Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0008586

Physical Location & Seq

Genomic Coordinates Reverse (-)

13841223 .. 13843034

Gene Structure 1812 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g22510.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGTCCAAACTAATCCTAGAATCCTTCTCAACTTTTCATCTGAGATCTAGACATCGTTTGTTTCTTACGATAATGGGTAGATCTCCTTGTTGTGATGATCAGAGCGGTTTAAAGAAAGGTCCATGGACAACTGAAGAAGATCAAAAGTTGGTTGATTACATTAACAGAAATGGCCATGGAAGCTGGAGAGCTCTCCCCAAGCTTGCAGGCCTCAACAGGTGTGGCAAAAGTTGCAGGTTAAGGTGGACTAATTACCTGAGGCCTGATATCAAGAGAGGGAAATTCTCCGAAGAAGAGGAAAGAGTTATCATCAACCTTCATGCAGTGGTTGGAAACAAGTGGTCTAAGATTGCAACTCATCTTCCAGGGCGAACTGATAATGAAATCAAGAACTATTGGAACACTCACCTGAGAAAGAAGCTGCTACAAATGGGACTTGATCCAAACACCCACAAGCCGAGGACAGACCTCAATCACCTTCTGAACCTTTCACAGTTGCTTAGCATGGCGAGTGTCGGCAACATGGTGACTAGTAATCCATGGGACAATGCAGTAAGGCTACAAGCTAGTGCTGCACAGCTATCTAAAATGCAGTTACTGCAAAATTTATACATGCAGGTTATAAATTCATCAATTGCAACTCCTGATATAGACAACAAGACTGGTATTGGTCCTTTTGGTTCTCAGAATATTAACCTCTTTGGAGGGAACTTCAATGGAGCAAGCAGCATGGTCGACAGAGATCAAGAATGGGACGGAGCTAGCATCCCCGGGGCACCTAATGACTTGAACACTATTTCCAACACATTGGAAGGGTTTGAAGGATTTAATAGCAATATTAACAACAACTGCTATGGTATGCAGAACTTCAAGAACCAGTATCCTGAATTGGTTTCATCATCATCTCCTGGGAGTTCCACTACCAACAACCGAATTGAAAGCACTAGTACAAGTGATATTCCAGATGCATGTCAGTCATCGCCCACTTCCATCTTTGAGGCTTGGGAGAGACTCATGGATGATGATACAAGTGAATCCTACTGGAAAAATATTCTGCAATCAATGTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

357

Amino Acids

39.98

Weight (kDa)

7.65

Isoelectric Point (pI)

