Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0008586

Physical Location & Seq

Genomic Coordinates Reverse (-)

4747254 .. 4748441

Gene Structure 1188 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1037300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGGTTAGAGCCCCTTGTTGTGATGAAGAGAGCAGTTTGAAGAAAGGTCCCTGGACAACCGAAGAAGATGCAAAATTGATGGATTATATTAGCAGAAATGGCCATGGAAGCTGGAGAGCTCTCCCCAAGCTTGCTGGCCTCAACAGGTGTGGCAAGAGTTGCAGATTAAGGTGGACAAATTACCTGAGGCCTGATATTAAGAGAGGAAAGTTCTCCGAAGAGGAAGAAAGAGTTATCATCAATCTTCATTCAGTTCTTGGAAACAAGTGGTCAAAGATTGCAACTCATCTTCCAGGGAGAACCGATAACGAAATCAAGAACTATTGGAACACCCAACTGAGAAAGAAGCTCCTGCACATGGGGATTGATCCAAACACCCACAGGCCAAGGACTGACCTCAATCAGCTCCTCGACCTTTCAAGGTTGCTCAGTGTGGCACTTGTTGGCAACTCGAACAAGATGACTAGTCCTTGGGACAATGCCCTGAAGCTGAAAGCAGCAGCAGGTGCTGCCGAACTTACCAAAATGCAGTTACTTCAACATTTATACATGATGCCGGTCGTGAGGACAAGTAATAGTAGTGTTCCTCCTAATAATTATAATGTAGACTTGATGAACCCTTCTAGTAGTCTTTTTGGTTCTCACATTCTTAATCCGTTTGGAGGAGGACATGTGAGTGGAGCAAGTACCATGCTAAGTGGTCAAGAATGGAACCAGCAGGCTGATATAGTCGATGGCTTCCACGCGATTTCTAACTCGTTAGAAGGATTTGAAGGTGGGTTTGGTGCACAAGGAGTTATTAGTAGGAACAGTCCTGATCAGGAGAACATGAGCAGTAGTTGCTGCTATGATGATATATATGTGCAGACCAAAAACCACCCACTTCCTGCATTAGTTTCATCATCATCAGTATATCCTGGGACTTCTCCTTCAGCAGCGAACCAAATGGAAATAAGCATGAGTGGTCCTGCTGCACCTGCGCGCACGGCCATCTTTGATGCTTGGGAGAAACTCATGGATGATGAAACAAGTGAATCCTACTGGAAAGATATTCTAGAGTATGTTCTTGCAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

359

Amino Acids

39.68

Weight (kDa)

6.37

Isoelectric Point (pI)

