Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0008586

Physical Location & Seq

Genomic Coordinates Forward (+)

43671575 .. 43672915

Gene Structure 1341 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003052

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGGGTAGATCCCCTTGTTGTGATGATCAGAGTGGTTTGAAGAAAGGTCCATGGACAACCGAAGAAGATCAGAAGTTGGTTGATTACATTAACACAAATGGCCATGGAAGCTGGAGAGCTCTCCCTAAGCGTGCAGGCCTCAACAGGTGTGGCAAGAGTTGCAGGTTAAGGTGGACTAATTACCTGAGGCCTGATATCAAGAGAGGTAAATTCTCCGAAGAAGAGGAAAGAGTTATCATCAACCTTCATGCAGTTGTTGGGAACAAGTGGTCTAAGATTGCTACTCATCTTCCGGGGCGAACTGATAATGAAATCAAGAACTATTGGAACACTCACCTGAGAAAGAAGCTGCTACAAATGGGACTTGATCCAAACACCCACAAGCCAAGGACAGACCTCAATCACCTTCTGAATCTTTCGCAGTTGCTTAGCACGGCGAACATTGGCAACATGATGACTAGTACTCCTTGGGACAATGCACTAAGGCTACAAGCAAGTGCTGCACAGCTAGCAAAAATGCAATTACTGCAAAATTTATACATGCAGGTTATAAATTCATCAGTTGCACCTGATATAGACAACAAGGCTAGTACTGGTCTTTTTGGTTCTCAGAATATTAACCTCTTTGGAGGGAACTTCAGCGGAGCAAACACTATGGTAAGAGGTCAAGAATGGAACCCTGATAGCTTCCCTGGAGCACCTAATGAGTTACACACTATTTCCAACTCACTGGAAGGGTTTGAAGGACTGAATAGCAATATTAACACCAACTTGATGAGCAGCTGCTATGATATCCACAGCTCTAAGAACCAATTTGCTGAATTAGTTTCAGCATCATCTCCTGGGAGTTCCACTACCAATAACCAAATCGAAAGCACGAGTACAGGTGATATTCCAGCTGCAGGTCAGTCATCACCCACCTCCATCTTTGAGGCTTGGGAGAAACTCATGGATGATGATACGAGTGAATCCTATTGGAAAGATATTCTGCAATCAATGTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

335

Amino Acids

37.05

Weight (kDa)

6.45

Isoelectric Point (pI)