46.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	39 - 86	1.5e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	42 - 101	2.5e-12	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	92 - 137	2.9e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	95 - 140	1.7e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008586)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02940 AT3G02940 AT3G02940 AT5G16770 AT5G16770 AT5G16770 AT5G16770
fragaria_vesca	FvH4_5g22510
malus_domestica	MD06G1037300.v1.1 MD16G1271400.v1.1
prunus_persica	Prupe.5G031700_v2.0.a1
pyrus_communis	pycom06g03080 pycom16g24100
rosa_chinensis	RchiOBHm_Chr7g0210281
rosa_laevigata	RLG00000003052
rosa_multiflora	Rmu_sc0003639.1_g000007 Rmu_sc0007188.1_g000001
rosa_roxburghii	Rroxscaffold_3G00248460
rosa_rugosa	Rorug07G0120400
rosa_samantha	Rh7AG253300 Rh7CG270200 Rh7DG260900
rosa_wichuraiana	Rw7G021590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	623
Acc36I	ACCTGC	2 cut(s)	225, 607
AccB1I	GGYRCC	1 cut(s)	775
AccBSI	CCGCTC	1 cut(s)	105
AccI	GTMKAC	1 cut(s)	735
AciI	CCGC	1 cut(s)	105
AclWI	GGATC	1 cut(s)	434
AcoI	YGGCCR	1 cut(s)	172
AcsI	RAATTY	3 cut(s)	281, 604, 625
AcuI	CTGAAG	1 cut(s)	153
AfaI	GTAC	1 cut(s)	949
AgsI	TTSAA	5 cut(s)	715, 790, 821, 871, 938
AhlI	ACTAGT	2 cut(s)	530, 944
AjnI	CCWGG	2 cut(s)	364, 907
AloI	GAACNNNNNNTCC	2 cut(s)	782, 814
AluBI	AGCT	7 cut(s)	183, 191, 202, 421, 566, 580, 761
AluI	AGCT	7 cut(s)	183, 191, 202, 421, 566, 580, 761
Alw21I	GWGCWC	1 cut(s)	193
Alw26I	GTCTC	1 cut(s)	1003
AlwI	GGATC	1 cut(s)	434
AlwNI	CAGNNNCTG	1 cut(s)	598
Ama87I	CYCGRG	1 cut(s)	770
AoxI	GGCC	3 cut(s)	172, 208, 260
ApeKI	GCWGC	3 cut(s)	421, 572, 726
ApoI	RAATTY	3 cut(s)	281, 604, 625
AspS9I	GGNCC	2 cut(s)	119, 671
AsuC2I	CCSGG	2 cut(s)	771, 772
AsuHPI	GGTGA	3 cut(s)	398, 467, 538
AsuNHI	GCTAGC	1 cut(s)	761
AvaI	CYCGRG	1 cut(s)	770
AvaII	GGWCC	2 cut(s)	119, 671
AxyI	CCTNAGG	1 cut(s)	257
BaeGI	GKGCMC	1 cut(s)	778
BalI	TGGCCA	1 cut(s)	174
BanI	GGYRCC	1 cut(s)	775
BanII	GRGCYC	1 cut(s)	193
Bbv12I	GWGCWC	1 cut(s)	193
BbvI	GCAGC	3 cut(s)	408, 559, 738
BccI	CCATC	1 cut(s)	998
BcgI	CGANNNNNNTGC	2 cut(s)	715, 749
BciT130I	CCWGG	2 cut(s)	366, 909
BciVI	GTATCC	1 cut(s)	891
BclI	TGATCA	1 cut(s)	97
BcnI	CCSGG	2 cut(s)	771, 772
BcoDI	GTCTC	1 cut(s)	1003
BcuI	ACTAGT	2 cut(s)	530, 944
BfaI	CTAG	6 cut(s)	17, 48, 531, 567, 762, 945
BfuAI	ACCTGC	2 cut(s)	225, 607
BfuI	GTATCC	1 cut(s)	891
BglII	AGATCT	2 cut(s)	44, 80
BisI	GCNGC	3 cut(s)	422, 573, 727
BlpI	GCTNAGC	1 cut(s)	500
BlsI	GCNGC	3 cut(s)	423, 574, 728
Bme1390I	CCNGG	4 cut(s)	366, 771, 772, 909