47.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	15 - 62	1.7e-15	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	18 - 77	7e-12	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	68 - 113	3.6e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	71 - 116	1.4e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008586)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02940 AT3G02940 AT3G02940 AT5G16770 AT5G16770 AT5G16770 AT5G16770
fragaria_vesca	FvH4_5g22510
malus_domestica	MD06G1037300.v1.1 MD16G1271400.v1.1
prunus_persica	Prupe.5G031700_v2.0.a1
pyrus_communis	pycom06g03080 pycom16g24100
rosa_chinensis	RchiOBHm_Chr7g0210281
rosa_laevigata	RLG00000003052
rosa_multiflora	Rmu_sc0003639.1_g000007 Rmu_sc0007188.1_g000001
rosa_roxburghii	Rroxscaffold_3G00248460
rosa_rugosa	Rorug07G0120400
rosa_samantha	Rh7AG253300 Rh7CG270200 Rh7DG260900
rosa_wichuraiana	Rw7G021590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	600
AarI	CACCTGC	2 cut(s)	494, 985
Acc36I	ACCTGC	2 cut(s)	494, 985
AccI	GTMKAC	1 cut(s)	606
AccII	CGCG	2 cut(s)	746, 982
AclWI	GGATC	1 cut(s)	362
AcoI	YGGCCR	2 cut(s)	100, 987
AcuI	CTGAAG	2 cut(s)	506, 915
AfaI	GTAC	1 cut(s)	688
AfiI	CCNNNNNNNGG	2 cut(s)	358, 662
AflIII	ACRYGT	1 cut(s)	670
AgsI	TTSAA	4 cut(s)	40, 420, 539, 773
AhlI	ACTAGT	1 cut(s)	464
AjnI	CCWGG	3 cut(s)	50, 292, 916
AjuI	GAANNNNNNNTTGG	2 cut(s)	765, 797
AluBI	AGCT	6 cut(s)	111, 119, 130, 349, 406, 490
AluI	AGCT	6 cut(s)	111, 119, 130, 349, 406, 490
Alw21I	GWGCWC	2 cut(s)	121, 790
Alw44I	GTGCAC	1 cut(s)	786
AlwI	GGATC	1 cut(s)	362
AlwNI	CAGNNNCTG	1 cut(s)	509
AoxI	GGCC	5 cut(s)	100, 136, 188, 383, 987
ApaLI	GTGCAC	1 cut(s)	786
ApeKI	GCWGC	6 cut(s)	497, 500, 509, 843, 935, 971
AspLEI	GCGC	2 cut(s)	982, 984
AspS9I	GGNCC	2 cut(s)	47, 965
AvaII	GGWCC	2 cut(s)	47, 965
AxyI	CCTNAGG	1 cut(s)	185
BaeGI	GKGCMC	1 cut(s)	790
BalI	TGGCCA	1 cut(s)	102
BanII	GRGCYC	2 cut(s)	13, 121
Bbv12I	GWGCWC	2 cut(s)	121, 790
BbvI	GCAGC	6 cut(s)	496, 509, 512, 830, 947, 958
BccI	CCATC	3 cut(s)	73, 728, 998
BceAI	ACGGC	1 cut(s)	1002
BcgI	CGANNNNNNTGC	2 cut(s)	50, 84
BciT130I	CCWGG	3 cut(s)	52, 294, 918
BclI	TGATCA	1 cut(s)	817
BcuI	ACTAGT	1 cut(s)	464
BfaI	CTAG	3 cut(s)	465, 624, 1055
BfuAI	ACCTGC	2 cut(s)	494, 985
BisI	GCNGC	6 cut(s)	498, 501, 510, 844, 936, 972
BlsI	GCNGC	6 cut(s)	499, 502, 511, 845, 937, 973
Bme1390I	CCNGG	3 cut(s)	52, 294, 918
Bme18I	GGWCC	2 cut(s)	47, 965
BmgT120I	GGNCC	2 cut(s)	47, 965
