Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0004614

Physical Location & Seq

Genomic Coordinates Forward (+)

54135691 .. 54146703

Gene Structure 11013 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0444800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1524 bp

ATGGAAACCTGGCTCCTCATCCTCACCACCCTCCTCCTCTCTCTCCTCCTCAAACCCATCCTCTCCCTCCTCCTCACCACCAACAAGCTCCCGCCGGGCCCCATCTCCTTCCCCATAATCAGCAGCTTCCTCTGGCTCCGCAAATCCTTCACGGAGCTCGAGCCCATCATCCGCAACCTCCACGCCCGCTACGGCCCAATCATCACCCTCCGCATCGGCTCCCGCCCCGCCGTCTTCATCTCCAACCGCTCCCTCGCCCACCAGGCCCTAATCCAAAACGGCGCCGTCTTCGCCGACCGCCCCCCGGCTTTAGCCACCAGCAGAATCATCAGCAGCAACCAGCACAACATCAGCTCCGCCGTCTGCGGCCCCACGTGGCGGCTCCTCCGCCGCAACCTCACCTCCGAAATCCTCCACCCTTCCCGCGTCAAATCCTACTCCGGGGCCCGCAAGTGGGTCCTCGACATCCTCGCGAACCGTCTAACGGAATCCCAATCCCAATCCAACGGAGGGGGAGGAGTCAAAGTCGTTGACCATTTCCAGTACGCCATGTTCTGCTTGCTGGTTCTCATGTGTTTTGGAGACAAACTCGACGAGAACCAGATCAATAAAATCGAAGAGGTCCAGCGGAGGATGCTCCTCAGCTTCAGCCGGTTCAACATCCTCAATTTCTGGCCTTCATTGACGAAAATAGTCCTCAAGAATCGCTGGCAGGAGTTCTTTCGAATCCGAAAAGCCCAAGAAGATGTCCTGCTTCCTCTGATTCGAGCCCGCAAGGATGCCAATGTCAACAAGAGCGATGACTATGTACTGTCTTACGTCGACACTCTCTGGGACCTCGAGCTTCCCGACGAGAAGAGGAAGCCGACGGAAGACGAGATCATTAGCCTCTGTTCGGAGTTTCTCAATGCCGGAACCGATACTACTTCCACCGCGCTGCAGTGGATCATGGCTAATATTGTGAAGTATCCGTCTGTGCAGGAGAGGCTGCTTGCGGAGATTAAAGGAGTTGTGGAGGAAACAGAGGAGGAGGTGAAGGAGGAGGACTTGCAGAAGATGCCTTATTTAAAGGCGGTGGTGTTGGAAGGTTTAAGGCGCCACCCACCCGGCCACTTTGTGCTGCCGCATTCCGTCACGCAAGACGTCGTCTTGGATGGTTATGTGGTACCAAAGAAGGGGACGGTGAATTTCATGGTGGCGGATATGGGGTGGGATCCGGAGGTGTGGGAGGAGCCTATGGAGTTTAAGCCGGAGAGGTTTTTGAGTAAGGAGGGAGGAGATCAGGGGTTTGATATAACGGGGAGTAGAGAGATTAAGATGATGCCGTTTGGGGTAGGGAGGAGGATTTGCCCTGGTCTTGGGTTGGCTGTGCTTCATCTGGAGTATTTTGTGGCGAATTTGTTGTGGAAATTCGAGTGGAGAGGTGTGGAGGGAGAGGATGTTGACTTCGCGGAGAAGCAAGAGTTCACCATGGTCATGAGGAATCCATTGAAGGCGAACATTTCACCAAGAGTGATGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005351 GO:0005353 GO:0005355 GO:0005402 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0007275 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009605 GO:0009607 GO:0009624 GO:0009705 GO:0009791 GO:0009845 GO:0009909 GO:0009911 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0015755 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0031090 