Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0004614

Physical Location & Seq

Genomic Coordinates Reverse (-)

479046 .. 483670

Gene Structure 4625 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00276990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGGTGATTGGGCGTTTTGTATTTGGTATAGGAATTGGACTGGCAATGCATGCTGCTCCAATGTATATTGCTGAGACAGCTCCAACTCAGATACGAGGTCGACTAATATCACTTAAAGAATTCTTTATAGTACTTGGAATGGTTGCGGGTTATGGAATTGGTAGTCTTTTAGTCAGCACAGTTGGTGGTTGGCGGTATATGTATGGAGCTAGTGTCCCTCTGGCAGTAATTATGGGAATTGGAATGTGGTGGCTACCCGAGTCACCTAGATGGATCCTTCTACGTGCCATCCAAGGAAAAGGAAATATGACTGATATGAAAGATACTGCAATCAGTTGCTTGTTCCGGCTTAGGGGTACGATTATTGGTGATTCAGCTCCTGCACTAGTAGATGAGATGCTTGATGAGCTTTCTTATGTTGGTGAAGAGAAAAAAGCTTCATTCTTAGAGTTGTTTCGTGGAAAATGCAAAAAAGCCCTCGTGATTGGTGCAGGATTAGTGTTGTTCCAACAGATCACAGGGCAACCAAGTGTGCTGTATTATGCTGCATCAATTTTTCAGACTGCAGGATTCTCCGCAGCATCTGATGCAACAGAGGTCTCAATTATACTTGGGTTATTCAAGTTGGTAATGACTGGACTAGCTGTGCTTGTTGTTGATAGACTTGGGAGGAGACCCCTACTACTTACAGGTGTTACTGGGATGGTCATCTCTTTATTCCTTTTGGGGTCATATTACCTTTTCTTTGATGATACACCAGCCATAGCTGTAATTGCACTGCTGGCATATGTTGGGTGTTATCAGTTCTCCTTTGGTCCCATTGGTTGGCTCATGATATCAGAAATTTTTCCCTTGCGATTAAGAGGGCGCGGACTTAGCTTAGCAGTGCTTGTGAACTTTGCTGCAAATGCACTGGTGACATTTTCATTTTCCCCTCTAGAGGCATGGCTGGGAGCTGGGATAGTGTTTTATGTATTTGGAGTAATAGCTGTGGTATCTCTTGTTTTCATTTTCTTCATTGTCCCAGAGACAAAGGGGCTTACCCTCGAGGAAATTGAGATCAAATGCCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005351 GO:0005353 GO:0005355 GO:0005402 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0007275 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009605 GO:0009607 GO:0009624 GO:0009705 GO:0009791 GO:0009845 GO:0009909 GO:0009911 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0015755 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0031090 GO:0032501 GO:0032502 GO:0034219 GO:0034220 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046323 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051094 GO:0051119 GO:0051179 GO:0051234 GO:0051239 GO:0051240 GO:0051704 GO:0051707 GO:0055085 GO:0065007 GO:0071702 GO:0090351 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1902600 GO:1904659 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

357

Amino Acids

38.7

Weight (kDa)

8.27

Isoelectric Point (pI)