BmiI	GGNNCC	2 cut(s)	49, 713
BmrFI	CCNGG	3 cut(s)	52, 294, 918
BmsI	GCATC	3 cut(s)	58, 543, 988
BpmI	CTGGAG	1 cut(s)	133
BsaJI	CCNNGG	6 cut(s)	50, 103, 293, 386, 470, 917
BsaXI	ACNNNNNCTCC	2 cut(s)	657, 687
Bsc4I	CCNNNNNNNGG	2 cut(s)	358, 662
Bse118I	RCCGGY	1 cut(s)	556
Bse1I	ACTGG	1 cut(s)	1046
Bse21I	CCTNAGG	1 cut(s)	185
BseBI	CCWGG	3 cut(s)	52, 294, 918
BseDI	CCNNGG	6 cut(s)	50, 103, 293, 386, 470, 917
BseGI	GGATG	1 cut(s)	1024
BseLI	CCNNNNNNNGG	2 cut(s)	358, 662
BseMII	CTCAG	3 cut(s)	176, 329, 442
BseNI	ACTGG	1 cut(s)	1046
BsePI	GCGCGC	1 cut(s)	980
BseRI	GAGGAG	2 cut(s)	398, 678
BseSI	GKGCMC	1 cut(s)	790
BseXI	GCAGC	6 cut(s)	496, 509, 512, 830, 947, 958
BsgI	GTGCAG	3 cut(s)	338, 884, 957
Bsh1236I	CGCG	2 cut(s)	746, 982
Bsh1285I	CGRYCG	1 cut(s)	561
BshFI	GGCC	5 cut(s)	102, 138, 190, 385, 989
BsiEI	CGRYCG	1 cut(s)	561
BsiHKAI	GWGCWC	2 cut(s)	121, 790
BsiSI	CCGG	1 cut(s)	557
BslFI	GGGAC	3 cut(s)	33, 488, 934
BslI	CCNNNNNNNGG	2 cut(s)	358, 662
BsmFI	GGGAC	3 cut(s)	33, 488, 934
BsnI	GGCC	5 cut(s)	102, 138, 190, 385, 989
Bsp1286I	GDGCHC	3 cut(s)	13, 121, 790
Bsp143I	GATC	2 cut(s)	367, 817
Bsp19I	CCATGG	1 cut(s)	103
BspANI	GGCC	5 cut(s)	102, 138, 190, 385, 989
BspCNI	CTCAG	3 cut(s)	177, 330, 441
BspFNI	CGCG	2 cut(s)	746, 982
BspLI	GGNNCC	2 cut(s)	49, 713
BspMI	ACCTGC	2 cut(s)	494, 985
BspPI	GGATC	1 cut(s)	362
BsrFI	RCCGGY	1 cut(s)	556
BsrI	ACTGG	1 cut(s)	1046
BssAI	RCCGGY	1 cut(s)	556
BssECI	CCNNGG	6 cut(s)	50, 103, 293, 386, 470, 917
BssHII	GCGCGC	1 cut(s)	980
BssMI	GATC	2 cut(s)	367, 817
BssT1I	CCWWGG	3 cut(s)	103, 386, 470
Bst2UI	CCWGG	3 cut(s)	52, 294, 918
Bst4CI	ACNGT	1 cut(s)	812
Bst6I	CTCTTC	2 cut(s)	21, 213
BstAPI	GCANNNNNTGC	4 cut(s)	159, 506, 509, 840
BstC8I	GCNNGC	4 cut(s)	132, 136, 720, 982
BstDEI	CTNAG	4 cut(s)	185, 338, 428, 695
BstDSI	CCRYGG	1 cut(s)	103
BstF5I	GGATG	1 cut(s)	1024
BstFNI	CGCG	2 cut(s)	746, 982
BstHHI	GCGC	2 cut(s)	982, 984
BstKTI	GATC	2 cut(s)	370, 820
BstMBI	GATC	2 cut(s)	367, 817
BstMCI	CGRYCG	1 cut(s)	561
BstMWI	GCNNNNNNNGC	8 cut(s)	99, 108, 159, 506, 509, 840, 977, 986
BstNI	CCWGG	3 cut(s)	52, 294, 918
BstNSI	RCATGY	1 cut(s)	674
BstSCI	CCNGG	3 cut(s)	50, 292, 916
BstSLI	GKGCMC	1 cut(s)	790
BstUI	CGCG	2 cut(s)	746, 982
BstV1I	GCAGC	6 cut(s)	496, 509, 512, 830, 947, 958
Bsu36I	CCTNAGG	1 cut(s)	185
BsuRI	GGCC	5 cut(s)	102, 138, 190, 385, 989
BtgI	CCRYGG	1 cut(s)	103
BtsCI	GGATG	1 cut(s)	1024
BtsIMutI	CAGTG	1 cut(s)	436
BveI	ACCTGC	2 cut(s)	494, 985