GO:0032501 GO:0032502 GO:0034219 GO:0034220 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046323 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051094 GO:0051119 GO:0051179 GO:0051234 GO:0051239 GO:0051240 GO:0051704 GO:0051707 GO:0055085 GO:0065007 GO:0071702 GO:0090351 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1902600 GO:1904659 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

507

Amino Acids

57.96

Weight (kDa)

7.66

Isoelectric Point (pI)

51.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	31 - 499	2.6e-98	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004614)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03090 AT5G17010 AT5G17010 AT5G17010 AT5G17010
fragaria_vesca	FvH4_7g33891 FvH4_7g33900
malus_domestica	MD01G1235500.v1.1 MD07G1308300.v1.1
prunus_persica	Prupe.2G325500_v2.0.a1
pyrus_communis	pycom01g24360 pycom07g28050
rosa_chinensis	RchiOBHm_Chr1g0384101 RchiOBHm_Chr1g0384111
rosa_laevigata	RLG00000026071 RLG00000026072
rosa_multiflora	Rmu_sc0031875.1_g000001
rosa_roxburghii	Rroxscaffold_4G00276980 Rroxscaffold_4G00276990
rosa_rugosa	Rorug01G0444800 Rorug01G0444900
rosa_samantha	Rh1AG470300 Rh1AG470400 Rh1BG427700 Rh1BG427800 Rh1CG440400 Rh1CG440500 Rh1DG460700 Rh1DG460800
rosa_wichuraiana	Rw1G040230 Rw1G040240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1146
Acc65I	GGTACC	1 cut(s)	1165
AccB1I	GGYRCC	3 cut(s)	281, 1095, 1165
AccBSI	CCGCTC	1 cut(s)	249
AccI	GTMKAC	1 cut(s)	822
AccII	CGCG	4 cut(s)	426, 473, 935, 1451
AccIII	TCCGGA	1 cut(s)	1216
AclWI	GGATC	3 cut(s)	953, 1208, 1221
AcoI	YGGCCR	1 cut(s)	1108
AcsI	RAATTY	3 cut(s)	1186, 1396, 1409
AcuI	CTGAAG	1 cut(s)	631
AcvI	CACGTG	1 cut(s)	375
AcyI	GRCGYC	3 cut(s)	282, 1096, 1143
AdeI	CACNNNGTG	1 cut(s)	1117
AfaI	GTAC	3 cut(s)	545, 810, 1167
AgsI	TTSAA	2 cut(s)	658, 1492
AjnI	CCWGG	3 cut(s)	8, 261, 1351
AluBI	AGCT	6 cut(s)	88, 126, 157, 354, 645, 844
AluI	AGCT	6 cut(s)	88, 126, 157, 354, 645, 844
Alw21I	GWGCWC	1 cut(s)	159
Alw26I	GTCTC	1 cut(s)	576
AlwI	GGATC	3 cut(s)	953, 1208, 1221
Ama87I	CYCGRG	2 cut(s)	158, 839
Aor13HI	TCCGGA	1 cut(s)	1216
AoxI	GGCC	7 cut(s)	97, 193, 264, 367, 444, 674, 1108
ApaI	GGGCCC	2 cut(s)	101, 448
