AT3G03090
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
700433 .. 704828
4396 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G03090.1

Sequence Viewer

Length: 1512 bp
ATGGGGTTTGATCCCGAGAACCAATCGATCTCTTCCGTTGGACAGGTTGTTGGTGATTCTTCTTCAGGTGGGATTACTGCTGAAAAGGAACCTTTGTTAAAGGAAAACCACAGCCCAGAGAACTACTCTGTTCTTGCAGCCATTCCTCCGTTTCTCTTTCCAGCTCTTGGAGCATTGCTTTTTGGTTATGAAATTGGTGCAACATCTTGTGCTATCATGTCTCTTAAGTCGCCTACTCTAAGTGGAATTTCATGGTACGACTTGTCTTCAGTGGATGTTGGTATAATTACCAGTGGCTCACTGTATGGTGCCTTAATTGGCTCCATTGTTGCATTTAGTGTTGCCGACATTATAGGAAGGAGAAAGGAGCTGATTTTGGCTGCATTCTTGTATCTTGTTGGAGCCATTGTGACTGTAGTAGCACCTGTCTTTTCCATACTGATAATTGGACGAGTTACGTATGGCATGGGGATTGGACTGACCATGCACGCGGCTCCAATGTACATTGCAGAGACTGCTCCAAGTCAAATACGTGGACGGATGATATCACTAAAGGAATTCTCCACTGTCCTTGGGATGGTTGGGGGTTATGGAATCGGTAGCCTTTGGATTACGGTTATTTCTGGTTGGCGTTACATGTACGCAACAATTCTCCCTTTTCCAGTTATTATGGGAACTGGAATGTGTTGGCTACCAGCATCTCCGAGGTGGCTTTTACTGCGCGCTCTCCAGGGACAAGGAAATGGGGAGAATCTTCAACAGGCTGCGATTAGATCTCTTTGTCGCCTTAGAGGGTCTGTCATAGCTGACTCAGCAGCTGAACAAGTAAACGAAATATTGGCTGAACTTTCCCTTGTGGGTGAAGACAAAGAAGCTACATTTGGTGAATTATTTCGAGGCAAATGCTTGAAAGCTCTCACTATAGCAGGAGGGTTAGTCTTGTTCCAACAGATAACTGGGCAACCAAGTGTACTATATTATGCACCATCAATACTACAGACTGCCGGCTTTTCTGCTGCAGCTGATGCAACTCGGATCTCAATTCTGCTCGGCCTATTGAAGTTGGTTATGACAGGAGTTTCTGTGATAGTTATCGACAGAGTTGGAAGGAGACCTTTACTTCTTTGTGGTGTTAGCGGAATGGTGATCTCATTGTTCCTCCTGGGATCCTACTACATGTTTTATAAAAATGTACCAGCTGTTGCTGTAGCTGCATTGCTACTGTATGTAGGCTGTTACCAGCTGTCCTTTGGCCCTATTGGTTGGCTGATGATTTCAGAGATATTTCCCTTAAAATTAAGAGGTAGAGGAATCAGTCTAGCAGTGCTTGTGAATTTTGGCGCAAACGCACTTGTGACATTCGCTTTCTCACCGCTAAAGGAGCTGTTAGGAGCTGGAATACTGTTCTGTGCATTTGGAGTGATATGTGTCGTGTCTCTCTTCTTCATATACTACATTGTGCCAGAGACAAAGGGTCTCACTCTTGAAGAAATTGAAGCCAAATGTCTCTAA

Protein Analysis

503

Amino Acids

53.54

Weight (kDa)

7.46

Isoelectric Point (pI)

42.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sugar_tr PF00083 53 - 500 2.9e-94 Sugar (and other) transporter
MFS_1 PF07690 71 - 451 2.2e-27 Major Facilitator Superfamily
MFS_1 PF07690 349 - 493 9.3e-07 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1185
AccB1I GGYRCC 1 cut(s) 308
AccB7I CCANNNNNTGG 1 cut(s) 167
AccII CGCG 2 cut(s) 491, 723
