Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0008586

Physical Location & Seq

Genomic Coordinates Reverse (-)

27486964 .. 27488573

Gene Structure 1610 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG260900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGGGTAGATCTCCTTGTTGTGATGATCAGAGTGGTTTGAAGAAAGGTCCATGGACAACTGAAGAAGATCAGAAGTTGGTTGATTACATTAACTCAAATGGCCATGGAAGCTGGAGAGCTCTCCCCAAGCTTGCAGGCCTCAACAGGTGTGGCAAGAGTTGCAGGTTAAGGTGGACTAATTACCTGAGGCCTGATATCAAGAGAGGTAAATTCTCCGAAGAAGAGGAAAGAGTTATCATCAACCTTCATGCAGTTGTTGGGAACAAGTGGTCTAAGATTGCTACTCATCTTCCGGGGCGAACTGATAATGAAATCAAGAACTTTTGGAATACTCACCTGAGAAAGAAGCTGCTACAAATGGGACTTGATCCAAACACCCACAAGCCAAGGACAGACCTCAATCACCTTCTGAATCTTTCGCAGTTGCTTAGCACGGCGAACGTTGGCAACATGATGACTAGTACTCCTTGGGACAATGCACTAAGGCTACAAGCAAGTGCTGCACAGCTAGCAAAAATGCAATTACTGCAAAATTTATACATGCAGGTTATAAATTCGTCAGTTGCACCTGATATAGACAACAAGACTAGTACTGGTCTTTTTGGTTCTCAGAATATTAACCTCTTTGGAGGGAACTTCAGCGGAGCAAGCACTATGGTAGGAGGTCAAGAATGGAATCCTGATAGCATCCCTGGAGCACCTAATGAGTTAAACACTATTTCCAACTCACTGGAAGGGTTTGAAGGACTGAATAGCAATATTAACACCAACTTGATGAGCAGCTGCTATGATATCCAGAGCTTTAAGAACCAATTTGCTGAATTAGTTTCAGCATCATCTCCTGGGAGTTCCACTACCAATAACCAAATCGAAAGCACGAGTACAGGTGATATTCCAGCTGCAGGTCAGTCATCACCCACCTCCATCTTTGAGGCTTGGGAGAAACTCATGGATGATGATACGAGTGAATCCTACTGGAAAGATATTCTCCAATCAATGTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

334

Amino Acids

36.86

Weight (kDa)

5.9

Isoelectric Point (pI)

