Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0008586

Physical Location & Seq

Genomic Coordinates Forward (+)

41780001 .. 41790835

Gene Structure 10835 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00248460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGGGTAGATCCCCTTGTTGTGATGATCAGAGTGGTTTGAAGAAAGGTCCATGGACAACCGAAGAAGATCAGAAGTTGGTTGATTACATTAACACAAATGGCCATGGAAGCTGGAGAGCTCTCCCCAAGCTTGCAGGCCTCAACAGGTGTGGCAAGAGTTGCAGGTTAAGGTGGACTAATTACCTGAGGCCTGATATCAAGAGAGGTAAATTCTCGGAAGAAGAGGAAAGAGTTATCATCAACCTTCATGCAGTTGTTGGGAACAAGTACGTTTTATTTCTCTCATTCTTTCTTGCAAATAACTTGTGGTCTAAGATTGCTACTCATCTTCCGGGGCGAACTGATAATGAAATCAAGAACTTTTGGAACACTCACCTGAGAAAGAAGATGCTACAAATGGGACTTGATCCAAACACCCACAAGCCAAGGACAGACCTCAATCACCTTCTGAATCTTTCGCAGTTGCTTAGCACGGCGAACGTTGGCAACATGATGACTAGTACTCCTTGGGACAATGCACTAAGGCTACAAGCAAGTGCTGCACAGCTAGCAAAAATGCAATTATTGCAAAATTTATACATGCAGGTTATAAATTCATCAGTTGCACCTGATATAGACAACAAGACTAGTACTGGTCTTTTTGGTTCTCAGAATATTAACCTCTTTGGAGGGAACTTCAGCGGAGCAAACACTATGGTAAGAGGTCAAGAATGGAACCCTGATATCATCCCTGGAGCACCTAATGAGTTAAACACTATTTCCAACTCACTGGAAGGGTTTGAAGGACTGAATAGCAATATCGACACCAACTTGATGAGCAGCTGCTATGATATCCAGAGCTTTAAGAATCAATTTGCTGAATTAGTTTCAGCATCATCTCCTGGGAGTTCCACTACCAATAACCAAATCGAAAGCATGAGTATGGGTGATATTCCAGCTGCAGGTCAGTCATCACCCACCTCCATCTTTGAGGCTTGGGAGAAGCTCATGGATGATGATACGAGTGAATCCTACTGGAAAGATATTCTGCAAACCTTTGCCGGACGTTTTCCTTTGTCCGCCGCGGTCTCTATGGGGCGGCTTCCTAATGCCTCACTTAGCTGCAACGGCTTGCTACAATGCCTGTCTCTACTGCCATGTCAGCAGTTAACAGAGGTTCTTAACGGTGAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

391

Amino Acids

43.28

Weight (kDa)

5.76

Isoelectric Point (pI)