Cac8I	GCNNGC	4 cut(s)	132, 136, 720, 982
CaiI	CAGNNNCTG	1 cut(s)	509
CfoI	GCGC	2 cut(s)	982, 984
Cfr10I	RCCGGY	1 cut(s)	556
Cfr13I	GGNCC	2 cut(s)	47, 965
Csp6I	GTAC	1 cut(s)	687
CspCI	CAANNNNNGTGG	2 cut(s)	130, 165
CviAII	CATG	8 cut(s)	104, 358, 550, 671, 691, 829, 958, 1015
CviQI	GTAC	1 cut(s)	687
DdeI	CTNAG	4 cut(s)	185, 338, 428, 695
DpnI	GATC	2 cut(s)	369, 819
DpnII	GATC	2 cut(s)	367, 817
EaeI	YGGCCR	2 cut(s)	100, 987
Eam1104I	CTCTTC	2 cut(s)	21, 213
EarI	CTCTTC	2 cut(s)	21, 213
Ecl136II	GAGCTC	1 cut(s)	119
Eco130I	CCWWGG	3 cut(s)	103, 386, 470
Eco147I	AGGCCT	1 cut(s)	190
Eco24I	GRGCYC	2 cut(s)	13, 121
Eco47I	GGWCC	2 cut(s)	47, 965
Eco53kI	GAGCTC	1 cut(s)	119
Eco57I	CTGAAG	2 cut(s)	506, 915
Eco81I	CCTNAGG	1 cut(s)	185
EcoICRI	GAGCTC	1 cut(s)	119
EcoO109I	RGGNCCY	1 cut(s)	47
EcoRII	CCWGG	3 cut(s)	50, 292, 916
EcoT14I	CCWWGG	3 cut(s)	103, 386, 470
EcoT38I	GRGCYC	2 cut(s)	13, 121
ErhI	CCWWGG	3 cut(s)	103, 386, 470
FaeI	CATG	8 cut(s)	107, 361, 553, 674, 694, 832, 961, 1018
FaqI	GGGAC	3 cut(s)	33, 488, 934
FatI	CATG	8 cut(s)	103, 357, 549, 670, 690, 828, 957, 1014
FbaI	TGATCA	1 cut(s)	817
FblI	GTMKAC	1 cut(s)	606
Fnu4HI	GCNGC	6 cut(s)	498, 501, 510, 844, 936, 972
FokI	GGATG	1 cut(s)	1031
FriOI	GRGCYC	2 cut(s)	13, 121
Fsp4HI	GCNGC	6 cut(s)	498, 501, 510, 844, 936, 972
FspBI	CTAG	3 cut(s)	465, 624, 1055
GlaI	GCGC	2 cut(s)	981, 983
GluI	GCNGC	6 cut(s)	498, 501, 510, 844, 936, 972
GsuI	CTGGAG	1 cut(s)	133
HaeIII	GGCC	5 cut(s)	102, 138, 190, 385, 989
HapII	CCGG	1 cut(s)	557
HhaI	GCGC	2 cut(s)	982, 984
Hin1II	CATG	8 cut(s)	107, 361, 553, 674, 694, 832, 961, 1018
Hin6I	GCGC	2 cut(s)	980, 982
HinP1I	GCGC	2 cut(s)	980, 982
HindIII	AAGCTT	1 cut(s)	128
HinfI	GANTC	1 cut(s)	1034
HpaII	CCGG	1 cut(s)	557
Hpy166II	GTNNAC	3 cut(s)	174, 607, 788
Hpy188I	TCNGA	1 cut(s)	217
Hpy188III	TCNNGA	6 cut(s)	316, 562, 704, 815, 821, 1055
Hpy8I	GTNNAC	3 cut(s)	174, 607, 788
HpyAV	CCTTC	4 cut(s)	630, 758, 767, 939
HpyCH4III	ACNGT	1 cut(s)	812
HpyF10VI	GCNNNNNNNGC	8 cut(s)	99, 108, 159, 506, 509, 840, 977, 986
HpyF3I	CTNAG	4 cut(s)	185, 338, 428, 695
Hsp92II	CATG	8 cut(s)	107, 361, 553, 674, 694, 832, 961, 1018
HspAI	GCGC	2 cut(s)	980, 982
Ksp22I	TGATCA	1 cut(s)	817
Kzo9I	GATC	2 cut(s)	367, 817
LmnI	GCTCC	3 cut(s)	354, 411, 680
Lsp1109I	GCAGC	6 cut(s)	496, 509, 512, 830, 947, 958
LweI	GCATC	3 cut(s)	58, 543, 988
MaeI	CTAG	3 cut(s)	465, 624, 1055
MaeIII	GTNAC	1 cut(s)	531
MalI	GATC	2 cut(s)	369, 819
MboI	GATC	2 cut(s)	367, 817