Bme18I	GGWCC	2 cut(s)	119, 671
BmeT110I	CYCGRG	1 cut(s)	770
BmgT120I	GGNCC	2 cut(s)	119, 671
BmiI	GGNNCC	1 cut(s)	777
BmrFI	CCNGG	4 cut(s)	366, 771, 772, 909
BmsI	GCATC	2 cut(s)	774, 955
BmtI	GCTAGC	1 cut(s)	765
BpmI	CTGGAG	1 cut(s)	205
Bpu1102I	GCTNAGC	1 cut(s)	500
BpuMI	CCSGG	2 cut(s)	771, 772
BsaJI	CCNNGG	9 cut(s)	122, 175, 365, 458, 539, 769, 770, 771, 908
Bse1I	ACTGG	3 cut(s)	667, 877, 1046
Bse21I	CCTNAGG	1 cut(s)	257
BseBI	CCWGG	2 cut(s)	366, 909
BseDI	CCNNGG	9 cut(s)	122, 175, 365, 458, 539, 769, 770, 771, 908
BseGI	GGATG	2 cut(s)	765, 1024
BseMII	CTCAG	4 cut(s)	32, 248, 401, 698
BseNI	ACTGG	3 cut(s)	667, 877, 1046
BseSI	GKGCMC	1 cut(s)	778
BseXI	GCAGC	3 cut(s)	408, 559, 738
BsgI	GTGCAG	1 cut(s)	558
BshFI	GGCC	3 cut(s)	174, 210, 262
BshNI	GGYRCC	1 cut(s)	775
BsiHKAI	GWGCWC	1 cut(s)	193
BsiHKCI	CYCGRG	1 cut(s)	770
BsiSI	CCGG	1 cut(s)	771
BslFI	GGGAC	3 cut(s)	447, 557, 767
BsmAI	GTCTC	1 cut(s)	1003
BsmFI	GGGAC	3 cut(s)	447, 557, 767
BsnI	GGCC	3 cut(s)	174, 210, 262
BsoBI	CYCGRG	1 cut(s)	770
Bsp1286I	GDGCHC	2 cut(s)	193, 778
Bsp143I	GATC	6 cut(s)	44, 80, 97, 139, 439, 742
Bsp1720I	GCTNAGC	1 cut(s)	500
Bsp19I	CCATGG	3 cut(s)	122, 175, 539
BspACI	CCGC	1 cut(s)	105
BspANI	GGCC	3 cut(s)	174, 210, 262
BspCNI	CTCAG	4 cut(s)	33, 249, 402, 697
BspLI	GGNNCC	1 cut(s)	777
BspMI	ACCTGC	2 cut(s)	225, 607
BspOI	GCTAGC	1 cut(s)	765
BspPI	GGATC	1 cut(s)	434
BspT107I	GGYRCC	1 cut(s)	775
BsrBI	CCGCTC	1 cut(s)	105
BsrI	ACTGG	3 cut(s)	667, 877, 1046
BssECI	CCNNGG	9 cut(s)	122, 175, 365, 458, 539, 769, 770, 771, 908
BssMI	GATC	6 cut(s)	44, 80, 97, 139, 439, 742
BssT1I	CCWWGG	3 cut(s)	122, 175, 539
Bst2UI	CCWGG	2 cut(s)	366, 909
Bst4CI	ACNGT	1 cut(s)	495
Bst6I	CTCTTC	1 cut(s)	288
BstAPI	GCANNNNNTGC	2 cut(s)	231, 598
BstC8I	GCNNGC	4 cut(s)	204, 208, 724, 763
BstDEI	CTNAG	6 cut(s)	41, 257, 345, 410, 500, 684
BstDSI	CCRYGG	3 cut(s)	122, 175, 539
BstF5I	GGATG	2 cut(s)	765, 1024
BstKTI	GATC	6 cut(s)	47, 83, 100, 142, 442, 745
BstMAI	GTCTC	1 cut(s)	1003
BstMBI	GATC	6 cut(s)	44, 80, 97, 139, 439, 742
BstMWI	GCNNNNNNNGC	4 cut(s)	180, 231, 572, 598
BstNI	CCWGG	2 cut(s)	366, 909
BstNSI	RCATGY	2 cut(s)	616, 972
BstSCI	CCNGG	4 cut(s)	364, 769, 770, 907
BstSLI	GKGCMC	1 cut(s)	778
BstV1I	GCAGC	3 cut(s)	408, 559, 738
BstX2I	RGATCY	2 cut(s)	44, 80
BstXI	CCANNNNNNTGG	1 cut(s)	808
BstYI	RGATCY	2 cut(s)	44, 80
Bsu36I	CCTNAGG	1 cut(s)	257
BsuI	GTATCC	1 cut(s)	891
BsuRI	GGCC	3 cut(s)	174, 210, 262
BtgI	CCRYGG	3 cut(s)	122, 175, 539
BtgZI	GCGATG	1 cut(s)	963
BtsCI	GGATG	2 cut(s)	765, 1024
BtsI	GCAGTG	1 cut(s)	330
BtsIMutI	CAGTG	1 cut(s)	330