ApeKI	GCWGC	5 cut(s)	123, 333, 937, 988, 1120
ApoI	RAATTY	3 cut(s)	1186, 1396, 1409
Asp718I	GGTACC	1 cut(s)	1165
AspLEI	GCGC	3 cut(s)	284, 937, 1098
AsuC2I	CCSGG	4 cut(s)	96, 305, 442, 1107
AsuHPI	GGTGA	8 cut(s)	16, 67, 196, 391, 1045, 1195, 1459, 1497
AsuII	TTCGAA	1 cut(s)	724
AvaI	CYCGRG	2 cut(s)	158, 839
AvaII	GGWCC	3 cut(s)	457, 622, 835
BaeGI	GKGCMC	2 cut(s)	101, 448
BamHI	GGATCC	1 cut(s)	1213
BanI	GGYRCC	3 cut(s)	281, 1095, 1165
BanII	GRGCYC	5 cut(s)	101, 159, 165, 448, 772
BbrPI	CACGTG	1 cut(s)	375
BbsI	GAAGAC	3 cut(s)	226, 280, 879
Bbv12I	GWGCWC	1 cut(s)	159
BbvCI	CCTCAGC	1 cut(s)	641
BbvI	GCAGC	5 cut(s)	135, 345, 924, 975, 1107
BccI	CCATC	4 cut(s)	65, 110, 173, 1148
BceAI	ACGGC	6 cut(s)	208, 215, 269, 295, 344, 1309
BciT130I	CCWGG	3 cut(s)	10, 263, 1353
BciVI	GTATCC	1 cut(s)	978
BcnI	CCSGG	4 cut(s)	96, 305, 442, 1107
BcoDI	GTCTC	1 cut(s)	576
BfmI	CTRYAG	1 cut(s)	938
BfoI	RGCGCY	2 cut(s)	285, 1099
BfuI	GTATCC	1 cut(s)	978
BglI	GCCNNNNNGGC	1 cut(s)	263
BisI	GCNGC	9 cut(s)	124, 334, 367, 380, 391, 938, 989, 1121, 1124
BlsI	GCNGC	9 cut(s)	125, 335, 368, 381, 392, 939, 990, 1122, 1125
Bme1390I	CCNGG	7 cut(s)	10, 96, 263, 305, 442, 1107, 1353
Bme18I	GGWCC	3 cut(s)	457, 622, 835
BmeT110I	CYCGRG	2 cut(s)	158, 839
BmrFI	CCNGG	7 cut(s)	10, 96, 263, 305, 442, 1107, 1353
BmsI	GCATC	5 cut(s)	222, 624, 769, 1047, 1311
BpiI	GAAGAC	3 cut(s)	226, 280, 879
BplI	GAGNNNNNCTC	2 cut(s)	573, 605
BpmI	CTGGAG	1 cut(s)	1400
Bpu10I	CCTNAGC	1 cut(s)	641
Bpu14I	TTCGAA	1 cut(s)	724
BpuEI	CTTGAG	1 cut(s)	683
BpuMI	CCSGG	4 cut(s)	96, 305, 442, 1107
BsaAI	YACGTR	1 cut(s)	375
BsaHI	GRCGYC	3 cut(s)	282, 1096, 1143
BsaJI	CCNNGG	4 cut(s)	303, 441, 1351, 1470
BsaWI	WCCGGW	1 cut(s)	1216
BsaXI	ACNNNNNCTCC	8 cut(s)	338, 368, 386, 416, 510, 540, 1425, 1455
Bse118I	RCCGGY	1 cut(s)	651
Bse1I	ACTGG	1 cut(s)	541
BseAI	TCCGGA	1 cut(s)	1216
BseBI	CCWGG	3 cut(s)	10, 263, 1353
BseDI	CCNNGG	4 cut(s)	303, 441, 1351, 1470
BseGI	GGATG	9 cut(s)	18, 57, 168, 465, 639, 660, 784, 1159, 1444
BseMII	CTCAG	1 cut(s)	655
BseNI	ACTGG	1 cut(s)	541
BseSI	GKGCMC	2 cut(s)	101, 448
BseXI	GCAGC	5 cut(s)	135, 345, 924, 975, 1107
BsgI	GTGCAG	1 cut(s)	998
Bsh1236I	CGCG	4 cut(s)	426, 473, 935, 1451