46.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	15 - 62	2.6e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	18 - 77	6.3e-12	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	68 - 113	5e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	71 - 116	2.1e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008586)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02940 AT3G02940 AT3G02940 AT5G16770 AT5G16770 AT5G16770 AT5G16770
fragaria_vesca	FvH4_5g22510
malus_domestica	MD06G1037300.v1.1 MD16G1271400.v1.1
prunus_persica	Prupe.5G031700_v2.0.a1
pyrus_communis	pycom06g03080 pycom16g24100
rosa_chinensis	RchiOBHm_Chr7g0210281
rosa_laevigata	RLG00000003052
rosa_multiflora	Rmu_sc0003639.1_g000007 Rmu_sc0007188.1_g000001
rosa_roxburghii	Rroxscaffold_3G00248460
rosa_rugosa	Rorug07G0120400
rosa_samantha	Rh7AG253300 Rh7CG270200 Rh7DG260900
rosa_wichuraiana	Rw7G021590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	551
Acc36I	ACCTGC	3 cut(s)	153, 535, 893
AciI	CCGC	1 cut(s)	642
AclI	AACGTT	1 cut(s)	441
AclWI	GGATC	1 cut(s)	362
AcoI	YGGCCR	1 cut(s)	100
AcsI	RAATTY	3 cut(s)	209, 532, 553
AcuI	CTGAAG	2 cut(s)	81, 622
AfaI	GTAC	3 cut(s)	463, 592, 883
AfiI	CCNNNNNNNGG	1 cut(s)	902
AgsI	TTSAA	2 cut(s)	40, 743
AhlI	ACTAGT	2 cut(s)	458, 587
AjnI	CCWGG	2 cut(s)	691, 841
AluBI	AGCT	8 cut(s)	111, 119, 130, 349, 508, 783, 801, 899
AluI	AGCT	8 cut(s)	111, 119, 130, 349, 508, 783, 801, 899
Alw21I	GWGCWC	2 cut(s)	121, 700
AlwI	GGATC	1 cut(s)	362
AoxI	GGCC	3 cut(s)	100, 136, 188
ApeKI	GCWGC	5 cut(s)	349, 500, 780, 783, 899
ApoI	RAATTY	3 cut(s)	209, 532, 553
AspS9I	GGNCC	1 cut(s)	47
AsuC2I	CCSGG	1 cut(s)	294
AsuHPI	GGTGA	4 cut(s)	326, 395, 899, 906
AsuNHI	GCTAGC	1 cut(s)	508
AvaII	GGWCC	1 cut(s)	47
AxyI	CCTNAGG	1 cut(s)	185
BalI	TGGCCA	1 cut(s)	102
BanII	GRGCYC	1 cut(s)	121
BauI	CACGAG	1 cut(s)	877
Bbv12I	GWGCWC	2 cut(s)	121, 700
BbvI	GCAGC	5 cut(s)	336, 487, 770, 792, 886
BccI	CCATC	1 cut(s)	932
BceAI	ACGGC	1 cut(s)	450
BciT130I	CCWGG	2 cut(s)	693, 843
BclI	TGATCA	1 cut(s)	25
BcnI	CCSGG	1 cut(s)	294
BcuI	ACTAGT	2 cut(s)	458, 587
BfaI	CTAG	3 cut(s)	459, 509, 588
BfmI	CTRYAG	1 cut(s)	900
BfuAI	ACCTGC	3 cut(s)	153, 535, 893
BglII	AGATCT	1 cut(s)	8
BisI	GCNGC	5 cut(s)	350, 501, 781, 784, 900
BlpI	GCTNAGC	1 cut(s)	428
BlsI	GCNGC	5 cut(s)	351, 502, 782, 785, 901
BmcAI	AGTACT	2 cut(s)	463, 592