31.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFS_1	PF07690	1 - 305	3.7e-23	Major Facilitator Superfamily
Sugar_tr	PF00083	2 - 353	3.7e-84	Sugar (and other) transporter
MFS_1	PF07690	205 - 345	5.8e-08	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004614)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03090 AT5G17010 AT5G17010 AT5G17010 AT5G17010
fragaria_vesca	FvH4_7g33891 FvH4_7g33900
malus_domestica	MD01G1235500.v1.1 MD07G1308300.v1.1
prunus_persica	Prupe.2G325500_v2.0.a1
pyrus_communis	pycom01g24360 pycom07g28050
rosa_chinensis	RchiOBHm_Chr1g0384101 RchiOBHm_Chr1g0384111
rosa_laevigata	RLG00000026071 RLG00000026072
rosa_multiflora	Rmu_sc0031875.1_g000001
rosa_roxburghii	Rroxscaffold_4G00276980 Rroxscaffold_4G00276990
rosa_rugosa	Rorug01G0444800 Rorug01G0444900
rosa_samantha	Rh1AG470300 Rh1AG470400 Rh1BG427700 Rh1BG427800 Rh1CG440400 Rh1CG440500 Rh1DG460700 Rh1DG460800
rosa_wichuraiana	Rw1G040230 Rw1G040240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	1046
AccB7I	CCANNNNNTGG	1 cut(s)	825
AccI	GTMKAC	1 cut(s)	100
AccII	CGCG	1 cut(s)	870
AciI	CCGC	4 cut(s)	146, 193, 576, 870
AclWI	GGATC	2 cut(s)	268, 281
AcsI	RAATTY	2 cut(s)	119, 843
AfaI	GTAC	2 cut(s)	132, 358
AfiI	CCNNNNNNNGG	3 cut(s)	352, 825, 940
AgsI	TTSAA	1 cut(s)	622
AhlI	ACTAGT	1 cut(s)	385
Alw26I	GTCTC	4 cut(s)	68, 604, 667, 1022
AlwI	GGATC	2 cut(s)	268, 281
AlwNI	CAGNNNCTG	2 cut(s)	380, 584
Ama87I	CYCGRG	2 cut(s)	257, 1046
ApeKI	GCWGC	4 cut(s)	53, 545, 578, 902
ApoI	RAATTY	2 cut(s)	119, 843
Asp700I	GAANNNNTTC	1 cut(s)	846
AspLEI	GCGC	1 cut(s)	870
AspS9I	GGNCC	1 cut(s)	815
AsuHPI	GGTGA	5 cut(s)	16, 255, 380, 434, 928
AvaI	CYCGRG	2 cut(s)	257, 1046
AvaII	GGWCC	1 cut(s)	815
BamHI	GGATCC	1 cut(s)	273
BauI	CACGAG	1 cut(s)	479
BbvI	GCAGC	4 cut(s)	40, 532, 590, 889
BccI	CCATC	3 cut(s)	264, 296, 697
BcoDI	GTCTC	4 cut(s)	68, 604, 667, 1022
BcuI	ACTAGT	1 cut(s)	385
BfaI	CTAG	5 cut(s)	210, 267, 386, 641, 938
BfmI	CTRYAG	1 cut(s)	564
BisI	GCNGC	4 cut(s)	54, 546, 579, 903
BlpI	GCTNAGC	1 cut(s)	880
BlsI	GCNGC	4 cut(s)	55, 547, 580, 904
BmcAI	AGTACT	1 cut(s)	132
Bme18I	GGWCC	1 cut(s)	815
BmeT110I	CYCGRG	2 cut(s)	257, 1046
BmgT120I	GGNCC	1 cut(s)	815
BmiI	GGNNCC	2 cut(s)	275, 817
BmrI	ACTGGG	1 cut(s)	708
BmsI	GCATC	4 cut(s)	387, 557, 577, 590
BmuI	ACTGGG	1 cut(s)	708