Bsh1285I	CGRYCG	1 cut(s)	298
BshFI	GGCC	7 cut(s)	99, 195, 266, 369, 446, 676, 1110
BshNI	GGYRCC	3 cut(s)	281, 1095, 1165
BsiEI	CGRYCG	1 cut(s)	298
BsiHKAI	GWGCWC	1 cut(s)	159
BsiHKCI	CYCGRG	2 cut(s)	158, 839
BsiSI	CCGG	8 cut(s)	95, 305, 441, 652, 912, 1107, 1217, 1250
BslFI	GGGAC	2 cut(s)	848, 1192
BsmAI	GTCTC	1 cut(s)	576
BsmFI	GGGAC	2 cut(s)	848, 1192
BsmI	GAATGC	1 cut(s)	1126
BsnI	GGCC	7 cut(s)	99, 195, 266, 369, 446, 676, 1110
BsoBI	CYCGRG	2 cut(s)	158, 839
Bsp119I	TTCGAA	1 cut(s)	724
Bsp120I	GGGCCC	2 cut(s)	97, 444
Bsp1286I	GDGCHC	5 cut(s)	101, 159, 165, 448, 772
Bsp13I	TCCGGA	1 cut(s)	1216
Bsp143I	GATC	5 cut(s)	603, 879, 945, 1213, 1279
Bsp19I	CCATGG	1 cut(s)	1470
Bsp68I	TCGCGA	1 cut(s)	473
BspANI	GGCC	7 cut(s)	99, 195, 266, 369, 446, 676, 1110
BspCNI	CTCAG	1 cut(s)	654
BspEI	TCCGGA	1 cut(s)	1216
BspFNI	CGCG	4 cut(s)	426, 473, 935, 1451
BspHI	TCATGA	1 cut(s)	1476
BspMAI	CTGCAG	1 cut(s)	942
BspPI	GGATC	3 cut(s)	953, 1208, 1221
BspT104I	TTCGAA	1 cut(s)	724
BspT107I	GGYRCC	3 cut(s)	281, 1095, 1165
BsrBI	CCGCTC	1 cut(s)	249
BsrFI	RCCGGY	1 cut(s)	651
BsrI	ACTGG	1 cut(s)	541
BssAI	RCCGGY	1 cut(s)	651
BssECI	CCNNGG	4 cut(s)	303, 441, 1351, 1470
BssMI	GATC	5 cut(s)	603, 879, 945, 1213, 1279
BssNI	GRCGYC	3 cut(s)	282, 1096, 1143
BssT1I	CCWWGG	1 cut(s)	1470
Bst2UI	CCWGG	3 cut(s)	10, 263, 1353
Bst4CI	ACNGT	3 cut(s)	479, 813, 1183
Bst6I	CTCTTC	2 cut(s)	612, 851
BstACI	GRCGYC	3 cut(s)	282, 1096, 1143
BstAPI	GCANNNNNTGC	1 cut(s)	1057
BstBAI	YACGTR	1 cut(s)	375
BstBI	TTCGAA	1 cut(s)	724
BstC8I	GCNNGC	6 cut(s)	187, 448, 560, 710, 772, 993
BstDEI	CTNAG	1 cut(s)	641
BstDSI	CCRYGG	1 cut(s)	1470
BstF5I	GGATG	9 cut(s)	18, 57, 168, 465, 639, 660, 784, 1159, 1444
BstFNI	CGCG	4 cut(s)	426, 473, 935, 1451
BstH2I	RGCGCY	2 cut(s)	285, 1099
BstHHI	GCGC	3 cut(s)	284, 937, 1098
BstKTI	GATC	5 cut(s)	606, 882, 948, 1216, 1282
BstMAI	GTCTC	1 cut(s)	576
BstMBI	GATC	5 cut(s)	603, 879, 945, 1213, 1279
BstMCI	CGRYCG	1 cut(s)	298
BstMWI	GCNNNNNNNGC	5 cut(s)	263, 290, 634, 985, 1057
BstNI	CCWGG	3 cut(s)	10, 263, 1353
BstSCI	CCNGG	7 cut(s)	8, 94, 261, 303, 440, 1105, 1351
BstSFI	CTRYAG	1 cut(s)	938
BstSLI	GKGCMC	2 cut(s)	101, 448
BstUI	CGCG	4 cut(s)	426, 473, 935, 1451
BstV1I	GCAGC	5 cut(s)	135, 345, 924, 975, 1107