Bme1390I	CCNGG	3 cut(s)	294, 693, 843
Bme18I	GGWCC	1 cut(s)	47
BmgT120I	GGNCC	1 cut(s)	47
BmrFI	CCNGG	3 cut(s)	294, 693, 843
BmsI	GCATC	2 cut(s)	696, 842
BmtI	GCTAGC	1 cut(s)	512
BpmI	CTGGAG	2 cut(s)	133, 714
Bpu1102I	GCTNAGC	1 cut(s)	428
BpuMI	CCSGG	1 cut(s)	294
BsaJI	CCNNGG	7 cut(s)	50, 103, 293, 386, 467, 691, 842
BsaXI	ACNNNNNCTCC	2 cut(s)	448, 478
Bsc4I	CCNNNNNNNGG	1 cut(s)	902
Bse1I	ACTGG	3 cut(s)	598, 735, 980
Bse21I	CCTNAGG	1 cut(s)	185
BseBI	CCWGG	2 cut(s)	693, 843
BseDI	CCNNGG	7 cut(s)	50, 103, 293, 386, 467, 691, 842
BseGI	GGATG	2 cut(s)	687, 958
BseLI	CCNNNNNNNGG	1 cut(s)	902
BseMII	CTCAG	3 cut(s)	176, 329, 623
BseNI	ACTGG	3 cut(s)	598, 735, 980
BseXI	GCAGC	5 cut(s)	336, 487, 770, 792, 886
BsgI	GTGCAG	1 cut(s)	486
BshFI	GGCC	3 cut(s)	102, 138, 190
BsiHKAI	GWGCWC	2 cut(s)	121, 700
BsiSI	CCGG	1 cut(s)	293
BslFI	GGGAC	2 cut(s)	375, 485
BslI	CCNNNNNNNGG	1 cut(s)	902
BsmFI	GGGAC	2 cut(s)	375, 485
BsnI	GGCC	3 cut(s)	102, 138, 190
Bsp1286I	GDGCHC	2 cut(s)	121, 700
Bsp143I	GATC	4 cut(s)	8, 25, 67, 367
Bsp1720I	GCTNAGC	1 cut(s)	428
Bsp19I	CCATGG	2 cut(s)	50, 103
BspACI	CCGC	1 cut(s)	642
BspANI	GGCC	3 cut(s)	102, 138, 190
BspCNI	CTCAG	3 cut(s)	177, 330, 622
BspMAI	CTGCAG	1 cut(s)	904
BspMI	ACCTGC	3 cut(s)	153, 535, 893
BspOI	GCTAGC	1 cut(s)	512
BspPI	GGATC	1 cut(s)	362
BsrI	ACTGG	3 cut(s)	598, 735, 980
BssECI	CCNNGG	7 cut(s)	50, 103, 293, 386, 467, 691, 842
BssMI	GATC	4 cut(s)	8, 25, 67, 367
BssSI	CACGAG	1 cut(s)	877
BssT1I	CCWWGG	4 cut(s)	50, 103, 386, 467
Bst2BI	CACGAG	1 cut(s)	877
Bst2UI	CCWGG	2 cut(s)	693, 843
Bst6I	CTCTTC	1 cut(s)	216
BstAPI	GCANNNNNTGC	3 cut(s)	159, 500, 526
BstC8I	GCNNGC	4 cut(s)	132, 136, 510, 649
BstDEI	CTNAG	6 cut(s)	185, 273, 338, 428, 482, 609
BstDSI	CCRYGG	2 cut(s)	50, 103
BstF5I	GGATG	2 cut(s)	687, 958
BstKTI	GATC	4 cut(s)	11, 28, 70, 370
BstMBI	GATC	4 cut(s)	8, 25, 67, 367
BstMWI	GCNNNNNNNGC	6 cut(s)	108, 159, 500, 509, 526, 648
BstNI	CCWGG	2 cut(s)	693, 843
BstNSI	RCATGY	1 cut(s)	544
BstSCI	CCNGG	3 cut(s)	292, 691, 841
BstSFI	CTRYAG	1 cut(s)	900
BstV1I	GCAGC	5 cut(s)	336, 487, 770, 792, 886
BstX2I	RGATCY	1 cut(s)	8
BstXI	CCANNNNNNTGG	1 cut(s)	730
BstYI	RGATCY	1 cut(s)	8
Bsu36I	CCTNAGG	1 cut(s)	185
BsuRI	GGCC	3 cut(s)	102, 138, 190
BtgI	CCRYGG	2 cut(s)	50, 103
BtsCI	GGATG	2 cut(s)	687, 958
BtsIMutI	CAGTG	1 cut(s)	728
BveI	ACCTGC	3 cut(s)	153, 535, 893