AciI CCGC 3 cut(s) 491, 1137, 1373
AclWI GGATC 4 cut(s) 5, 1043, 1161, 1174
AcsI RAATTY 3 cut(s) 246, 557, 1333
AcuI CTGAAG 2 cut(s) 48, 252
AfaI GTAC 5 cut(s) 257, 503, 641, 972, 1194
AfiI CCNNNNNNNGG 2 cut(s) 167, 577
AflII CTTAAG 1 cut(s) 224
AflIII ACRYGT 2 cut(s) 636, 1176
AgsI TTSAA 5 cut(s) 758, 910, 1060, 1487, 1496
AhdI GACNNNNNGTC 1 cut(s) 1473
AjnI CCWGG 2 cut(s) 729, 1161
AjuI GAANNNNNNNTTGG 2 cut(s) 864, 896
Alw26I GTCTC 6 cut(s) 225, 506, 1105, 1440, 1460, 1481
AlwI GGATC 4 cut(s) 5, 1043, 1161, 1174
AlwNI CAGNNNCTG 2 cut(s) 515, 818
Ama87I CYCGRG 1 cut(s) 14
AoxI GGCC 2 cut(s) 1051, 1252
ApeKI GCWGC 7 cut(s) 137, 380, 764, 815, 1016, 1019, 1211
ApoI RAATTY 3 cut(s) 246, 557, 1333
Asp700I GAANNNNTTC 1 cut(s) 891
AspLEI GCGC 3 cut(s) 723, 725, 1343
AspS9I GGNCC 1 cut(s) 1253
AsuHPI GGTGA 5 cut(s) 65, 872, 896, 1156, 1362
AvaI CYCGRG 1 cut(s) 14
BamHI GGATCC 1 cut(s) 1166
BanI GGYRCC 1 cut(s) 308
BbsI GAAGAC 2 cut(s) 258, 870
BbvI GCAGC 7 cut(s) 149, 367, 751, 827, 1003, 1031, 1198
BccI CCATC 2 cut(s) 571, 994
BcgI CGANNNNNNTGC 2 cut(s) 885, 919
BciT130I CCWGG 2 cut(s) 731, 1163
BcoDI GTCTC 6 cut(s) 225, 506, 1105, 1440, 1460, 1481
BfaI CTAG 1 cut(s) 1319
BfmI CTRYAG 5 cut(s) 414, 921, 995, 1017, 1206
BfrI CTTAAG 1 cut(s) 224
BglII AGATCT 1 cut(s) 773
BisI GCNGC 8 cut(s) 138, 381, 492, 765, 816, 1017, 1020, 1212
BlsI GCNGC 8 cut(s) 139, 382, 493, 766, 817, 1018, 1021, 1213
Bme1390I CCNGG 2 cut(s) 731, 1163
BmeRI GACNNNNNGTC 1 cut(s) 1473
BmeT110I CYCGRG 1 cut(s) 14
BmgT120I GGNCC 1 cut(s) 1253
BmiI GGNNCC 6 cut(s) 90, 310, 322, 403, 495, 1168
BmrFI CCNGG 2 cut(s) 731, 1163
BmrI ACTGGG 1 cut(s) 966
BmsI GCATC 2 cut(s) 707, 1015
BmuI ACTGGG 1 cut(s) 966
BpiI GAAGAC 2 cut(s) 258, 870
BplI GAGNNNNNCTC 2 cut(s) 110, 142
BpmI CTGGAG 1 cut(s) 713
Bsa29I ATCGAT 1 cut(s) 26
BsaAI YACGTR 2 cut(s) 459, 533
BsaBI GATNNNNATC 1 cut(s) 1091
BsaI GGTCTC 2 cut(s) 1105, 1481
BsaJI CCNNGG 4 cut(s) 571, 704, 730, 1162
BsaXI ACNNNNNCTCC 6 cut(s) 393, 423, 921, 951, 1068, 1098
Bsc4I CCNNNNNNNGG 2 cut(s) 167, 577
Bse118I RCCGGY 1 cut(s) 1004
Bse1I ACTGG 4 cut(s) 291, 662, 682, 961
Bse3DI GCAATG 3 cut(s) 173, 504, 1214