BstV2I	GAAGAC	3 cut(s)	226, 280, 879
BstX2I	RGATCY	1 cut(s)	1213
BstYI	RGATCY	1 cut(s)	1213
BsuI	GTATCC	1 cut(s)	978
BsuRI	GGCC	7 cut(s)	99, 195, 266, 369, 446, 676, 1110
BtgI	CCRYGG	1 cut(s)	1470
BtgZI	GCGATG	1 cut(s)	813
BtsCI	GGATG	9 cut(s)	18, 57, 168, 465, 639, 660, 784, 1159, 1444
BtsI	GCAGTG	1 cut(s)	947
BtsIMutI	CAGTG	1 cut(s)	947
BtuMI	TCGCGA	1 cut(s)	473
Cac8I	GCNNGC	6 cut(s)	187, 448, 560, 710, 772, 993
CciI	TCATGA	1 cut(s)	1476
CfoI	GCGC	3 cut(s)	284, 937, 1098
Cfr10I	RCCGGY	1 cut(s)	651
CseI	GACGC	1 cut(s)	415
Csp6I	GTAC	3 cut(s)	544, 809, 1166
CviAII	CATG	6 cut(s)	550, 571, 949, 1192, 1471, 1477
CviQI	GTAC	3 cut(s)	544, 809, 1166
DdeI	CTNAG	1 cut(s)	641
DinI	GGCGCC	2 cut(s)	283, 1097
DpnI	GATC	5 cut(s)	605, 881, 947, 1215, 1281
DpnII	GATC	5 cut(s)	603, 879, 945, 1213, 1279
DraI	TTTAAA	1 cut(s)	1068
DraIII	CACNNNGTG	1 cut(s)	1117
EaeI	YGGCCR	1 cut(s)	1108
Eam1104I	CTCTTC	2 cut(s)	612, 851
EarI	CTCTTC	2 cut(s)	612, 851
EciI	GGCGGA	3 cut(s)	346, 377, 1214
Ecl136II	GAGCTC	1 cut(s)	157
Eco130I	CCWWGG	1 cut(s)	1470
Eco24I	GRGCYC	5 cut(s)	101, 159, 165, 448, 772
Eco47I	GGWCC	3 cut(s)	457, 622, 835
Eco53kI	GAGCTC	1 cut(s)	157
Eco57I	CTGAAG	1 cut(s)	631
Eco72I	CACGTG	1 cut(s)	375
Eco88I	CYCGRG	2 cut(s)	158, 839
EcoICRI	GAGCTC	1 cut(s)	157
EcoO109I	RGGNCCY	5 cut(s)	98, 265, 444, 457, 835
EcoRII	CCWGG	3 cut(s)	8, 261, 1351
EcoT14I	CCWWGG	1 cut(s)	1470
EcoT38I	GRGCYC	5 cut(s)	101, 159, 165, 448, 772
EgeI	GGCGCC	2 cut(s)	283, 1097
EheI	GGCGCC	2 cut(s)	283, 1097
ErhI	CCWWGG	1 cut(s)	1470
FaeI	CATG	6 cut(s)	553, 574, 952, 1195, 1474, 1480
FaqI	GGGAC	2 cut(s)	848, 1192
FatI	CATG	6 cut(s)	549, 570, 948, 1191, 1470, 1476
FauI	CCCGC	7 cut(s)	99, 194, 230, 235, 431, 455, 779
FblI	GTMKAC	1 cut(s)	822
Fnu4HI	GCNGC	9 cut(s)	124, 334, 367, 380, 391, 938, 989, 1121, 1124
FokI	GGATG	9 cut(s)	5, 44, 155, 452, 646, 647, 791, 1166, 1451
FriOI	GRGCYC	5 cut(s)	101, 159, 165, 448, 772
Fsp4HI	GCNGC	9 cut(s)	124, 334, 367, 380, 391, 938, 989, 1121, 1124
GlaI	GCGC	3 cut(s)	283, 936, 1097
GluI	GCNGC	9 cut(s)	124, 334, 367, 380, 391, 938, 989, 1121, 1124
GsuI	CTGGAG	1 cut(s)	1400
HaeII	RGCGCY	2 cut(s)	285, 1099
HaeIII	GGCC	7 cut(s)	99, 195, 266, 369, 446, 676, 1110