48.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	15 - 62	1.7e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	18 - 77	8.5e-12	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	68 - 113	2.7e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	71 - 116	1.5e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008586)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02940 AT3G02940 AT3G02940 AT5G16770 AT5G16770 AT5G16770 AT5G16770
fragaria_vesca	FvH4_5g22510
malus_domestica	MD06G1037300.v1.1 MD16G1271400.v1.1
prunus_persica	Prupe.5G031700_v2.0.a1
pyrus_communis	pycom06g03080 pycom16g24100
rosa_chinensis	RchiOBHm_Chr7g0210281
rosa_laevigata	RLG00000003052
rosa_multiflora	Rmu_sc0003639.1_g000007 Rmu_sc0007188.1_g000001
rosa_roxburghii	Rroxscaffold_3G00248460
rosa_rugosa	Rorug07G0120400
rosa_samantha	Rh7AG253300 Rh7CG270200 Rh7DG260900
rosa_wichuraiana	Rw7G021590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	551
Acc36I	ACCTGC	3 cut(s)	153, 535, 893
AciI	CCGC	1 cut(s)	642
AclWI	GGATC	2 cut(s)	3, 362
AcoI	YGGCCR	1 cut(s)	100
AcsI	RAATTY	3 cut(s)	209, 532, 553
AcuI	CTGAAG	1 cut(s)	622
AfaI	GTAC	3 cut(s)	463, 592, 883
AfiI	CCNNNNNNNGG	1 cut(s)	902
AgsI	TTSAA	2 cut(s)	40, 743
AhlI	ACTAGT	1 cut(s)	458
AjnI	CCWGG	2 cut(s)	691, 841
AluBI	AGCT	8 cut(s)	111, 119, 349, 508, 687, 783, 801, 899
AluI	AGCT	8 cut(s)	111, 119, 349, 508, 687, 783, 801, 899
Alw21I	GWGCWC	2 cut(s)	121, 700
AlwI	GGATC	2 cut(s)	3, 362
AoxI	GGCC	3 cut(s)	100, 136, 188
ApeKI	GCWGC	5 cut(s)	349, 500, 780, 783, 899
ApoI	RAATTY	3 cut(s)	209, 532, 553
AspS9I	GGNCC	1 cut(s)	47
AsuC2I	CCSGG	1 cut(s)	294
AsuHPI	GGTGA	4 cut(s)	326, 395, 899, 906
AsuNHI	GCTAGC	1 cut(s)	508
AvaII	GGWCC	1 cut(s)	47
AxyI	CCTNAGG	1 cut(s)	185
BalI	TGGCCA	1 cut(s)	102
BanII	GRGCYC	1 cut(s)	121
BauI	CACGAG	1 cut(s)	877
Bbv12I	GWGCWC	2 cut(s)	121, 700
BbvI	GCAGC	5 cut(s)	336, 487, 770, 792, 886
BccI	CCATC	1 cut(s)	932
BceAI	ACGGC	1 cut(s)	450
BciT130I	CCWGG	2 cut(s)	693, 843
BclI	TGATCA	1 cut(s)	25
BcnI	CCSGG	1 cut(s)	294
BcuI	ACTAGT	1 cut(s)	458
BfaI	CTAG	3 cut(s)	459, 509, 588
BfmI	CTRYAG	1 cut(s)	900
BfuAI	ACCTGC	3 cut(s)	153, 535, 893
BisI	GCNGC	5 cut(s)	350, 501, 781, 784, 900
BlpI	GCTNAGC	1 cut(s)	428
BlsI	GCNGC	5 cut(s)	351, 502, 782, 785, 901
BmcAI	AGTACT	2 cut(s)	463, 592