44.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	15 - 62	1.8e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	18 - 77	4.2e-12	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	68 - 126	1.1e-13	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008586)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02940 AT3G02940 AT3G02940 AT5G16770 AT5G16770 AT5G16770 AT5G16770
fragaria_vesca	FvH4_5g22510
malus_domestica	MD06G1037300.v1.1 MD16G1271400.v1.1
prunus_persica	Prupe.5G031700_v2.0.a1
pyrus_communis	pycom06g03080 pycom16g24100
rosa_chinensis	RchiOBHm_Chr7g0210281
rosa_laevigata	RLG00000003052
rosa_multiflora	Rmu_sc0003639.1_g000007 Rmu_sc0007188.1_g000001
rosa_roxburghii	Rroxscaffold_3G00248460
rosa_rugosa	Rorug07G0120400
rosa_samantha	Rh7AG253300 Rh7CG270200 Rh7DG260900
rosa_wichuraiana	Rw7G021590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	590
Acc36I	ACCTGC	3 cut(s)	153, 574, 932
AccII	CGCG	1 cut(s)	1064
AciI	CCGC	5 cut(s)	681, 1059, 1062, 1064, 1078
AclI	AACGTT	1 cut(s)	480
AclWI	GGATC	2 cut(s)	3, 401
AcoI	YGGCCR	1 cut(s)	100
AcsI	RAATTY	3 cut(s)	209, 571, 592
AcuI	CTGAAG	1 cut(s)	661
AfaI	GTAC	3 cut(s)	269, 502, 631
AfiI	CCNNNNNNNGG	1 cut(s)	941
AgsI	TTSAA	2 cut(s)	40, 782
AhlI	ACTAGT	2 cut(s)	497, 626
AjnI	CCWGG	2 cut(s)	730, 880
AluBI	AGCT	9 cut(s)	111, 119, 130, 547, 822, 840, 938, 985, 1101
AluI	AGCT	9 cut(s)	111, 119, 130, 547, 822, 840, 938, 985, 1101
Alw21I	GWGCWC	2 cut(s)	121, 739
Alw26I	GTCTC	2 cut(s)	1072, 1131
AlwI	GGATC	2 cut(s)	3, 401
AoxI	GGCC	3 cut(s)	100, 136, 188
ApeKI	GCWGC	5 cut(s)	539, 819, 822, 938, 1101
ApoI	RAATTY	3 cut(s)	209, 571, 592
AspS9I	GGNCC	1 cut(s)	47
AsuC2I	CCSGG	1 cut(s)	333
AsuHPI	GGTGA	4 cut(s)	365, 434, 938, 945
AsuNHI	GCTAGC	1 cut(s)	547
AvaII	GGWCC	1 cut(s)	47
AxyI	CCTNAGG	1 cut(s)	185
BalI	TGGCCA	1 cut(s)	102
BanII	GRGCYC	1 cut(s)	121
Bbv12I	GWGCWC	2 cut(s)	121, 739
BbvI	GCAGC	5 cut(s)	526, 809, 831, 925, 1088
BccI	CCATC	1 cut(s)	971
BceAI	ACGGC	2 cut(s)	489, 1123
BciT130I	CCWGG	2 cut(s)	732, 882
BclI	TGATCA	1 cut(s)	25
BcnI	CCSGG	1 cut(s)	333
BcoDI	GTCTC	2 cut(s)	1072, 1131
BcuI	ACTAGT	2 cut(s)	497, 626
BfaI	CTAG	3 cut(s)	498, 548, 627
BfmI	CTRYAG	1 cut(s)	939
BfuAI	ACCTGC	3 cut(s)	153, 574, 932
BisI	GCNGC	7 cut(s)	540, 820, 823, 939, 1062, 1079, 1102
BlpI	GCTNAGC	1 cut(s)	467
BlsI	GCNGC	7 cut(s)	541, 821, 824, 940, 1063, 1080, 1103
BmcAI	AGTACT	2 cut(s)	502, 631
Bme1390I	CCNGG	3 cut(s)	333, 732, 882
Bme18I	GGWCC	1 cut(s)	47
BmgT120I	GGNCC	1 cut(s)	47
BmiI	GGNNCC	1 cut(s)	716
BmrFI	CCNGG	3 cut(s)	333, 732, 882
BmsI	GCATC	2 cut(s)	378, 881
BmtI	GCTAGC	1 cut(s)	551
BpmI	CTGGAG	2 cut(s)	133, 753
Bpu1102I	GCTNAGC	1 cut(s)	467