Bse8I GATNNNNATC 1 cut(s) 1091
BseBI CCWGG 2 cut(s) 731, 1163
BseCI ATCGAT 1 cut(s) 26
BseDI CCNNGG 4 cut(s) 571, 704, 730, 1162
BseGI GGATG 3 cut(s) 280, 546, 582
BseJI GATNNNNATC 1 cut(s) 1091
BseLI CCNNNNNNNGG 2 cut(s) 167, 577
BseMI GCAATG 3 cut(s) 173, 504, 1214
BseMII CTCAG 1 cut(s) 825
BseNI ACTGG 4 cut(s) 291, 662, 682, 961
BsePI GCGCGC 1 cut(s) 721
BseXI GCAGC 7 cut(s) 149, 367, 751, 827, 1003, 1031, 1198
Bsh1236I CGCG 2 cut(s) 491, 723
BshFI GGCC 2 cut(s) 1053, 1254
BshNI GGYRCC 1 cut(s) 308
BshVI ATCGAT 1 cut(s) 26
BsiHKCI CYCGRG 1 cut(s) 14
BsiSI CCGG 1 cut(s) 1005
BslFI GGGAC 1 cut(s) 747
BslI CCNNNNNNNGG 2 cut(s) 167, 577
BsmAI GTCTC 6 cut(s) 225, 506, 1105, 1440, 1460, 1481
BsmFI GGGAC 1 cut(s) 747
BsmI GAATGC 1 cut(s) 383
BsnI GGCC 2 cut(s) 1053, 1254
Bso31I GGTCTC 2 cut(s) 1105, 1481
BsoBI CYCGRG 1 cut(s) 14
Bsp1407I TGTACA 1 cut(s) 501
Bsp143I GATC 6 cut(s) 10, 27, 773, 1035, 1146, 1166
BspACI CCGC 3 cut(s) 491, 1137, 1373
BspANI GGCC 2 cut(s) 1053, 1254
BspCNI CTCAG 1 cut(s) 824
BspDI ATCGAT 1 cut(s) 26
BspFNI CGCG 2 cut(s) 491, 723
BspLI GGNNCC 6 cut(s) 90, 310, 322, 403, 495, 1168
BspMAI CTGCAG 1 cut(s) 1021
BspPI GGATC 4 cut(s) 5, 1043, 1161, 1174
BspT107I GGYRCC 1 cut(s) 308
BspTI CTTAAG 1 cut(s) 224
BspTNI GGTCTC 2 cut(s) 1105, 1481
BsrDI GCAATG 3 cut(s) 173, 504, 1214
BsrFI RCCGGY 1 cut(s) 1004
BsrGI TGTACA 1 cut(s) 501
BsrI ACTGG 4 cut(s) 291, 662, 682, 961
BssAI RCCGGY 1 cut(s) 1004
BssECI CCNNGG 4 cut(s) 571, 704, 730, 1162
BssHII GCGCGC 1 cut(s) 721
BssMI GATC 6 cut(s) 10, 27, 773, 1035, 1146, 1166
BssT1I CCWWGG 1 cut(s) 571
Bst2UI CCWGG 2 cut(s) 731, 1163
Bst4CI ACNGT 6 cut(s) 303, 415, 568, 616, 1224, 1404
Bst6I CTCTTC 2 cut(s) 37, 1445
BstAFI CTTAAG 1 cut(s) 224
BstAPI GCANNNNNTGC 2 cut(s) 515, 1025
BstAUI TGTACA 1 cut(s) 501
BstBAI YACGTR 2 cut(s) 459, 533
BstC8I GCNNGC 3 cut(s) 489, 723, 1006
BstDEI CTNAG 3 cut(s) 239, 788, 811
BstF5I GGATG 3 cut(s) 280, 546, 582
BstFNI CGCG 2 cut(s) 491, 723
BstHHI GCGC 3 cut(s) 723, 725, 1343
BstKTI GATC 6 cut(s) 13, 30, 776, 1038, 1149, 1169
BstMAI GTCTC 6 cut(s) 225, 506, 1105, 1440, 1460, 1481
BstMBI GATC 6 cut(s) 10, 27, 773, 1035, 1146, 1166