Cac8I	GCNNGC	4 cut(s)	132, 136, 510, 649
Cfr13I	GGNCC	1 cut(s)	47
Csp6I	GTAC	3 cut(s)	462, 591, 882
CspCI	CAANNNNNGTGG	2 cut(s)	130, 165
CviAII	CATG	6 cut(s)	51, 104, 248, 451, 541, 949
CviQI	GTAC	3 cut(s)	462, 591, 882
DdeI	CTNAG	6 cut(s)	185, 273, 338, 428, 482, 609
DpnI	GATC	4 cut(s)	10, 27, 69, 369
DpnII	GATC	4 cut(s)	8, 25, 67, 367
EaeI	YGGCCR	1 cut(s)	100
Eam1104I	CTCTTC	1 cut(s)	216
EarI	CTCTTC	1 cut(s)	216
Ecl136II	GAGCTC	1 cut(s)	119
Eco130I	CCWWGG	4 cut(s)	50, 103, 386, 467
Eco147I	AGGCCT	2 cut(s)	138, 190
Eco24I	GRGCYC	1 cut(s)	121
Eco32I	GATATC	2 cut(s)	196, 793
Eco47I	GGWCC	1 cut(s)	47
Eco53kI	GAGCTC	1 cut(s)	119
Eco57I	CTGAAG	2 cut(s)	81, 622
Eco81I	CCTNAGG	1 cut(s)	185
EcoICRI	GAGCTC	1 cut(s)	119
EcoRII	CCWGG	2 cut(s)	691, 841
EcoRV	GATATC	2 cut(s)	196, 793
EcoT14I	CCWWGG	4 cut(s)	50, 103, 386, 467
EcoT38I	GRGCYC	1 cut(s)	121
ErhI	CCWWGG	4 cut(s)	50, 103, 386, 467
FaeI	CATG	6 cut(s)	54, 107, 251, 454, 544, 952
FaqI	GGGAC	2 cut(s)	375, 485
FatI	CATG	6 cut(s)	50, 103, 247, 450, 540, 948
FbaI	TGATCA	1 cut(s)	25
Fnu4HI	GCNGC	5 cut(s)	350, 501, 781, 784, 900
FokI	GGATG	2 cut(s)	674, 965
FriOI	GRGCYC	1 cut(s)	121
Fsp4HI	GCNGC	5 cut(s)	350, 501, 781, 784, 900
FspBI	CTAG	3 cut(s)	459, 509, 588
GluI	GCNGC	5 cut(s)	350, 501, 781, 784, 900
GsuI	CTGGAG	2 cut(s)	133, 714
HaeIII	GGCC	3 cut(s)	102, 138, 190
HapII	CCGG	1 cut(s)	293
Hin1II	CATG	6 cut(s)	54, 107, 251, 454, 544, 952
HindIII	AAGCTT	1 cut(s)	128
HinfI	GANTC	3 cut(s)	412, 676, 968
HpaII	CCGG	1 cut(s)	293
HphI	GGTGA	4 cut(s)	326, 395, 899, 906
Hpy166II	GTNNAC	1 cut(s)	174
Hpy188I	TCNGA	5 cut(s)	30, 72, 217, 411, 612
Hpy188III	TCNNGA	5 cut(s)	199, 316, 668, 680, 796
Hpy8I	GTNNAC	1 cut(s)	174
HpyAV	CCTTC	4 cut(s)	254, 416, 728, 737
HpyCH4IV	ACGT	1 cut(s)	441
HpyF10VI	GCNNNNNNNGC	6 cut(s)	108, 159, 500, 509, 526, 648
HpyF3I	CTNAG	6 cut(s)	185, 273, 338, 428, 482, 609
HpySE526I	ACGT	1 cut(s)	441
Hsp92II	CATG	6 cut(s)	54, 107, 251, 454, 544, 952
Ksp22I	TGATCA	1 cut(s)	25
Kzo9I	GATC	4 cut(s)	8, 25, 67, 367
LmnI	GCTCC	2 cut(s)	644, 695
Lsp1109I	GCAGC	5 cut(s)	336, 487, 770, 792, 886
LweI	GCATC	2 cut(s)	696, 842
MaeI	CTAG	3 cut(s)	459, 509, 588
MaeII	ACGT	1 cut(s)	441
MalI	GATC	4 cut(s)	10, 27, 69, 369
MboI	GATC	4 cut(s)	8, 25, 67, 367
MboII	GAAGA	6 cut(s)	52, 74, 77, 230, 233, 281
MflI	RGATCY	1 cut(s)	8
MhlI	GDGCHC	2 cut(s)	121, 700