Bpu10I	CCTNAGC	1 cut(s)	350
Bpu1102I	GCTNAGC	1 cut(s)	880
BsaAI	YACGTR	1 cut(s)	284
BsaBI	GATNNNNATC	1 cut(s)	707
BsaI	GGTCTC	2 cut(s)	604, 667
BsaJI	CCNNGG	1 cut(s)	292
BsaXI	ACNNNNNCTCC	2 cut(s)	198, 228
Bsc4I	CCNNNNNNNGG	3 cut(s)	352, 825, 940
Bse1I	ACTGG	4 cut(s)	45, 640, 703, 918
Bse3DI	GCAATG	1 cut(s)	51
Bse8I	GATNNNNATC	1 cut(s)	707
BseDI	CCNNGG	1 cut(s)	292
BseGI	GGATG	2 cut(s)	288, 708
BseJI	GATNNNNATC	1 cut(s)	707
BseLI	CCNNNNNNNGG	3 cut(s)	352, 825, 940
BseMI	GCAATG	1 cut(s)	51
BseMII	CTCAG	2 cut(s)	63, 101
BseNI	ACTGG	4 cut(s)	45, 640, 703, 918
BseRI	GAGGAG	1 cut(s)	685
BseXI	GCAGC	4 cut(s)	40, 532, 590, 889
BseYI	CCCAGC	2 cut(s)	949, 956
BsgI	GTGCAG	2 cut(s)	366, 510
Bsh1236I	CGCG	1 cut(s)	870
BsiHKCI	CYCGRG	2 cut(s)	257, 1046
BsiSI	CCGG	1 cut(s)	346
BslFI	GGGAC	3 cut(s)	200, 801, 1007
BslI	CCNNNNNNNGG	3 cut(s)	352, 825, 940
BsmAI	GTCTC	4 cut(s)	68, 604, 667, 1022
BsmFI	GGGAC	3 cut(s)	200, 801, 1007
Bso31I	GGTCTC	2 cut(s)	604, 667
BsoBI	CYCGRG	2 cut(s)	257, 1046
Bsp143I	GATC	3 cut(s)	273, 513, 1059
Bsp1720I	GCTNAGC	1 cut(s)	880
BspACI	CCGC	4 cut(s)	146, 193, 576, 870
BspCNI	CTCAG	2 cut(s)	64, 100
BspFNI	CGCG	1 cut(s)	870
BspHI	TCATGA	1 cut(s)	831
BspLI	GGNNCC	2 cut(s)	275, 817
BspMAI	CTGCAG	1 cut(s)	568
BspPI	GGATC	2 cut(s)	268, 281
BspTNI	GGTCTC	2 cut(s)	604, 667
BsrDI	GCAATG	1 cut(s)	51
BsrI	ACTGG	4 cut(s)	45, 640, 703, 918
BssECI	CCNNGG	1 cut(s)	292
BssMI	GATC	3 cut(s)	273, 513, 1059
BssSI	CACGAG	1 cut(s)	479
BssT1I	CCWWGG	1 cut(s)	292
Bst2BI	CACGAG	1 cut(s)	479
Bst4CI	ACNGT	1 cut(s)	181
Bst6I	CTCTTC	1 cut(s)	420
BstAPI	GCANNNNNTGC	2 cut(s)	50, 587
BstBAI	YACGTR	1 cut(s)	284
BstC8I	GCNNGC	2 cut(s)	51, 783
BstDEI	CTNAG	6 cut(s)	72, 87, 350, 445, 875, 880
BstF5I	GGATG	2 cut(s)	288, 708
BstFNI	CGCG	1 cut(s)	870
BstHHI	GCGC	1 cut(s)	870
BstKTI	GATC	3 cut(s)	276, 516, 1062
BstMAI	GTCTC	4 cut(s)	68, 604, 667, 1022
BstMBI	GATC	3 cut(s)	273, 513, 1059
BstMWI	GCNNNNNNNGC	8 cut(s)	50, 77, 406, 587, 773, 782, 876, 908
BstNSI	RCATGY	1 cut(s)	53
BstSFI	CTRYAG	1 cut(s)	564
BstUI	CGCG	1 cut(s)	870
BstV1I	GCAGC	4 cut(s)	40, 532, 590, 889
BstX2I	RGATCY	1 cut(s)	273
BstYI	RGATCY	1 cut(s)	273
BtsCI	GGATG	2 cut(s)	288, 708
BtsI	GCAGTG	2 cut(s)	776, 891
BtsIMutI	CAGTG	3 cut(s)	776, 891, 911
Cac8I	GCNNGC	2 cut(s)	51, 783
CaiI	CAGNNNCTG	2 cut(s)	380, 584