HapII	CCGG	8 cut(s)	95, 305, 441, 652, 912, 1107, 1217, 1250
HgaI	GACGC	1 cut(s)	415
HhaI	GCGC	3 cut(s)	284, 937, 1098
Hin1I	GRCGYC	3 cut(s)	282, 1096, 1143
Hin1II	CATG	6 cut(s)	553, 574, 952, 1195, 1474, 1480
Hin6I	GCGC	3 cut(s)	282, 935, 1096
HinP1I	GCGC	3 cut(s)	282, 935, 1096
HincII	GTYRAC	4 cut(s)	532, 790, 823, 1444
HindII	GTYRAC	4 cut(s)	532, 790, 823, 1444
HinfI	GANTC	7 cut(s)	324, 488, 519, 703, 726, 763, 1483
HpaII	CCGG	8 cut(s)	95, 305, 441, 652, 912, 1107, 1217, 1250
HphI	GGTGA	8 cut(s)	16, 67, 196, 391, 1045, 1195, 1459, 1497
Hpy166II	GTNNAC	5 cut(s)	532, 790, 823, 1444, 1467
Hpy188I	TCNGA	4 cut(s)	406, 731, 762, 898
Hpy188III	TCNNGA	6 cut(s)	472, 700, 848, 1217, 1379, 1477
Hpy8I	GTNNAC	5 cut(s)	532, 790, 823, 1444, 1467
Hpy99I	CGWCG	5 cut(s)	596, 824, 854, 871, 1148
HpyAV	CCTTC	8 cut(s)	118, 157, 429, 687, 1030, 1079, 1168, 1486
HpyCH4III	ACNGT	3 cut(s)	479, 813, 1183
HpyCH4IV	ACGT	3 cut(s)	374, 819, 1143
HpyCH4V	TGCA	3 cut(s)	940, 979, 1051
HpyF10VI	GCNNNNNNNGC	5 cut(s)	263, 290, 634, 985, 1057
HpyF3I	CTNAG	1 cut(s)	641
HpySE526I	ACGT	3 cut(s)	374, 819, 1143
Hsp92I	GRCGYC	3 cut(s)	282, 1096, 1143
Hsp92II	CATG	6 cut(s)	553, 574, 952, 1195, 1474, 1480
HspAI	GCGC	3 cut(s)	282, 935, 1096
KasI	GGCGCC	2 cut(s)	281, 1095
Kpn2I	TCCGGA	1 cut(s)	1216
KpnI	GGTACC	1 cut(s)	1169
Kzo9I	GATC	5 cut(s)	603, 879, 945, 1213, 1279
Lsp1109I	GCAGC	5 cut(s)	135, 345, 924, 975, 1107
LweI	GCATC	5 cut(s)	222, 624, 769, 1047, 1311
MaeII	ACGT	3 cut(s)	374, 819, 1143
MaeIII	GTNAC	1 cut(s)	1132
MalI	GATC	5 cut(s)	605, 881, 947, 1215, 1281
MbiI	CCGCTC	1 cut(s)	249
MboI	GATC	5 cut(s)	603, 879, 945, 1213, 1279
MboII	GAAGA	7 cut(s)	226, 280, 629, 755, 868, 884, 1066
MflI	RGATCY	1 cut(s)	1213
MhlI	GDGCHC	5 cut(s)	101, 159, 165, 448, 772
MluCI	AATT	4 cut(s)	667, 1186, 1396, 1409
Mly113I	GGCGCC	2 cut(s)	282, 1096
MlyI	GAGTC	1 cut(s)	528
MmeI	TCCRAC	3 cut(s)	267, 528, 1062
MroI	TCCGGA	1 cut(s)	1216
MseI	TTAA	5 cut(s)	1002, 1067, 1091, 1245, 1314
MslI	CAYNNNNRTG	1 cut(s)	1475
MspA1I	CMGCKG	1 cut(s)	628
MspI	CCGG	8 cut(s)	95, 305, 441, 652, 912, 1107, 1217, 1250
MspR9I	CCNGG	7 cut(s)	10, 96, 263, 305, 442, 1107, 1353
Mva1269I	GAATGC	1 cut(s)	1126
MvaI	CCWGG	3 cut(s)	10, 263, 1353
