Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0008586

Physical Location & Seq

Genomic Coordinates Reverse (-)

35340121 .. 35341049

Gene Structure 929 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1271400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGACACATGCAATACCTAATCCTGATAATTATCGTGCCATCTTATTTTCTTACCTTTTTCCCTGTTTGTGTATGAATATTAGCACAATGGTTGGATCCCCTTGTTGTGATGAAGAAAACAGTTTGAAGAAAGGTCGCTGGACAATGGACGAAGATGTGAAATTGACGGATTATATTAGAGGAAATGGTCATGGAAGCTGGAGAGCTCTCCCCAAGCTTGCTGGCCTCAACAGGTGTGGCAAGAGTTGCAGATTAAGGTGGACAAATTACCTGAGGCCTGATATTAAGAGAGGAAAGTTCTCCAAAGAGGAAGAACGAGTTATCATCAATCTTCATTCAGTTCTTGGAAACAAGTGGTCAAAGATTGCAACTCATCTACCAGGGAGAACGGATAACGAAATCAAGAATTACTGGAACACCCACCTGAGAAAGAAGCTCCTGCACATGGGGATTGATCCAAACACCCACAAGCCAAGGCCAAGGACTGACCTCAATCACCTCCTCGACCTTTCATGGTTGCTCAGAGCAGCAATTGTTGGCAACTCGAACATGATGACTAGTCCTTGGGACAATGCCATGAGCCTGCAAGCAGCAGCGGGTGCTGCCCAACTTGCCAAAATGCAGTTACTTCAACGTTTATACATGATGCCAGTCGTGAGCGTAGTTCCTCCTAAAAATTATAATGCAGACGTGAAGAACACTACTACTAATAGTCATTTTGGTTCTCAGCCTTCATCTGTTTGGAGGAGGGAATATGAGTGGTGCAAGTACCATACTAAGTGGTCAAAAATGGAACCAGCAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

269

Amino Acids

30.8

Weight (kDa)

9.66

Isoelectric Point (pI)