Bme1390I	CCNGG	3 cut(s)	294, 693, 843
Bme18I	GGWCC	1 cut(s)	47
BmgT120I	GGNCC	1 cut(s)	47
BmiI	GGNNCC	1 cut(s)	677
BmrFI	CCNGG	3 cut(s)	294, 693, 843
BmsI	GCATC	1 cut(s)	842
BmtI	GCTAGC	1 cut(s)	512
BpmI	CTGGAG	2 cut(s)	133, 714
Bpu10I	CCTNAGC	1 cut(s)	126
Bpu1102I	GCTNAGC	1 cut(s)	428
BpuMI	CCSGG	1 cut(s)	294
BsaJI	CCNNGG	7 cut(s)	50, 103, 293, 386, 467, 691, 842
BsaXI	ACNNNNNCTCC	2 cut(s)	448, 478
Bsc4I	CCNNNNNNNGG	1 cut(s)	902
Bse1I	ACTGG	2 cut(s)	598, 735
Bse21I	CCTNAGG	1 cut(s)	185
BseBI	CCWGG	2 cut(s)	693, 843
BseDI	CCNNGG	7 cut(s)	50, 103, 293, 386, 467, 691, 842
BseGI	GGATG	1 cut(s)	958
BseLI	CCNNNNNNNGG	1 cut(s)	902
BseMII	CTCAG	3 cut(s)	176, 329, 623
BseNI	ACTGG	2 cut(s)	598, 735
BseXI	GCAGC	5 cut(s)	336, 487, 770, 792, 886
BsgI	GTGCAG	2 cut(s)	153, 486
BshFI	GGCC	3 cut(s)	102, 138, 190
BsiHKAI	GWGCWC	2 cut(s)	121, 700
BsiSI	CCGG	1 cut(s)	293
BslFI	GGGAC	2 cut(s)	375, 485
BslI	CCNNNNNNNGG	1 cut(s)	902
BsmFI	GGGAC	2 cut(s)	375, 485
BsnI	GGCC	3 cut(s)	102, 138, 190
Bsp1286I	GDGCHC	2 cut(s)	121, 700
Bsp143I	GATC	4 cut(s)	8, 25, 67, 367
Bsp1720I	GCTNAGC	1 cut(s)	428
Bsp19I	CCATGG	2 cut(s)	50, 103
BspACI	CCGC	1 cut(s)	642
BspANI	GGCC	3 cut(s)	102, 138, 190
BspCNI	CTCAG	3 cut(s)	177, 330, 622
BspLI	GGNNCC	1 cut(s)	677
BspMAI	CTGCAG	1 cut(s)	904
BspMI	ACCTGC	3 cut(s)	153, 535, 893
BspOI	GCTAGC	1 cut(s)	512
BspPI	GGATC	2 cut(s)	3, 362
BsrI	ACTGG	2 cut(s)	598, 735
BssECI	CCNNGG	7 cut(s)	50, 103, 293, 386, 467, 691, 842
BssMI	GATC	4 cut(s)	8, 25, 67, 367
BssSI	CACGAG	1 cut(s)	877
BssT1I	CCWWGG	4 cut(s)	50, 103, 386, 467
Bst2BI	CACGAG	1 cut(s)	877
Bst2UI	CCWGG	2 cut(s)	693, 843
Bst6I	CTCTTC	1 cut(s)	216
BstAPI	GCANNNNNTGC	3 cut(s)	159, 500, 526
BstC8I	GCNNGC	3 cut(s)	132, 136, 510
BstDEI	CTNAG	8 cut(s)	126, 185, 273, 338, 428, 482, 609, 804
BstDSI	CCRYGG	2 cut(s)	50, 103
BstF5I	GGATG	1 cut(s)	958
BstKTI	GATC	4 cut(s)	11, 28, 70, 370
BstMBI	GATC	4 cut(s)	8, 25, 67, 367
BstMWI	GCNNNNNNNGC	5 cut(s)	108, 159, 500, 509, 526
BstNI	CCWGG	2 cut(s)	693, 843
BstNSI	RCATGY	1 cut(s)	544
BstSCI	CCNGG	3 cut(s)	292, 691, 841
BstSFI	CTRYAG	1 cut(s)	900
BstV1I	GCAGC	5 cut(s)	336, 487, 770, 792, 886
BstX2I	RGATCY	1 cut(s)	8
BstXI	CCANNNNNNTGG	1 cut(s)	730
BstYI	RGATCY	1 cut(s)	8
Bsu36I	CCTNAGG	1 cut(s)	185
BsuRI	GGCC	3 cut(s)	102, 138, 190
BtgI	CCRYGG	2 cut(s)	50, 103