MlsI	TGGCCA	1 cut(s)	102
MluCI	AATT	7 cut(s)	178, 209, 521, 532, 553, 812, 821
MluNI	TGGCCA	1 cut(s)	102
MmeI	TCCRAC	1 cut(s)	747
Mox20I	TGGCCA	1 cut(s)	102
MscI	TGGCCA	1 cut(s)	102
MseI	TTAA	6 cut(s)	90, 167, 618, 710, 762, 804
Msp20I	TGGCCA	1 cut(s)	102
MspA1I	CMGCKG	3 cut(s)	642, 783, 899
MspI	CCGG	1 cut(s)	293
MspR9I	CCNGG	3 cut(s)	294, 693, 843
MvaI	CCWGG	2 cut(s)	693, 843
MwoI	GCNNNNNNNGC	6 cut(s)	108, 159, 500, 509, 526, 648
NciI	CCSGG	1 cut(s)	294
NcoI	CCATGG	2 cut(s)	50, 103
NdeII	GATC	4 cut(s)	8, 25, 67, 367
NheI	GCTAGC	1 cut(s)	508
NlaIII	CATG	6 cut(s)	54, 107, 251, 454, 544, 952
NspI	RCATGY	1 cut(s)	544
PceI	AGGCCT	2 cut(s)	138, 190
PfeI	GAWTC	3 cut(s)	412, 676, 968
PkrI	GCNGC	5 cut(s)	351, 502, 782, 785, 901
PsiI	TTATAA	1 cut(s)	551
Psp124BI	GAGCTC	1 cut(s)	121
Psp1406I	AACGTT	1 cut(s)	441
Psp6I	CCWGG	2 cut(s)	691, 841
PspGI	CCWGG	2 cut(s)	691, 841
PspPI	GGNCC	1 cut(s)	47
PstI	CTGCAG	1 cut(s)	904
PsuI	RGATCY	1 cut(s)	8
PvuII	CAGCTG	2 cut(s)	783, 899
RsaI	GTAC	3 cut(s)	463, 592, 883
RsaNI	GTAC	3 cut(s)	462, 591, 882
SacI	GAGCTC	1 cut(s)	121
SaqAI	TTAA	6 cut(s)	90, 167, 618, 710, 762, 804
SatI	GCNGC	5 cut(s)	350, 501, 781, 784, 900
Sau3AI	GATC	4 cut(s)	8, 25, 67, 367
Sau96I	GGNCC	1 cut(s)	47
ScaI	AGTACT	2 cut(s)	463, 592
ScrFI	CCNGG	3 cut(s)	294, 693, 843
SduI	GDGCHC	2 cut(s)	121, 700
SfaNI	GCATC	2 cut(s)	696, 842
SfcI	CTRYAG	1 cut(s)	900
SinI	GGWCC	1 cut(s)	47
SpeI	ACTAGT	2 cut(s)	458, 587
Sse9I	AATT	7 cut(s)	178, 209, 521, 532, 553, 812, 821
SseBI	AGGCCT	2 cut(s)	138, 190
SsiI	CCGC	1 cut(s)	642
SspI	AATATT	2 cut(s)	616, 760
SspMI	CTAG	3 cut(s)	459, 509, 588
SstI	GAGCTC	1 cut(s)	121
StuI	AGGCCT	2 cut(s)	138, 190
StyD4I	CCNGG	3 cut(s)	292, 691, 841
StyI	CCWWGG	4 cut(s)	50, 103, 386, 467
TaiI	ACGT	1 cut(s)	444
TaqI	TCGA	1 cut(s)	870
TasI	AATT	7 cut(s)	178, 209, 521, 532, 553, 812, 821
TatI	WGTACW	3 cut(s)	461, 590, 881
TfiI	GAWTC	3 cut(s)	412, 676, 968
Tru1I	TTAA	6 cut(s)	90, 167, 618, 710, 762, 804
Tru9I	TTAA	6 cut(s)	90, 167, 618, 710, 762, 804
TscAI	CASTG	1 cut(s)	735
TseI	GCWGC	5 cut(s)	349, 500, 780, 783, 899
TspDTI	ATGAA	2 cut(s)	236, 324
TspRI	CASTG	1 cut(s)	735
VpaK11BI	GGWCC	1 cut(s)	47
XapI	RAATTY	3 cut(s)	209, 532, 553
XceI	RCATGY	1 cut(s)	544
XspI	CTAG	3 cut(s)	459, 509, 588
ZrmI	AGTACT	2 cut(s)	463, 592

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.