BpuMI	CCSGG	1 cut(s)	333
BsaI	GGTCTC	1 cut(s)	1072
BsaJI	CCNNGG	8 cut(s)	50, 103, 332, 425, 506, 730, 881, 1062
BsaXI	ACNNNNNCTCC	2 cut(s)	487, 517
Bsc4I	CCNNNNNNNGG	1 cut(s)	941
Bse1I	ACTGG	3 cut(s)	637, 774, 1019
Bse21I	CCTNAGG	1 cut(s)	185
BseBI	CCWGG	2 cut(s)	732, 882
BseDI	CCNNGG	8 cut(s)	50, 103, 332, 425, 506, 730, 881, 1062
BseGI	GGATG	2 cut(s)	726, 997
BseLI	CCNNNNNNNGG	1 cut(s)	941
BseMII	CTCAG	3 cut(s)	176, 368, 662
BseNI	ACTGG	3 cut(s)	637, 774, 1019
BseXI	GCAGC	5 cut(s)	526, 809, 831, 925, 1088
BsgI	GTGCAG	1 cut(s)	525
Bsh1236I	CGCG	1 cut(s)	1064
BshFI	GGCC	3 cut(s)	102, 138, 190
BsiHKAI	GWGCWC	2 cut(s)	121, 739
BsiSI	CCGG	2 cut(s)	332, 1041
BslFI	GGGAC	2 cut(s)	414, 524
BslI	CCNNNNNNNGG	1 cut(s)	941
BsmAI	GTCTC	2 cut(s)	1072, 1131
BsmFI	GGGAC	2 cut(s)	414, 524
BsnI	GGCC	3 cut(s)	102, 138, 190
Bso31I	GGTCTC	1 cut(s)	1072
Bsp1286I	GDGCHC	2 cut(s)	121, 739
Bsp143I	GATC	4 cut(s)	8, 25, 67, 406
Bsp1720I	GCTNAGC	1 cut(s)	467
Bsp19I	CCATGG	2 cut(s)	50, 103
BspACI	CCGC	5 cut(s)	681, 1059, 1062, 1064, 1078
BspANI	GGCC	3 cut(s)	102, 138, 190
BspCNI	CTCAG	3 cut(s)	177, 369, 661
BspFNI	CGCG	1 cut(s)	1064
BspLI	GGNNCC	1 cut(s)	716
BspMAI	CTGCAG	1 cut(s)	943
BspMI	ACCTGC	3 cut(s)	153, 574, 932
BspOI	GCTAGC	1 cut(s)	551
BspPI	GGATC	2 cut(s)	3, 401
BspTNI	GGTCTC	1 cut(s)	1072
BsrI	ACTGG	3 cut(s)	637, 774, 1019
BssECI	CCNNGG	8 cut(s)	50, 103, 332, 425, 506, 730, 881, 1062
BssMI	GATC	4 cut(s)	8, 25, 67, 406
BssT1I	CCWWGG	4 cut(s)	50, 103, 425, 506
Bst2UI	CCWGG	2 cut(s)	732, 882
Bst4CI	ACNGT	1 cut(s)	1166
Bst6I	CTCTTC	1 cut(s)	216
BstAPI	GCANNNNNTGC	3 cut(s)	159, 539, 565
BstC8I	GCNNGC	4 cut(s)	132, 136, 549, 1112
BstDEI	CTNAG	7 cut(s)	185, 312, 377, 467, 521, 648, 1097
BstDSI	CCRYGG	3 cut(s)	50, 103, 1062
BstF5I	GGATG	2 cut(s)	726, 997
BstFNI	CGCG	1 cut(s)	1064
BstKTI	GATC	4 cut(s)	11, 28, 70, 409
BstMAI	GTCTC	2 cut(s)	1072, 1131
BstMBI	GATC	4 cut(s)	8, 25, 67, 406
BstMWI	GCNNNNNNNGC	7 cut(s)	108, 159, 539, 548, 565, 1107, 1141
BstNI	CCWGG	2 cut(s)	732, 882
BstNSI	RCATGY	1 cut(s)	583
BstSCI	CCNGG	3 cut(s)	331, 730, 880
BstSFI	CTRYAG	1 cut(s)	939
BstUI	CGCG	1 cut(s)	1064
BstV1I	GCAGC	5 cut(s)	526, 809, 831, 925, 1088
BstX2I	RGATCY	1 cut(s)	8
BstXI	CCANNNNNNTGG	1 cut(s)	769
BstYI	RGATCY	1 cut(s)	8
Bsu36I	CCTNAGG	1 cut(s)	185
BsuRI	GGCC	3 cut(s)	102, 138, 190
BtgI	CCRYGG	3 cut(s)	50, 103, 1062
BtsCI	GGATG	2 cut(s)	726, 997
BtsIMutI	CAGTG	1 cut(s)	767
BveI	ACCTGC	3 cut(s)	153, 574, 932
Cac8I	GCNNGC	4 cut(s)	132, 136, 549, 1112
Cfr13I	GGNCC	1 cut(s)	47
Cfr42I	CCGCGG	1 cut(s)	1065
Csp6I	GTAC	3 cut(s)	268, 501, 630
CspCI	CAANNNNNGTGG	2 cut(s)	130, 165
CviAII	CATG	8 cut(s)	51, 104, 248, 490, 580, 916, 988, 1137