BtsCI	GGATG	1 cut(s)	958
BtsIMutI	CAGTG	1 cut(s)	728
BveI	ACCTGC	3 cut(s)	153, 535, 893
Cac8I	GCNNGC	3 cut(s)	132, 136, 510
Cfr13I	GGNCC	1 cut(s)	47
Csp6I	GTAC	3 cut(s)	462, 591, 882
CspCI	CAANNNNNGTGG	2 cut(s)	130, 165
CviAII	CATG	6 cut(s)	51, 104, 248, 451, 541, 949
CviQI	GTAC	3 cut(s)	462, 591, 882
DdeI	CTNAG	8 cut(s)	126, 185, 273, 338, 428, 482, 609, 804
DpnI	GATC	4 cut(s)	10, 27, 69, 369
DpnII	GATC	4 cut(s)	8, 25, 67, 367
EaeI	YGGCCR	1 cut(s)	100
Eam1104I	CTCTTC	1 cut(s)	216
EarI	CTCTTC	1 cut(s)	216
Ecl136II	GAGCTC	1 cut(s)	119
Eco130I	CCWWGG	4 cut(s)	50, 103, 386, 467
Eco147I	AGGCCT	2 cut(s)	138, 190
Eco24I	GRGCYC	1 cut(s)	121
Eco32I	GATATC	2 cut(s)	196, 793
Eco47I	GGWCC	1 cut(s)	47
Eco53kI	GAGCTC	1 cut(s)	119
Eco57I	CTGAAG	1 cut(s)	622
Eco81I	CCTNAGG	1 cut(s)	185
EcoICRI	GAGCTC	1 cut(s)	119
EcoRII	CCWGG	2 cut(s)	691, 841
EcoRV	GATATC	2 cut(s)	196, 793
EcoT14I	CCWWGG	4 cut(s)	50, 103, 386, 467
EcoT38I	GRGCYC	1 cut(s)	121
ErhI	CCWWGG	4 cut(s)	50, 103, 386, 467
FaeI	CATG	6 cut(s)	54, 107, 251, 454, 544, 952
FaqI	GGGAC	2 cut(s)	375, 485
FatI	CATG	6 cut(s)	50, 103, 247, 450, 540, 948
FbaI	TGATCA	1 cut(s)	25
Fnu4HI	GCNGC	5 cut(s)	350, 501, 781, 784, 900
FokI	GGATG	1 cut(s)	965
FriOI	GRGCYC	1 cut(s)	121
Fsp4HI	GCNGC	5 cut(s)	350, 501, 781, 784, 900
FspBI	CTAG	3 cut(s)	459, 509, 588
GluI	GCNGC	5 cut(s)	350, 501, 781, 784, 900
GsuI	CTGGAG	2 cut(s)	133, 714
HaeIII	GGCC	3 cut(s)	102, 138, 190
HapII	CCGG	1 cut(s)	293
Hin1II	CATG	6 cut(s)	54, 107, 251, 454, 544, 952
HinfI	GANTC	2 cut(s)	412, 968
HpaII	CCGG	1 cut(s)	293
HphI	GGTGA	4 cut(s)	326, 395, 899, 906
Hpy166II	GTNNAC	1 cut(s)	174
Hpy188I	TCNGA	5 cut(s)	30, 72, 217, 411, 612
Hpy188III	TCNNGA	3 cut(s)	199, 316, 668
Hpy8I	GTNNAC	1 cut(s)	174
HpyAV	CCTTC	4 cut(s)	254, 416, 728, 737
HpyF10VI	GCNNNNNNNGC	5 cut(s)	108, 159, 500, 509, 526
HpyF3I	CTNAG	8 cut(s)	126, 185, 273, 338, 428, 482, 609, 804
Hsp92II	CATG	6 cut(s)	54, 107, 251, 454, 544, 952
Ksp22I	TGATCA	1 cut(s)	25
Kzo9I	GATC	4 cut(s)	8, 25, 67, 367
LmnI	GCTCC	2 cut(s)	644, 695
Lsp1109I	GCAGC	5 cut(s)	336, 487, 770, 792, 886
LweI	GCATC	1 cut(s)	842
MaeI	CTAG	3 cut(s)	459, 509, 588
MaeIII	GTNAC	1 cut(s)	708
MalI	GATC	4 cut(s)	10, 27, 69, 369
MboI	GATC	4 cut(s)	8, 25, 67, 367
MboII	GAAGA	6 cut(s)	52, 74, 77, 230, 233, 281
MflI	RGATCY	1 cut(s)	8