BveI	ACCTGC	2 cut(s)	225, 607
Cac8I	GCNNGC	4 cut(s)	204, 208, 724, 763
CaiI	CAGNNNCTG	1 cut(s)	598
Cfr13I	GGNCC	2 cut(s)	119, 671
Cfr9I	CCCGGG	1 cut(s)	770
Csp6I	GTAC	1 cut(s)	948
CspCI	CAANNNNNGTGG	2 cut(s)	202, 237
CviQI	GTAC	1 cut(s)	948
DdeI	CTNAG	6 cut(s)	41, 257, 345, 410, 500, 684
DpnI	GATC	6 cut(s)	46, 82, 99, 141, 441, 744
DpnII	GATC	6 cut(s)	44, 80, 97, 139, 439, 742
DraI	TTTAAA	1 cut(s)	111
EaeI	YGGCCR	1 cut(s)	172
Eam1104I	CTCTTC	1 cut(s)	288
EarI	CTCTTC	1 cut(s)	288
Ecl136II	GAGCTC	1 cut(s)	191
Eco130I	CCWWGG	3 cut(s)	122, 175, 539
Eco147I	AGGCCT	2 cut(s)	210, 262
Eco24I	GRGCYC	1 cut(s)	193
Eco32I	GATATC	1 cut(s)	268
Eco47I	GGWCC	2 cut(s)	119, 671
Eco53kI	GAGCTC	1 cut(s)	191
Eco57I	CTGAAG	1 cut(s)	153
Eco81I	CCTNAGG	1 cut(s)	257
Eco88I	CYCGRG	1 cut(s)	770
EcoICRI	GAGCTC	1 cut(s)	191
EcoRII	CCWGG	2 cut(s)	364, 907
EcoRV	GATATC	1 cut(s)	268
EcoT14I	CCWWGG	3 cut(s)	122, 175, 539
EcoT22I	ATGCAT	1 cut(s)	970
EcoT38I	GRGCYC	1 cut(s)	193
ErhI	CCWWGG	3 cut(s)	122, 175, 539
FaqI	GGGAC	3 cut(s)	447, 557, 767
FbaI	TGATCA	1 cut(s)	97
FblI	GTMKAC	1 cut(s)	735
Fnu4HI	GCNGC	3 cut(s)	422, 573, 727
FokI	GGATG	2 cut(s)	752, 1031
FriOI	GRGCYC	1 cut(s)	193
Fsp4HI	GCNGC	3 cut(s)	422, 573, 727
FspBI	CTAG	6 cut(s)	17, 48, 531, 567, 762, 945
GluI	GCNGC	3 cut(s)	422, 573, 727
GsuI	CTGGAG	1 cut(s)	205
HaeIII	GGCC	3 cut(s)	174, 210, 262
HapII	CCGG	1 cut(s)	771
HincII	GTYRAC	1 cut(s)	736
HindII	GTYRAC	1 cut(s)	736
HindIII	AAGCTT	1 cut(s)	200
HinfI	GANTC	3 cut(s)	20, 1011, 1034
HpaII	CCGG	1 cut(s)	771
HphI	GGTGA	3 cut(s)	398, 467, 538
Hpy166II	GTNNAC	2 cut(s)	246, 736
Hpy188I	TCNGA	5 cut(s)	42, 102, 289, 483, 687
Hpy188III	TCNNGA	8 cut(s)	48, 271, 388, 644, 746, 871, 884, 962
Hpy8I	GTNNAC	2 cut(s)	246, 736
HpyAV	CCTTC	5 cut(s)	34, 326, 488, 806, 815
HpyCH4III	ACNGT	1 cut(s)	495
HpyF10VI	GCNNNNNNNGC	4 cut(s)	180, 231, 572, 598
HpyF3I	CTNAG	6 cut(s)	41, 257, 345, 410, 500, 684
Ksp22I	TGATCA	1 cut(s)	97
Kzo9I	GATC	6 cut(s)	44, 80, 97, 139, 439, 742
LmnI	GCTCC	2 cut(s)	719, 758
Lsp1109I	GCAGC	3 cut(s)	408, 559, 738
LweI	GCATC	2 cut(s)	774, 955
MaeI	CTAG	6 cut(s)	17, 48, 531, 567, 762, 945
MaeIII	GTNAC	2 cut(s)	526, 594
MalI	GATC	6 cut(s)	46, 82, 99, 141, 441, 744
MbiI	CCGCTC	1 cut(s)	105
MboI	GATC	6 cut(s)	44, 80, 97, 139, 439, 742
MboII	GAAGA	5 cut(s)	146, 149, 302, 305, 353
MfeI	CAATTG	1 cut(s)	633
MflI	RGATCY	2 cut(s)	44, 80
MhlI	GDGCHC	2 cut(s)	193, 778
MlsI	TGGCCA	1 cut(s)	174
MluCI	AATT	7 cut(s)	250, 281, 604, 625, 633, 887, 933
MluNI	TGGCCA	1 cut(s)	174
MlyI	GAGTC	1 cut(s)	1005
MmeI	TCCRAC	2 cut(s)	310, 825
MnlI	CCTC	9 cut(s)	221, 252, 269, 289, 453, 479, 698, 707, 991