CciI	TCATGA	1 cut(s)	831
CfoI	GCGC	1 cut(s)	870
Cfr13I	GGNCC	1 cut(s)	815
Csp6I	GTAC	2 cut(s)	131, 357
CviAII	CATG	3 cut(s)	50, 832, 945
CviQI	GTAC	2 cut(s)	131, 357
DdeI	CTNAG	6 cut(s)	72, 87, 350, 445, 875, 880
DpnI	GATC	3 cut(s)	275, 515, 1061
DpnII	GATC	3 cut(s)	273, 513, 1059
Eam1104I	CTCTTC	1 cut(s)	420
EarI	CTCTTC	1 cut(s)	420
Eco130I	CCWWGG	1 cut(s)	292
Eco31I	GGTCTC	2 cut(s)	604, 667
Eco32I	GATATC	1 cut(s)	837
Eco47I	GGWCC	1 cut(s)	815
Eco88I	CYCGRG	2 cut(s)	257, 1046
EcoRI	GAATTC	1 cut(s)	119
EcoRV	GATATC	1 cut(s)	837
EcoT14I	CCWWGG	1 cut(s)	292
EcoT22I	ATGCAT	1 cut(s)	51
ErhI	CCWWGG	1 cut(s)	292
FaeI	CATG	3 cut(s)	53, 835, 948
FaqI	GGGAC	3 cut(s)	200, 801, 1007
FatI	CATG	3 cut(s)	49, 831, 944
FauI	CCCGC	1 cut(s)	139
FauNDI	CATATG	1 cut(s)	787
FblI	GTMKAC	1 cut(s)	100
Fnu4HI	GCNGC	4 cut(s)	54, 546, 579, 903
FokI	GGATG	2 cut(s)	275, 715
Fsp4HI	GCNGC	4 cut(s)	54, 546, 579, 903
FspBI	CTAG	5 cut(s)	210, 267, 386, 641, 938
GlaI	GCGC	1 cut(s)	869
GluI	GCNGC	4 cut(s)	54, 546, 579, 903
GsaI	CCCAGC	2 cut(s)	953, 960
HapII	CCGG	1 cut(s)	346
HhaI	GCGC	1 cut(s)	870
Hin1II	CATG	3 cut(s)	53, 835, 948
Hin6I	GCGC	1 cut(s)	868
HinP1I	GCGC	1 cut(s)	868
HincII	GTYRAC	1 cut(s)	101
HindII	GTYRAC	1 cut(s)	101
HindIII	AAGCTT	1 cut(s)	435
HinfI	GANTC	3 cut(s)	260, 371, 570
HpaII	CCGG	1 cut(s)	346
HphI	GGTGA	5 cut(s)	16, 255, 380, 434, 928
Hpy166II	GTNNAC	2 cut(s)	101, 895
Hpy188I	TCNGA	4 cut(s)	90, 561, 586, 841
Hpy188III	TCNNGA	3 cut(s)	481, 832, 938
Hpy8I	GTNNAC	2 cut(s)	101, 895
HpyAV	CCTTC	1 cut(s)	287
HpyCH4III	ACNGT	1 cut(s)	181
HpyCH4IV	ACGT	1 cut(s)	283
HpyF10VI	GCNNNNNNNGC	8 cut(s)	50, 77, 406, 587, 773, 782, 876, 908
HpyF3I	CTNAG	6 cut(s)	72, 87, 350, 445, 875, 880
HpySE526I	ACGT	1 cut(s)	283
Hsp92II	CATG	3 cut(s)	53, 835, 948
HspAI	GCGC	1 cut(s)	868
Kzo9I	GATC	3 cut(s)	273, 513, 1059
LmnI	GCTCC	5 cut(s)	61, 85, 206, 382, 953
Lsp1109I	GCAGC	4 cut(s)	40, 532, 590, 889
LweI	GCATC	4 cut(s)	387, 557, 577, 590
MaeI	CTAG	5 cut(s)	210, 267, 386, 641, 938
MaeII	ACGT	1 cut(s)	283
MaeIII	GTNAC	3 cut(s)	261, 694, 916
MalI	GATC	3 cut(s)	275, 515, 1061
MboI	GATC	3 cut(s)	273, 513, 1059
MboII	GAAGA	2 cut(s)	437, 1006
MflI	RGATCY	1 cut(s)	273
MlyI	GAGTC	1 cut(s)	269
MmeI	TCCRAC	2 cut(s)	107, 532
Mph1103I	ATGCAT	1 cut(s)	51
MroXI	GAANNNNTTC	1 cut(s)	846