MhlI	GDGCHC	2 cut(s)	121, 700
MlsI	TGGCCA	1 cut(s)	102
MluCI	AATT	7 cut(s)	178, 209, 521, 532, 553, 812, 821
MluNI	TGGCCA	1 cut(s)	102
MmeI	TCCRAC	1 cut(s)	747
Mox20I	TGGCCA	1 cut(s)	102
MscI	TGGCCA	1 cut(s)	102
MseI	TTAA	4 cut(s)	90, 167, 618, 762
Msp20I	TGGCCA	1 cut(s)	102
MspA1I	CMGCKG	3 cut(s)	642, 783, 899
MspI	CCGG	1 cut(s)	293
MspR9I	CCNGG	3 cut(s)	294, 693, 843
MvaI	CCWGG	2 cut(s)	693, 843
MwoI	GCNNNNNNNGC	5 cut(s)	108, 159, 500, 509, 526
NciI	CCSGG	1 cut(s)	294
NcoI	CCATGG	2 cut(s)	50, 103
NdeII	GATC	4 cut(s)	8, 25, 67, 367
NheI	GCTAGC	1 cut(s)	508
NlaIII	CATG	6 cut(s)	54, 107, 251, 454, 544, 952
NlaIV	GGNNCC	1 cut(s)	677
NspI	RCATGY	1 cut(s)	544
PceI	AGGCCT	2 cut(s)	138, 190
PfeI	GAWTC	2 cut(s)	412, 968
PkrI	GCNGC	5 cut(s)	351, 502, 782, 785, 901
PsiI	TTATAA	1 cut(s)	551
Psp124BI	GAGCTC	1 cut(s)	121
Psp6I	CCWGG	2 cut(s)	691, 841
PspGI	CCWGG	2 cut(s)	691, 841
PspN4I	GGNNCC	1 cut(s)	677
PspPI	GGNCC	1 cut(s)	47
PstI	CTGCAG	1 cut(s)	904
PsuI	RGATCY	1 cut(s)	8
PvuII	CAGCTG	2 cut(s)	783, 899
RsaI	GTAC	3 cut(s)	463, 592, 883
RsaNI	GTAC	3 cut(s)	462, 591, 882
SacI	GAGCTC	1 cut(s)	121
SaqAI	TTAA	4 cut(s)	90, 167, 618, 762
SatI	GCNGC	5 cut(s)	350, 501, 781, 784, 900
Sau3AI	GATC	4 cut(s)	8, 25, 67, 367
Sau96I	GGNCC	1 cut(s)	47
ScaI	AGTACT	2 cut(s)	463, 592
ScrFI	CCNGG	3 cut(s)	294, 693, 843
SduI	GDGCHC	2 cut(s)	121, 700
SfaNI	GCATC	1 cut(s)	842
SfcI	CTRYAG	1 cut(s)	900
SinI	GGWCC	1 cut(s)	47
SpeI	ACTAGT	1 cut(s)	458
Sse9I	AATT	7 cut(s)	178, 209, 521, 532, 553, 812, 821
SseBI	AGGCCT	2 cut(s)	138, 190
SsiI	CCGC	1 cut(s)	642
SspI	AATATT	2 cut(s)	616, 760
SspMI	CTAG	3 cut(s)	459, 509, 588
SstI	GAGCTC	1 cut(s)	121
StuI	AGGCCT	2 cut(s)	138, 190
StyD4I	CCNGG	3 cut(s)	292, 691, 841
StyI	CCWWGG	4 cut(s)	50, 103, 386, 467
TaqI	TCGA	1 cut(s)	870
TasI	AATT	7 cut(s)	178, 209, 521, 532, 553, 812, 821
TatI	WGTACW	3 cut(s)	461, 590, 881
TfiI	GAWTC	2 cut(s)	412, 968
Tru1I	TTAA	4 cut(s)	90, 167, 618, 762
Tru9I	TTAA	4 cut(s)	90, 167, 618, 762
TscAI	CASTG	1 cut(s)	735
TseI	GCWGC	5 cut(s)	349, 500, 780, 783, 899
TspDTI	ATGAA	3 cut(s)	236, 324, 546
TspRI	CASTG	1 cut(s)	735
VpaK11BI	GGWCC	1 cut(s)	47
XapI	RAATTY	3 cut(s)	209, 532, 553
XceI	RCATGY	1 cut(s)	544
XspI	CTAG	3 cut(s)	459, 509, 588
ZrmI	AGTACT	2 cut(s)	463, 592

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.