41.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	44 - 91	3.4e-13	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	47 - 106	2.6e-10	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	97 - 142	8.9e-18	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	100 - 145	5.1e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008586)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02940 AT3G02940 AT3G02940 AT5G16770 AT5G16770 AT5G16770 AT5G16770
fragaria_vesca	FvH4_5g22510
malus_domestica	MD06G1037300.v1.1 MD16G1271400.v1.1
prunus_persica	Prupe.5G031700_v2.0.a1
pyrus_communis	pycom06g03080 pycom16g24100
rosa_chinensis	RchiOBHm_Chr7g0210281
rosa_laevigata	RLG00000003052
rosa_multiflora	Rmu_sc0003639.1_g000007 Rmu_sc0007188.1_g000001
rosa_roxburghii	Rroxscaffold_3G00248460
rosa_rugosa	Rorug07G0120400
rosa_samantha	Rh7AG253300 Rh7CG270200 Rh7DG260900
rosa_wichuraiana	Rw7G021590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	681
AciI	CCGC	1 cut(s)	596
AclI	AACGTT	1 cut(s)	634
AclWI	GGATC	3 cut(s)	90, 103, 449
AfaI	GTAC	1 cut(s)	770
AfiI	CCNNNNNNNGG	1 cut(s)	445
AgsI	TTSAA	2 cut(s)	127, 632
AhlI	ACTAGT	1 cut(s)	557
AjiI	CACGTC	1 cut(s)	691
AjnI	CCWGG	1 cut(s)	379
AluBI	AGCT	4 cut(s)	198, 206, 217, 436
AluI	AGCT	4 cut(s)	198, 206, 217, 436
Alw21I	GWGCWC	1 cut(s)	208
AlwI	GGATC	3 cut(s)	90, 103, 449
AoxI	GGCC	3 cut(s)	223, 275, 476
ApeKI	GCWGC	4 cut(s)	527, 590, 593, 602
AsuHPI	GGTGA	1 cut(s)	488
AxyI	CCTNAGG	1 cut(s)	272
BamHI	GGATCC	1 cut(s)	95
BanII	GRGCYC	1 cut(s)	208
Bbv12I	GWGCWC	1 cut(s)	208
BbvI	GCAGC	4 cut(s)	539, 589, 602, 605
BccI	CCATC	1 cut(s)	47
BciT130I	CCWGG	1 cut(s)	381
BcuI	ACTAGT	1 cut(s)	557
BfaI	CTAG	1 cut(s)	558
BisI	GCNGC	4 cut(s)	528, 591, 594, 603
BlsI	GCNGC	4 cut(s)	529, 592, 595, 604
Bme1390I	CCNGG	1 cut(s)	381
BmgBI	CACGTC	1 cut(s)	691
BmiI	GGNNCC	2 cut(s)	97, 795
BmrFI	CCNGG	1 cut(s)	381
BmsI	GCATC	1 cut(s)	636
BpmI	CTGGAG	1 cut(s)	220
BsaBI	GATNNNNATC	1 cut(s)	30
BsaJI	CCNNGG	4 cut(s)	380, 473, 479, 563
Bsc4I	CCNNNNNNNGG	1 cut(s)	445
Bse1I	ACTGG	2 cut(s)	416, 650
Bse21I	CCTNAGG	1 cut(s)	272
Bse8I	GATNNNNATC	1 cut(s)	30
BseBI	CCWGG	1 cut(s)	381
BseDI	CCNNGG	4 cut(s)	380, 473, 479, 563
BseJI	GATNNNNATC	1 cut(s)	30
BseLI	CCNNNNNNNGG	1 cut(s)	445
BseMII	CTCAG	4 cut(s)	263, 416, 535, 740
BseNI	ACTGG	2 cut(s)	416, 650
BseRI	GAGGAG	2 cut(s)	491, 760
BseXI	GCAGC	4 cut(s)	539, 589, 602, 605
BsgI	GTGCAG	1 cut(s)	425
BshFI	GGCC	3 cut(s)	225, 277, 478
BsiHKAI	GWGCWC	1 cut(s)	208
BslFI	GGGAC	1 cut(s)	581
BslI	CCNNNNNNNGG	1 cut(s)	445
BsmFI	GGGAC	1 cut(s)	581
BsnI	GGCC	3 cut(s)	225, 277, 478
Bsp1286I	GDGCHC	1 cut(s)	208
Bsp143I	GATC	2 cut(s)	95, 454
BspACI	CCGC	1 cut(s)	596
BspANI	GGCC	3 cut(s)	225, 277, 478
BspCNI	CTCAG	4 cut(s)	264, 417, 534, 739
BspLI	GGNNCC	2 cut(s)	97, 795
BspPI	GGATC	3 cut(s)	90, 103, 449
BsrI	ACTGG	2 cut(s)	416, 650
BssECI	CCNNGG	4 cut(s)	380, 473, 479, 563
BssMI	GATC	2 cut(s)	95, 454
BssT1I	CCWWGG	3 cut(s)	473, 479, 563
Bst2UI	CCWGG	1 cut(s)	381
Bst4CI	ACNGT	1 cut(s)	122
BstAPI	GCANNNNNTGC	2 cut(s)	246, 599
BstC8I	GCNNGC	5 cut(s)	219, 223, 584, 588, 802
BstDEI	CTNAG	5 cut(s)	272, 425, 521, 726, 777
BstKTI	GATC	2 cut(s)	98, 457
BstMBI	GATC	2 cut(s)	95, 454
BstMWI	GCNNNNNNNGC	4 cut(s)	246, 599, 602, 611
BstNI	CCWGG	1 cut(s)	381
BstNSI	RCATGY	1 cut(s)	11
BstSCI	CCNGG	1 cut(s)	379
BstV1I	GCAGC	4 cut(s)	539, 589, 602, 605
BstX2I	RGATCY	1 cut(s)	95
BstYI	RGATCY	1 cut(s)	95
Bsu36I	CCTNAGG	1 cut(s)	272
BsuRI	GGCC	3 cut(s)	225, 277, 478
BtrI	CACGTC	1 cut(s)	691