Mox20I	TGGCCA	1 cut(s)	174
Mph1103I	ATGCAT	1 cut(s)	970
MscI	TGGCCA	1 cut(s)	174
MseI	TTAA	6 cut(s)	110, 162, 239, 693, 828, 840
Msp20I	TGGCCA	1 cut(s)	174
MspI	CCGG	1 cut(s)	771
MspR9I	CCNGG	4 cut(s)	366, 771, 772, 909
MunI	CAATTG	1 cut(s)	633
MvaI	CCWGG	2 cut(s)	366, 909
MwoI	GCNNNNNNNGC	4 cut(s)	180, 231, 572, 598
NciI	CCSGG	2 cut(s)	771, 772
NcoI	CCATGG	3 cut(s)	122, 175, 539
NdeII	GATC	6 cut(s)	44, 80, 97, 139, 439, 742
NheI	GCTAGC	1 cut(s)	761
NlaIV	GGNNCC	1 cut(s)	777
NmeAIII	GCCGAG	1 cut(s)	483
NmuCI	GTSAC	1 cut(s)	526
NsiI	ATGCAT	1 cut(s)	970
NspI	RCATGY	2 cut(s)	616, 972
PceI	AGGCCT	2 cut(s)	210, 262
PfeI	GAWTC	2 cut(s)	20, 1034
PkrI	GCNGC	3 cut(s)	423, 574, 728
PleI	GAGTC	1 cut(s)	1005
PpsI	GAGTC	1 cut(s)	1005
PsiI	TTATAA	1 cut(s)	623
Psp124BI	GAGCTC	1 cut(s)	193
Psp6I	CCWGG	2 cut(s)	364, 907
PspGI	CCWGG	2 cut(s)	364, 907
PspN4I	GGNNCC	1 cut(s)	777
PspPI	GGNCC	2 cut(s)	119, 671
PstNI	CAGNNNCTG	1 cut(s)	598
PsuI	RGATCY	2 cut(s)	44, 80
RsaI	GTAC	1 cut(s)	949
RsaNI	GTAC	1 cut(s)	948
SacI	GAGCTC	1 cut(s)	193
SalI	GTCGAC	1 cut(s)	734
SaqAI	TTAA	6 cut(s)	110, 162, 239, 693, 828, 840
SatI	GCNGC	3 cut(s)	422, 573, 727
Sau3AI	GATC	6 cut(s)	44, 80, 97, 139, 439, 742
Sau96I	GGNCC	2 cut(s)	119, 671
SchI	GAGTC	1 cut(s)	1005
ScrFI	CCNGG	4 cut(s)	366, 771, 772, 909
SduI	GDGCHC	2 cut(s)	193, 778
SfaNI	GCATC	2 cut(s)	774, 955
SinI	GGWCC	2 cut(s)	119, 671
SmaI	CCCGGG	1 cut(s)	772
SpeI	ACTAGT	2 cut(s)	530, 944
Sse9I	AATT	7 cut(s)	250, 281, 604, 625, 633, 887, 933
SseBI	AGGCCT	2 cut(s)	210, 262
SsiI	CCGC	1 cut(s)	105
SspI	AATATT	3 cut(s)	691, 838, 1051
SspMI	CTAG	6 cut(s)	17, 48, 531, 567, 762, 945
SstI	GAGCTC	1 cut(s)	193
StuI	AGGCCT	2 cut(s)	210, 262
StyD4I	CCNGG	4 cut(s)	364, 769, 770, 907
StyI	CCWWGG	3 cut(s)	122, 175, 539
TaaI	ACNGT	1 cut(s)	495
TaqI	TCGA	1 cut(s)	735
TasI	AATT	7 cut(s)	250, 281, 604, 625, 633, 887, 933
TatI	WGTACW	1 cut(s)	947
TfiI	GAWTC	2 cut(s)	20, 1034
Tru1I	TTAA	6 cut(s)	110, 162, 239, 693, 828, 840
Tru9I	TTAA	6 cut(s)	110, 162, 239, 693, 828, 840
TscAI	CASTG	1 cut(s)	330
TseFI	GTSAC	1 cut(s)	526
TseI	GCWGC	3 cut(s)	421, 572, 726
Tsp45I	GTSAC	1 cut(s)	526
TspDTI	ATGAA	5 cut(s)	26, 308, 396, 618, 885
TspGWI	ACGGA	1 cut(s)	771
TspMI	CCCGGG	1 cut(s)	770
TspRI	CASTG	1 cut(s)	330
VpaK11BI	GGWCC	2 cut(s)	119, 671
XapI	RAATTY	3 cut(s)	281, 604, 625
XbaI	TCTAGA	1 cut(s)	47
XceI	RCATGY	2 cut(s)	616, 972
XmaI	CCCGGG	1 cut(s)	770
XmiI	GTMKAC	1 cut(s)	735
XspI	CTAG	6 cut(s)	17, 48, 531, 567, 762, 945
Zsp2I	ATGCAT	1 cut(s)	970

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.