CviQI	GTAC	3 cut(s)	268, 501, 630
DdeI	CTNAG	7 cut(s)	185, 312, 377, 467, 521, 648, 1097
DpnI	GATC	4 cut(s)	10, 27, 69, 408
DpnII	GATC	4 cut(s)	8, 25, 67, 406
EaeI	YGGCCR	1 cut(s)	100
Eam1104I	CTCTTC	1 cut(s)	216
EarI	CTCTTC	1 cut(s)	216
EciI	GGCGGA	1 cut(s)	1048
Ecl136II	GAGCTC	1 cut(s)	119
Eco130I	CCWWGG	4 cut(s)	50, 103, 425, 506
Eco147I	AGGCCT	2 cut(s)	138, 190
Eco24I	GRGCYC	1 cut(s)	121
Eco31I	GGTCTC	1 cut(s)	1072
Eco32I	GATATC	3 cut(s)	196, 724, 832
Eco47I	GGWCC	1 cut(s)	47
Eco53kI	GAGCTC	1 cut(s)	119
Eco57I	CTGAAG	1 cut(s)	661
Eco81I	CCTNAGG	1 cut(s)	185
EcoICRI	GAGCTC	1 cut(s)	119
EcoRII	CCWGG	2 cut(s)	730, 880
EcoRV	GATATC	3 cut(s)	196, 724, 832
EcoT14I	CCWWGG	4 cut(s)	50, 103, 425, 506
EcoT38I	GRGCYC	1 cut(s)	121
ErhI	CCWWGG	4 cut(s)	50, 103, 425, 506
FaeI	CATG	8 cut(s)	54, 107, 251, 493, 583, 919, 991, 1140
FaqI	GGGAC	2 cut(s)	414, 524
FatI	CATG	8 cut(s)	50, 103, 247, 489, 579, 915, 987, 1136
FbaI	TGATCA	1 cut(s)	25
Fnu4HI	GCNGC	7 cut(s)	540, 820, 823, 939, 1062, 1079, 1102
FokI	GGATG	2 cut(s)	713, 1004
FriOI	GRGCYC	1 cut(s)	121
Fsp4HI	GCNGC	7 cut(s)	540, 820, 823, 939, 1062, 1079, 1102
FspBI	CTAG	3 cut(s)	498, 548, 627
GluI	GCNGC	7 cut(s)	540, 820, 823, 939, 1062, 1079, 1102
GsuI	CTGGAG	2 cut(s)	133, 753
HaeIII	GGCC	3 cut(s)	102, 138, 190
HapII	CCGG	2 cut(s)	332, 1041
Hin1II	CATG	8 cut(s)	54, 107, 251, 493, 583, 919, 991, 1140
HincII	GTYRAC	1 cut(s)	1149
HindII	GTYRAC	1 cut(s)	1149
HindIII	AAGCTT	1 cut(s)	128
HinfI	GANTC	3 cut(s)	451, 847, 1007
HpaI	GTTAAC	1 cut(s)	1149
HpaII	CCGG	2 cut(s)	332, 1041
HphI	GGTGA	4 cut(s)	365, 434, 938, 945
Hpy166II	GTNNAC	2 cut(s)	174, 1149
Hpy188I	TCNGA	5 cut(s)	30, 72, 217, 450, 651
Hpy188III	TCNNGA	4 cut(s)	199, 355, 707, 835
Hpy8I	GTNNAC	2 cut(s)	174, 1149
HpyAV	CCTTC	4 cut(s)	254, 455, 767, 776
HpyCH4III	ACNGT	1 cut(s)	1166
HpyCH4IV	ACGT	3 cut(s)	270, 480, 1045
HpyF10VI	GCNNNNNNNGC	7 cut(s)	108, 159, 539, 548, 565, 1107, 1141
HpyF3I	CTNAG	7 cut(s)	185, 312, 377, 467, 521, 648, 1097
HpySE526I	ACGT	3 cut(s)	270, 480, 1045
Hsp92II	CATG	8 cut(s)	54, 107, 251, 493, 583, 919, 991, 1140
Ksp22I	TGATCA	1 cut(s)	25
KspAI	GTTAAC	1 cut(s)	1149
KspI	CCGCGG	1 cut(s)	1065
Kzo9I	GATC	4 cut(s)	8, 25, 67, 406
LmnI	GCTCC	2 cut(s)	683, 734
Lsp1109I	GCAGC	5 cut(s)	526, 809, 831, 925, 1088
LweI	GCATC	2 cut(s)	378, 881
MaeI	CTAG	3 cut(s)	498, 548, 627
MaeII	ACGT	3 cut(s)	270, 480, 1045
MalI	GATC	4 cut(s)	10, 27, 69, 408
MboI	GATC	4 cut(s)	8, 25, 67, 406
MboII	GAAGA	7 cut(s)	52, 74, 77, 230, 233, 320, 397
MflI	RGATCY	1 cut(s)	8
MhlI	GDGCHC	2 cut(s)	121, 739
MlsI	TGGCCA	1 cut(s)	102
MluCI	AATT	7 cut(s)	178, 209, 560, 571, 592, 851, 860
MluNI	TGGCCA	1 cut(s)	102