MseI	TTAA	2 cut(s)	114, 860
MslI	CAYNNNNRTG	1 cut(s)	268
MspI	CCGG	1 cut(s)	346
MvnI	CGCG	1 cut(s)	870
MwoI	GCNNNNNNNGC	8 cut(s)	50, 77, 406, 587, 773, 782, 876, 908
NdeI	CATATG	1 cut(s)	787
NdeII	GATC	3 cut(s)	273, 513, 1059
NlaIII	CATG	3 cut(s)	53, 835, 948
NlaIV	GGNNCC	2 cut(s)	275, 817
NmuCI	GTSAC	2 cut(s)	261, 916
NsiI	ATGCAT	1 cut(s)	51
NspI	RCATGY	1 cut(s)	53
PaeI	GCATGC	1 cut(s)	53
PaeR7I	CTCGAG	1 cut(s)	1046
PagI	TCATGA	1 cut(s)	831
PdmI	GAANNNNTTC	1 cut(s)	846
PfeI	GAWTC	2 cut(s)	371, 570
PflMI	CCANNNNNTGG	1 cut(s)	825
PkrI	GCNGC	4 cut(s)	55, 547, 580, 904
PleI	GAGTC	1 cut(s)	268
PpsI	GAGTC	1 cut(s)	268
Ppu21I	YACGTR	1 cut(s)	284
PspFI	CCCAGC	2 cut(s)	949, 956
PspN4I	GGNNCC	2 cut(s)	275, 817
PspPI	GGNCC	1 cut(s)	815
PspXI	VCTCGAGB	1 cut(s)	1046
PstI	CTGCAG	1 cut(s)	568
PstNI	CAGNNNCTG	2 cut(s)	380, 584
PsuI	RGATCY	1 cut(s)	273
RsaI	GTAC	2 cut(s)	132, 358
RsaNI	GTAC	2 cut(s)	131, 357
RseI	CAYNNNNRTG	1 cut(s)	268
SalI	GTCGAC	1 cut(s)	99
SaqAI	TTAA	2 cut(s)	114, 860
SatI	GCNGC	4 cut(s)	54, 546, 579, 903
Sau3AI	GATC	3 cut(s)	273, 513, 1059
Sau96I	GGNCC	1 cut(s)	815
ScaI	AGTACT	1 cut(s)	132
SchI	GAGTC	1 cut(s)	269
SfaNI	GCATC	4 cut(s)	387, 557, 577, 590
SfcI	CTRYAG	1 cut(s)	564
Sfr274I	CTCGAG	1 cut(s)	1046
SinI	GGWCC	1 cut(s)	815
SlaI	CTCGAG	1 cut(s)	1046
SmiMI	CAYNNNNRTG	1 cut(s)	268
SmlI	CTYRAG	1 cut(s)	1046
SmoI	CTYRAG	1 cut(s)	1046
SpeI	ACTAGT	1 cut(s)	385
SphI	GCATGC	1 cut(s)	53
SsiI	CCGC	4 cut(s)	146, 193, 576, 870
SspMI	CTAG	5 cut(s)	210, 267, 386, 641, 938
StyI	CCWWGG	1 cut(s)	292
TaaI	ACNGT	1 cut(s)	181
TaiI	ACGT	1 cut(s)	286
TaqI	TCGA	2 cut(s)	100, 1047
TatI	WGTACW	1 cut(s)	130
TfiI	GAWTC	2 cut(s)	371, 570
Tru1I	TTAA	2 cut(s)	114, 860
Tru9I	TTAA	2 cut(s)	114, 860
TscAI	CASTG	3 cut(s)	783, 891, 918
TseFI	GTSAC	2 cut(s)	261, 916
TseI	GCWGC	4 cut(s)	53, 545, 578, 902
Tsp45I	GTSAC	2 cut(s)	261, 916
TspDTI	ATGAA	5 cut(s)	332, 429, 915, 997, 1006
TspRI	CASTG	3 cut(s)	783, 891, 918
Van91I	CCANNNNNTGG	1 cut(s)	825
VpaK11BI	GGWCC	1 cut(s)	815
XapI	RAATTY	2 cut(s)	119, 843
XbaI	TCTAGA	1 cut(s)	937
XceI	RCATGY	1 cut(s)	53
XhoI	CTCGAG	1 cut(s)	1046
XmiI	GTMKAC	1 cut(s)	100
XmnI	GAANNNNTTC	1 cut(s)	846
XspI	CTAG	5 cut(s)	210, 267, 386, 641, 938
ZrmI	AGTACT	1 cut(s)	132
Zsp2I	ATGCAT	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.