MboII	GAAGA	8 cut(s)	38, 52, 74, 77, 230, 236, 236, 281
MhlI	GDGCHC	3 cut(s)	13, 121, 790
MlsI	TGGCCA	1 cut(s)	102
MluCI	AATT	3 cut(s)	74, 178, 595
MluNI	TGGCCA	1 cut(s)	102
Mox20I	TGGCCA	1 cut(s)	102
MscI	TGGCCA	1 cut(s)	102
MseI	TTAA	4 cut(s)	167, 198, 651, 1075
MslI	CAYNNNNRTG	1 cut(s)	675
Msp20I	TGGCCA	1 cut(s)	102
MspI	CCGG	1 cut(s)	557
MspR9I	CCNGG	3 cut(s)	52, 294, 918
MvaI	CCWGG	3 cut(s)	52, 294, 918
MvnI	CGCG	2 cut(s)	746, 982
MwoI	GCNNNNNNNGC	8 cut(s)	99, 108, 159, 506, 509, 840, 977, 986
NcoI	CCATGG	1 cut(s)	103
NdeII	GATC	2 cut(s)	367, 817
NlaIII	CATG	8 cut(s)	107, 361, 553, 674, 694, 832, 961, 1018
NlaIV	GGNNCC	2 cut(s)	49, 713
NspI	RCATGY	1 cut(s)	674
PaqCI	CACCTGC	2 cut(s)	494, 985
PauI	GCGCGC	1 cut(s)	980
PceI	AGGCCT	1 cut(s)	190
PciI	ACATGT	1 cut(s)	670
PfeI	GAWTC	1 cut(s)	1034
PkrI	GCNGC	6 cut(s)	499, 502, 511, 845, 937, 973
PpuMI	RGGWCCY	1 cut(s)	47
PscI	ACATGT	1 cut(s)	670
PsiI	TTATAA	1 cut(s)	600
Psp124BI	GAGCTC	1 cut(s)	121
Psp5II	RGGWCCY	1 cut(s)	47
Psp6I	CCWGG	3 cut(s)	50, 292, 916
PspGI	CCWGG	3 cut(s)	50, 292, 916
PspN4I	GGNNCC	2 cut(s)	49, 713
PspPI	GGNCC	2 cut(s)	47, 965
PspPPI	RGGWCCY	1 cut(s)	47
PstNI	CAGNNNCTG	1 cut(s)	509
PteI	GCGCGC	1 cut(s)	980
RsaI	GTAC	1 cut(s)	688
RsaNI	GTAC	1 cut(s)	687
RseI	CAYNNNNRTG	1 cut(s)	675
SacI	GAGCTC	1 cut(s)	121
SaqAI	TTAA	4 cut(s)	167, 198, 651, 1075
SatI	GCNGC	6 cut(s)	498, 501, 510, 844, 936, 972
Sau3AI	GATC	2 cut(s)	367, 817
Sau96I	GGNCC	2 cut(s)	47, 965
ScrFI	CCNGG	3 cut(s)	52, 294, 918
SduI	GDGCHC	3 cut(s)	13, 121, 790
SfaNI	GCATC	3 cut(s)	58, 543, 988
SinI	GGWCC	2 cut(s)	47, 965
SmiMI	CAYNNNNRTG	1 cut(s)	675
SpeI	ACTAGT	1 cut(s)	464
Sse9I	AATT	3 cut(s)	74, 178, 595
SseBI	AGGCCT	1 cut(s)	190
SspMI	CTAG	3 cut(s)	465, 624, 1055
SstI	GAGCTC	1 cut(s)	121
StuI	AGGCCT	1 cut(s)	190
StyD4I	CCNGG	3 cut(s)	50, 292, 916
StyI	CCWWGG	3 cut(s)	103, 386, 470
TaaI	ACNGT	1 cut(s)	812
TaqI	TCGA	3 cut(s)	411, 452, 732
TasI	AATT	3 cut(s)	74, 178, 595
TfiI	GAWTC	1 cut(s)	1034
Tru1I	TTAA	4 cut(s)	167, 198, 651, 1075
Tru9I	TTAA	4 cut(s)	167, 198, 651, 1075
TscAI	CASTG	1 cut(s)	436
TseI	GCWGC	6 cut(s)	497, 500, 509, 843, 935, 971
TspDTI	ATGAA	5 cut(s)	39, 236, 629, 888, 1038
TspGWI	ACGGA	1 cut(s)	645
TspRI	CASTG	1 cut(s)	436
VneI	GTGCAC	1 cut(s)	786
VpaK11BI	GGWCC	2 cut(s)	47, 965
XbaI	TCTAGA	1 cut(s)	1054
XceI	RCATGY	1 cut(s)	674
XmiI	GTMKAC	1 cut(s)	606
XspI	CTAG	3 cut(s)	465, 624, 1055

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.