BstMWI GCNNNNNNNGC 7 cut(s) 170, 515, 718, 812, 1025, 1211, 1381
BstNI CCWGG 2 cut(s) 731, 1163
BstNSI RCATGY 2 cut(s) 640, 1180
BstSCI CCNGG 2 cut(s) 729, 1161
BstSFI CTRYAG 5 cut(s) 414, 921, 995, 1017, 1206
BstSNI TACGTA 1 cut(s) 459
BstUI CGCG 2 cut(s) 491, 723
BstV1I GCAGC 7 cut(s) 149, 367, 751, 827, 1003, 1031, 1198
BstV2I GAAGAC 2 cut(s) 258, 870
BstX2I RGATCY 3 cut(s) 773, 1035, 1166
BstYI RGATCY 3 cut(s) 773, 1035, 1166
Bsu15I ATCGAT 1 cut(s) 26
BsuRI GGCC 2 cut(s) 1053, 1254
BsuTUI ATCGAT 1 cut(s) 26
BtsCI GGATG 3 cut(s) 280, 546, 582
BtsI GCAGTG 1 cut(s) 1329
BtsIMutI CAGTG 5 cut(s) 276, 298, 299, 564, 1329
Cac8I GCNNGC 3 cut(s) 489, 723, 1006
CaiI CAGNNNCTG 2 cut(s) 515, 818
CfoI GCGC 3 cut(s) 723, 725, 1343
Cfr10I RCCGGY 1 cut(s) 1004
Cfr13I GGNCC 1 cut(s) 1253
ClaI ATCGAT 1 cut(s) 26
Csp6I GTAC 5 cut(s) 256, 502, 640, 971, 1193
CspCI CAANNNNNGTGG 2 cut(s) 553, 588
CviAII CATG 6 cut(s) 217, 252, 466, 484, 637, 1177
CviQI GTAC 5 cut(s) 256, 502, 640, 971, 1193
DdeI CTNAG 3 cut(s) 239, 788, 811
DpnI GATC 6 cut(s) 12, 29, 775, 1037, 1148, 1168
DpnII GATC 6 cut(s) 10, 27, 773, 1035, 1146, 1166
DriI GACNNNNNGTC 1 cut(s) 1473
Eam1104I CTCTTC 2 cut(s) 37, 1445
Eam1105I GACNNNNNGTC 1 cut(s) 1473
EarI CTCTTC 2 cut(s) 37, 1445
Eco105I TACGTA 1 cut(s) 459
Eco130I CCWWGG 1 cut(s) 571
Eco31I GGTCTC 2 cut(s) 1105, 1481
Eco32I GATATC 1 cut(s) 546
Eco57I CTGAAG 2 cut(s) 48, 252
Eco88I CYCGRG 1 cut(s) 14
EcoRI GAATTC 1 cut(s) 557
EcoRII CCWGG 2 cut(s) 729, 1161
EcoRV GATATC 1 cut(s) 546
EcoT14I CCWWGG 1 cut(s) 571
ErhI CCWWGG 1 cut(s) 571
FaeI CATG 6 cut(s) 220, 255, 469, 487, 640, 1180
FalI AAGNNNNNCTT 2 cut(s) 1099, 1131
FaqI GGGAC 1 cut(s) 747
FatI CATG 6 cut(s) 216, 251, 465, 483, 636, 1176
Fnu4HI GCNGC 8 cut(s) 138, 381, 492, 765, 816, 1017, 1020, 1212
FokI GGATG 3 cut(s) 287, 553, 589
Fsp4HI GCNGC 8 cut(s) 138, 381, 492, 765, 816, 1017, 1020, 1212
FspBI CTAG 1 cut(s) 1319
GlaI GCGC 3 cut(s) 722, 724, 1342
GluI GCNGC 8 cut(s) 138, 381, 492, 765, 816, 1017, 1020, 1212
GsuI CTGGAG 1 cut(s) 713
HaeIII GGCC 2 cut(s) 1053, 1254
HapII CCGG 1 cut(s) 1005
HhaI GCGC 3 cut(s) 723, 725, 1343