Cac8I	GCNNGC	5 cut(s)	219, 223, 584, 588, 802
Csp6I	GTAC	1 cut(s)	769
CspCI	CAANNNNNGTGG	2 cut(s)	217, 252
CviAII	CATG	7 cut(s)	8, 191, 445, 513, 550, 577, 643
CviQI	GTAC	1 cut(s)	769
DdeI	CTNAG	5 cut(s)	272, 425, 521, 726, 777
DpnI	GATC	2 cut(s)	97, 456
DpnII	GATC	2 cut(s)	95, 454
Ecl136II	GAGCTC	1 cut(s)	206
Eco130I	CCWWGG	3 cut(s)	473, 479, 563
Eco147I	AGGCCT	1 cut(s)	277
Eco24I	GRGCYC	1 cut(s)	208
Eco53kI	GAGCTC	1 cut(s)	206
Eco81I	CCTNAGG	1 cut(s)	272
EcoICRI	GAGCTC	1 cut(s)	206
EcoRII	CCWGG	1 cut(s)	379
EcoT14I	CCWWGG	3 cut(s)	473, 479, 563
EcoT38I	GRGCYC	1 cut(s)	208
ErhI	CCWWGG	3 cut(s)	473, 479, 563
FaeI	CATG	7 cut(s)	11, 194, 448, 516, 553, 580, 646
FaqI	GGGAC	1 cut(s)	581
FatI	CATG	7 cut(s)	7, 190, 444, 512, 549, 576, 642
FauI	CCCGC	1 cut(s)	589
Fnu4HI	GCNGC	4 cut(s)	528, 591, 594, 603
FriOI	GRGCYC	1 cut(s)	208
Fsp4HI	GCNGC	4 cut(s)	528, 591, 594, 603
FspBI	CTAG	1 cut(s)	558
GluI	GCNGC	4 cut(s)	528, 591, 594, 603
GsuI	CTGGAG	1 cut(s)	220
HaeIII	GGCC	3 cut(s)	225, 277, 478
Hin1II	CATG	7 cut(s)	11, 194, 448, 516, 553, 580, 646
HindIII	AAGCTT	1 cut(s)	215
HphI	GGTGA	1 cut(s)	488
Hpy166II	GTNNAC	1 cut(s)	261
Hpy188I	TCNGA	1 cut(s)	524
Hpy188III	TCNNGA	3 cut(s)	23, 403, 655
Hpy8I	GTNNAC	1 cut(s)	261
HpyAV	CCTTC	1 cut(s)	741
HpyCH4III	ACNGT	1 cut(s)	122
HpyCH4IV	ACGT	2 cut(s)	634, 690
HpyCH4V	TGCA	8 cut(s)	11, 249, 368, 442, 586, 622, 686, 765
HpyF10VI	GCNNNNNNNGC	4 cut(s)	246, 599, 602, 611
HpyF3I	CTNAG	5 cut(s)	272, 425, 521, 726, 777
HpySE526I	ACGT	2 cut(s)	634, 690
Hsp92II	CATG	7 cut(s)	11, 194, 448, 516, 553, 580, 646
Kzo9I	GATC	2 cut(s)	95, 454
LmnI	GCTCC	1 cut(s)	441
Lsp1109I	GCAGC	4 cut(s)	539, 589, 602, 605
LweI	GCATC	1 cut(s)	636
MaeI	CTAG	1 cut(s)	558
MaeII	ACGT	2 cut(s)	634, 690
MaeIII	GTNAC	1 cut(s)	624
MalI	GATC	2 cut(s)	97, 456
MboI	GATC	2 cut(s)	95, 454
MboII	GAAGA	6 cut(s)	125, 139, 164, 323, 323, 706
MfeI	CAATTG	1 cut(s)	531
MflI	RGATCY	1 cut(s)	95
MhlI	GDGCHC	1 cut(s)	208
MluCI	AATT	6 cut(s)	28, 161, 265, 406, 531, 676
MmeI	TCCRAC	1 cut(s)	73
MseI	TTAA	2 cut(s)	254, 285
MspA1I	CMGCKG	1 cut(s)	596
MspR9I	CCNGG	1 cut(s)	381
MunI	CAATTG	1 cut(s)	531
MvaI	CCWGG	1 cut(s)	381
MwoI	GCNNNNNNNGC	4 cut(s)	246, 599, 602, 611
NdeII	GATC	2 cut(s)	95, 454
NlaIII	CATG	7 cut(s)	11, 194, 448, 516, 553, 580, 646
NlaIV	GGNNCC	2 cut(s)	97, 795
NspI	RCATGY	1 cut(s)	11
PceI	AGGCCT	1 cut(s)	277
PkrI	GCNGC	4 cut(s)	529, 592, 595, 604
PsiI	TTATAA	1 cut(s)	681
Psp124BI	GAGCTC	1 cut(s)	208
Psp1406I	AACGTT	1 cut(s)	634
Psp6I	CCWGG	1 cut(s)	379
PspGI	CCWGG	1 cut(s)	379
PspN4I	GGNNCC	2 cut(s)	97, 795
PsuI	RGATCY	1 cut(s)	95
RsaI	GTAC	1 cut(s)	770
RsaNI	GTAC	1 cut(s)	769
SacI	GAGCTC	1 cut(s)	208
SaqAI	TTAA	2 cut(s)	254, 285
SatI	GCNGC	4 cut(s)	528, 591, 594, 603
Sau3AI	GATC	2 cut(s)	95, 454
ScrFI	CCNGG	1 cut(s)	381
SduI	GDGCHC	1 cut(s)	208
SfaNI	GCATC	1 cut(s)	636
SpeI	ACTAGT	1 cut(s)	557
Sse9I	AATT	6 cut(s)	28, 161, 265, 406, 531, 676
SseBI	AGGCCT	1 cut(s)	277
SsiI	CCGC	1 cut(s)	596
SspI	AATATT	1 cut(s)	79
SspMI	CTAG	1 cut(s)	558
SstI	GAGCTC	1 cut(s)	208
StuI	AGGCCT	1 cut(s)	277
StyD4I	CCNGG	1 cut(s)	379
StyI	CCWWGG	3 cut(s)	473, 479, 563
TaaI	ACNGT	1 cut(s)	122
TaiI	ACGT	2 cut(s)	637, 693
TaqI	TCGA	2 cut(s)	504, 545
TasI	AATT	6 cut(s)	28, 161, 265, 406, 531, 676
Tru1I	TTAA	2 cut(s)	254, 285
Tru9I	TTAA	2 cut(s)	254, 285
TseI	GCWGC	4 cut(s)	527, 590, 593, 602
TspDTI	ATGAA	5 cut(s)	89, 126, 323, 501, 723
TspGWI	ACGGA	2 cut(s)	182, 404
XceI	RCATGY	1 cut(s)	11
XspI	CTAG	1 cut(s)	558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.