MmeI	TCCRAC	1 cut(s)	786
Mox20I	TGGCCA	1 cut(s)	102
MscI	TGGCCA	1 cut(s)	102
MseI	TTAA	7 cut(s)	90, 167, 657, 749, 843, 1148, 1161
MslI	CAYNNNNRTG	1 cut(s)	920
Msp20I	TGGCCA	1 cut(s)	102
MspA1I	CMGCKG	4 cut(s)	681, 822, 938, 1064
MspI	CCGG	2 cut(s)	332, 1041
MspR9I	CCNGG	3 cut(s)	333, 732, 882
MvaI	CCWGG	2 cut(s)	732, 882
MvnI	CGCG	1 cut(s)	1064
MwoI	GCNNNNNNNGC	7 cut(s)	108, 159, 539, 548, 565, 1107, 1141
NciI	CCSGG	1 cut(s)	333
NcoI	CCATGG	2 cut(s)	50, 103
NdeII	GATC	4 cut(s)	8, 25, 67, 406
NheI	GCTAGC	1 cut(s)	547
NlaIII	CATG	8 cut(s)	54, 107, 251, 493, 583, 919, 991, 1140
NlaIV	GGNNCC	1 cut(s)	716
NspI	RCATGY	1 cut(s)	583
PceI	AGGCCT	2 cut(s)	138, 190
PfeI	GAWTC	3 cut(s)	451, 847, 1007
PkrI	GCNGC	7 cut(s)	541, 821, 824, 940, 1063, 1080, 1103
PsiI	TTATAA	1 cut(s)	590
Psp124BI	GAGCTC	1 cut(s)	121
Psp1406I	AACGTT	1 cut(s)	480
Psp6I	CCWGG	2 cut(s)	730, 880
PspGI	CCWGG	2 cut(s)	730, 880
PspN4I	GGNNCC	1 cut(s)	716
PspPI	GGNCC	1 cut(s)	47
PstI	CTGCAG	1 cut(s)	943
PsuI	RGATCY	1 cut(s)	8
PvuII	CAGCTG	2 cut(s)	822, 938
RsaI	GTAC	3 cut(s)	269, 502, 631
RsaNI	GTAC	3 cut(s)	268, 501, 630
RseI	CAYNNNNRTG	1 cut(s)	920
SacI	GAGCTC	1 cut(s)	121
SacII	CCGCGG	1 cut(s)	1065
SaqAI	TTAA	7 cut(s)	90, 167, 657, 749, 843, 1148, 1161
SatI	GCNGC	7 cut(s)	540, 820, 823, 939, 1062, 1079, 1102
Sau3AI	GATC	4 cut(s)	8, 25, 67, 406
Sau96I	GGNCC	1 cut(s)	47
ScaI	AGTACT	2 cut(s)	502, 631
ScrFI	CCNGG	3 cut(s)	333, 732, 882
SduI	GDGCHC	2 cut(s)	121, 739
SfaNI	GCATC	2 cut(s)	378, 881
SfcI	CTRYAG	1 cut(s)	939
Sfr303I	CCGCGG	1 cut(s)	1065
SgrBI	CCGCGG	1 cut(s)	1065
SinI	GGWCC	1 cut(s)	47
SmiMI	CAYNNNNRTG	1 cut(s)	920
SpeI	ACTAGT	2 cut(s)	497, 626
Sse9I	AATT	7 cut(s)	178, 209, 560, 571, 592, 851, 860
SseBI	AGGCCT	2 cut(s)	138, 190
SsiI	CCGC	5 cut(s)	681, 1059, 1062, 1064, 1078
SspI	AATATT	1 cut(s)	655
SspMI	CTAG	3 cut(s)	498, 548, 627
SstI	GAGCTC	1 cut(s)	121
StuI	AGGCCT	2 cut(s)	138, 190
StyD4I	CCNGG	3 cut(s)	331, 730, 880
StyI	CCWWGG	4 cut(s)	50, 103, 425, 506
TaaI	ACNGT	1 cut(s)	1166
TaiI	ACGT	3 cut(s)	273, 483, 1048
TaqI	TCGA	2 cut(s)	801, 909
TasI	AATT	7 cut(s)	178, 209, 560, 571, 592, 851, 860
TatI	WGTACW	2 cut(s)	500, 629
TauI	GCSGC	2 cut(s)	1064, 1081
TfiI	GAWTC	3 cut(s)	451, 847, 1007
Tru1I	TTAA	7 cut(s)	90, 167, 657, 749, 843, 1148, 1161
Tru9I	TTAA	7 cut(s)	90, 167, 657, 749, 843, 1148, 1161
TscAI	CASTG	1 cut(s)	774
TseI	GCWGC	5 cut(s)	539, 819, 822, 938, 1101
TspDTI	ATGAA	3 cut(s)	236, 363, 585
TspRI	CASTG	1 cut(s)	774
VpaK11BI	GGWCC	1 cut(s)	47
XapI	RAATTY	3 cut(s)	209, 571, 592
XceI	RCATGY	1 cut(s)	583
XspI	CTAG	3 cut(s)	498, 548, 627
ZrmI	AGTACT	2 cut(s)	502, 631

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.