Hin1II CATG 6 cut(s) 220, 255, 469, 487, 640, 1180
Hin6I GCGC 3 cut(s) 721, 723, 1341
HinP1I GCGC 3 cut(s) 721, 723, 1341
HinfI GANTC 5 cut(s) 56, 594, 751, 809, 1311
HpaII CCGG 1 cut(s) 1005
HphI GGTGA 5 cut(s) 65, 872, 896, 1156, 1362
Hpy166II GTNNAC 3 cut(s) 536, 829, 971
Hpy188I TCNGA 3 cut(s) 705, 1035, 1279
Hpy188III TCNNGA 2 cut(s) 14, 1484
Hpy8I GTNNAC 3 cut(s) 536, 829, 971
HpyAV CCTTC 2 cut(s) 351, 1101
HpyCH4III ACNGT 6 cut(s) 303, 415, 568, 616, 1224, 1404
HpyCH4IV ACGT 2 cut(s) 458, 532
HpyF10VI GCNNNNNNNGC 7 cut(s) 170, 515, 718, 812, 1025, 1211, 1381
HpyF3I CTNAG 3 cut(s) 239, 788, 811
HpySE526I ACGT 2 cut(s) 458, 532
Hsp92II CATG 6 cut(s) 220, 255, 469, 487, 640, 1180
HspAI GCGC 3 cut(s) 721, 723, 1341
KroI GCCGGC 1 cut(s) 1004
KroNI GCCGGC 1 cut(s) 1006
Kzo9I GATC 6 cut(s) 10, 27, 773, 1035, 1146, 1166
LmnI GCTCC 8 cut(s) 170, 326, 367, 401, 499, 523, 1381, 1391
Lsp1109I GCAGC 7 cut(s) 149, 367, 751, 827, 1003, 1031, 1198
LweI GCATC 2 cut(s) 707, 1015
MaeI CTAG 1 cut(s) 1319
MaeII ACGT 2 cut(s) 458, 532
MaeIII GTNAC 5 cut(s) 409, 454, 632, 1235, 1354
MalI GATC 6 cut(s) 12, 29, 775, 1037, 1148, 1168
MboI GATC 6 cut(s) 10, 27, 773, 1035, 1146, 1166
MboII GAAGA 9 cut(s) 24, 51, 54, 258, 746, 875, 1432, 1435, 1499
MflI RGATCY 3 cut(s) 773, 1035, 1166
MlyI GAGTC 1 cut(s) 803
MmeI TCCRAC 4 cut(s) 19, 379, 970, 1084
MnlI CCTC 8 cut(s) 156, 699, 785, 890, 923, 1169, 1295, 1301
MroNI GCCGGC 1 cut(s) 1004
MroXI GAANNNNTTC 1 cut(s) 891
MseI TTAA 5 cut(s) 98, 225, 314, 1292, 1298
MspA1I CMGCKG 4 cut(s) 818, 1022, 1199, 1243
MspCI CTTAAG 1 cut(s) 224
MspI CCGG 1 cut(s) 1005
MspR9I CCNGG 2 cut(s) 731, 1163
Mva1269I GAATGC 1 cut(s) 383
MvaI CCWGG 2 cut(s) 731, 1163
MvnI CGCG 2 cut(s) 491, 723
MwoI GCNNNNNNNGC 7 cut(s) 170, 515, 718, 812, 1025, 1211, 1381
NaeI GCCGGC 1 cut(s) 1006
NdeII GATC 6 cut(s) 10, 27, 773, 1035, 1146, 1166
NgoMIV GCCGGC 1 cut(s) 1004
NlaIII CATG 6 cut(s) 220, 255, 469, 487, 640, 1180
NlaIV GGNNCC 6 cut(s) 90, 310, 322, 403, 495, 1168
NmeAIII GCCGAG 1 cut(s) 1029
NmuCI GTSAC 2 cut(s) 409, 1354
NspI RCATGY 2 cut(s) 640, 1180
PauI GCGCGC 1 cut(s) 721
PciI ACATGT 2 cut(s) 636, 1176
