 817
MlsI	TGGCCA	2 cut(s)	102, 1016
MluCI	AATT	3 cut(s)	74, 178, 622
MluNI	TGGCCA	2 cut(s)	102, 1016
Mox20I	TGGCCA	2 cut(s)	102, 1016
MscI	TGGCCA	2 cut(s)	102, 1016
MseI	TTAA	4 cut(s)	167, 198, 678, 1102
MslI	CAYNNNNRTG	1 cut(s)	702
Msp20I	TGGCCA	2 cut(s)	102, 1016
MspI	CCGG	1 cut(s)	584
MspR9I	CCNGG	3 cut(s)	52, 321, 945
MvaI	CCWGG	3 cut(s)	52, 321, 945
MvnI	CGCG	2 cut(s)	773, 1009
MwoI	GCNNNNNNNGC	8 cut(s)	99, 108, 159, 533, 536, 867, 1004, 1013
NcoI	CCATGG	1 cut(s)	103
NdeII	GATC	2 cut(s)	394, 844
NlaIII	CATG	9 cut(s)	107, 388, 487, 580, 701, 721, 859, 988, 1015
NlaIV	GGNNCC	2 cut(s)	49, 740
NspI	RCATGY	1 cut(s)	701
PaqCI	CACCTGC	2 cut(s)	521, 1012
PauI	GCGCGC	1 cut(s)	1007
PceI	AGGCCT	1 cut(s)	190
PciI	ACATGT	1 cut(s)	697
PfeI	GAWTC	1 cut(s)	1061
PkrI	GCNGC	7 cut(s)	463, 526, 529, 538, 872, 964, 1000
PpuMI	RGGWCCY	1 cut(s)	47
PscI	ACATGT	1 cut(s)	697
PsiI	TTATAA	1 cut(s)	627
Psp124BI	GAGCTC	1 cut(s)	121
Psp5II	RGGWCCY	1 cut(s)	47
Psp6I	CCWGG	3 cut(s)	50, 319, 943
PspGI	CCWGG	3 cut(s)	50, 319, 943
PspN4I	GGNNCC	2 cut(s)	49, 740
PspPI	GGNCC	2 cut(s)	47, 992
PspPPI	RGGWCCY	1 cut(s)	47
PstI	CTGCAG	1 cut(s)	1000
PstNI	CAGNNNCTG	2 cut(s)	536, 1004
PteI	GCGCGC	1 cut(s)	1007
RsaI	GTAC	2 cut(s)	275, 715
RsaNI	GTAC	2 cut(s)	274, 714
RseI	CAYNNNNRTG	1 cut(s)	702
SacI	GAGCTC	1 cut(s)	121
SaqAI	TTAA	4 cut(s)	167, 198, 678, 1102
SatI	GCNGC	7 cut(s)	462, 525, 528, 537, 871, 963, 999
Sau3AI	GATC	2 cut(s)	394, 844
Sau96I	GGNCC	2 cut(s)	47, 992
ScrFI	CCNGG	3 cut(s)	52, 321, 945
SduI	GDGCHC	3 cut(s)	13, 121, 817
SfaNI	GCATC	3 cut(s)	58, 570, 1015
SfcI	CTRYAG	1 cut(s)	996
SinI	GGWCC	2 cut(s)	47, 992
SmiMI	CAYNNNNRTG	1 cut(s)	702
SpeI	ACTAGT	1 cut(s)	491
Sse9I	AATT	3 cut(s)	74, 178, 622
SseBI	AGGCCT	1 cut(s)	190
SsiI	CCGC	1 cut(s)	461
SspMI	CTAG	3 cut(s)	492, 651, 1082
SstI	GAGCTC	1 cut(s)	121
StuI	AGGCCT	1 cut(s)	190
StyD4I	CCNGG	3 cut(s)	50, 319, 943
StyI	CCWWGG	2 cut(s)	103, 413
TaaI	ACNGT	1 cut(s)	839
TaqI	TCGA	3 cut(s)	438, 479, 759
TasI	AATT	3 cut(s)	74, 178, 622
TatI	WGTACW	1 cut(s)	273
TauI	GCSGC	1 cut(s)	464
TfiI	GAWTC	1 cut(s)	1061
Tru1I	TTAA	4 cut(s)	167, 198, 678, 1102
Tru9I	TTAA	4 cut(s)	167, 198, 678, 1102
TscAI	CASTG	1 cut(s)	463
TseI	GCWGC	6 cut(s)	524, 527, 536, 870, 962, 998
TspDTI	ATGAA	5 cut(s)	39, 236, 656, 915, 1065
TspRI	CASTG	1 cut(s)	463
VneI	GTGCAC	1 cut(s)	813
VpaK11BI	GGWCC	2 cut(s)	47, 992
XbaI	TCTAGA	1 cut(s)	1081
XceI	RCATGY	1 cut(s)	701
XmiI	GTMKAC	1 cut(s)	633
XspI	CTAG	3 cut(s)	492, 651, 1082

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.