PctI GAATGC 1 cut(s) 383
PdiI GCCGGC 1 cut(s) 1006
PdmI GAANNNNTTC 1 cut(s) 891
PfeI GAWTC 4 cut(s) 56, 594, 751, 1311
PflMI CCANNNNNTGG 1 cut(s) 167
PkrI GCNGC 8 cut(s) 139, 382, 493, 766, 817, 1018, 1021, 1213
PleI GAGTC 1 cut(s) 803
PpsI GAGTC 1 cut(s) 803
Ppu21I YACGTR 2 cut(s) 459, 533
PscI ACATGT 2 cut(s) 636, 1176
PsiI TTATAA 1 cut(s) 1185
Psp6I CCWGG 2 cut(s) 729, 1161
PspGI CCWGG 2 cut(s) 729, 1161
PspN4I GGNNCC 6 cut(s) 90, 310, 322, 403, 495, 1168
PspPI GGNCC 1 cut(s) 1253
PstI CTGCAG 1 cut(s) 1021
PstNI CAGNNNCTG 2 cut(s) 515, 818
PsuI RGATCY 3 cut(s) 773, 1035, 1166
PteI GCGCGC 1 cut(s) 721
PvuII CAGCTG 4 cut(s) 818, 1022, 1199, 1243
RsaI GTAC 5 cut(s) 257, 503, 641, 972, 1194
RsaNI GTAC 5 cut(s) 256, 502, 640, 971, 1193
SaqAI TTAA 5 cut(s) 98, 225, 314, 1292, 1298
SatI GCNGC 8 cut(s) 138, 381, 492, 765, 816, 1017, 1020, 1212
Sau3AI GATC 6 cut(s) 10, 27, 773, 1035, 1146, 1166
Sau96I GGNCC 1 cut(s) 1253
SchI GAGTC 1 cut(s) 803
ScrFI CCNGG 2 cut(s) 731, 1163
SfaNI GCATC 2 cut(s) 707, 1015
SfcI CTRYAG 5 cut(s) 414, 921, 995, 1017, 1206
SmlI CTYRAG 1 cut(s) 224
SmoI CTYRAG 1 cut(s) 224
SnaBI TACGTA 1 cut(s) 459
SsiI CCGC 3 cut(s) 491, 1137, 1373
SspI AATATT 1 cut(s) 837
SspMI CTAG 1 cut(s) 1319
StyD4I CCNGG 2 cut(s) 729, 1161
StyI CCWWGG 1 cut(s) 571
TaaI ACNGT 6 cut(s) 303, 415, 568, 616, 1224, 1404
TaiI ACGT 2 cut(s) 461, 535
TaqI TCGA 3 cut(s) 26, 895, 1095
TatI WGTACW 2 cut(s) 501, 970
TauI GCSGC 1 cut(s) 494
TfiI GAWTC 4 cut(s) 56, 594, 751, 1311
Tru1I TTAA 5 cut(s) 98, 225, 314, 1292, 1298
Tru9I TTAA 5 cut(s) 98, 225, 314, 1292, 1298
TscAI CASTG 5 cut(s) 276, 298, 306, 571, 1329
TseFI GTSAC 2 cut(s) 409, 1354
TseI GCWGC 7 cut(s) 137, 380, 764, 815, 1016, 1019, 1211
Tsp45I GTSAC 2 cut(s) 409, 1354
TspDTI ATGAA 3 cut(s) 204, 240, 1435
TspGWI ACGGA 3 cut(s) 25, 138, 553
TspRI CASTG 5 cut(s) 276, 298, 306, 571, 1329
Van91I CCANNNNNTGG 1 cut(s) 167
Vha464I CTTAAG 1 cut(s) 224
XapI RAATTY 3 cut(s) 246, 557, 1333
XceI RCATGY 2 cut(s) 640, 1180
XcmI CCANNNNNNNNNTGG 2 cut(s) 953, 1247
XmnI GAANNNNTTC 1 cut(s) 891
XspI CTAG 1 cut(s) 1319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.