MvnI	CGCG	4 cut(s)	426, 473, 935, 1451
MwoI	GCNNNNNNNGC	5 cut(s)	263, 290, 634, 985, 1057
NarI	GGCGCC	2 cut(s)	282, 1096
NciI	CCSGG	4 cut(s)	96, 305, 442, 1107
NcoI	CCATGG	1 cut(s)	1470
NdeII	GATC	5 cut(s)	603, 879, 945, 1213, 1279
NlaIII	CATG	6 cut(s)	553, 574, 952, 1195, 1474, 1480
NmuCI	GTSAC	1 cut(s)	1132
NruI	TCGCGA	1 cut(s)	473
NspV	TTCGAA	1 cut(s)	724
PaeR7I	CTCGAG	2 cut(s)	158, 839
PagI	TCATGA	1 cut(s)	1476
PcsI	WCGNNNNNNNCGW	1 cut(s)	846
PctI	GAATGC	1 cut(s)	1126
PfeI	GAWTC	6 cut(s)	324, 488, 703, 726, 763, 1483
PflFI	GACNNNGTC	1 cut(s)	1145
PkrI	GCNGC	9 cut(s)	125, 335, 368, 381, 392, 939, 990, 1122, 1125
PleI	GAGTC	1 cut(s)	527
PluTI	GGCGCC	2 cut(s)	285, 1099
PmaCI	CACGTG	1 cut(s)	375
PmlI	CACGTG	1 cut(s)	375
PpsI	GAGTC	1 cut(s)	527
Ppu21I	YACGTR	1 cut(s)	375
PpuMI	RGGWCCY	2 cut(s)	457, 835
Psp124BI	GAGCTC	1 cut(s)	159
Psp5II	RGGWCCY	2 cut(s)	457, 835
Psp6I	CCWGG	3 cut(s)	8, 261, 1351
PspCI	CACGTG	1 cut(s)	375
PspGI	CCWGG	3 cut(s)	8, 261, 1351
PspOMI	GGGCCC	2 cut(s)	97, 444
PspPPI	RGGWCCY	2 cut(s)	457, 835
PspXI	VCTCGAGB	2 cut(s)	158, 839
PsrI	GAACNNNNNNTAC	4 cut(s)	536, 568, 907, 939
PstI	CTGCAG	1 cut(s)	942
PsuI	RGATCY	1 cut(s)	1213
PsyI	GACNNNGTC	1 cut(s)	1145
RruI	TCGCGA	1 cut(s)	473
RsaI	GTAC	3 cut(s)	545, 810, 1167
RsaNI	GTAC	3 cut(s)	544, 809, 1166
RseI	CAYNNNNRTG	1 cut(s)	1475
SacI	GAGCTC	1 cut(s)	159
SalI	GTCGAC	1 cut(s)	821
SaqAI	TTAA	5 cut(s)	1002, 1067, 1091, 1245, 1314
SatI	GCNGC	9 cut(s)	124, 334, 367, 380, 391, 938, 989, 1121, 1124
Sau3AI	GATC	5 cut(s)	603, 879, 945, 1213, 1279
SchI	GAGTC	1 cut(s)	528
ScrFI	CCNGG	7 cut(s)	10, 96, 263, 305, 442, 1107, 1353
SduI	GDGCHC	5 cut(s)	101, 159, 165, 448, 772
SfaNI	GCATC	5 cut(s)	222, 624, 769, 1047, 1311
SfcI	CTRYAG	1 cut(s)	938
SfoI	GGCGCC	2 cut(s)	283, 1097
Sfr274I	CTCGAG	2 cut(s)	158, 839
SfuI	TTCGAA	1 cut(s)	724
SinI	GGWCC	3 cut(s)	457, 622, 835
SlaI	CTCGAG	2 cut(s)	158, 839
SmiMI	CAYNNNNRTG	1 cut(s)	1475
SmlI	CTYRAG	3 cut(s)	158, 698, 839
SmoI	CTYRAG	3 cut(s)	158, 698, 839
Sse9I	AATT	4 cut(s)	667, 1186, 1396, 1409
SspDI	GGCGCC	2 cut(s)	281, 1095
SspI	AATATT	1 cut(s)	958
SstI	GAGCTC	1 cut(s)	159
StyD4I	CCNGG	7 cut(s)	8, 94, 261, 303, 440, 1105, 1351
StyI	CCWWGG	1 cut(s)	1470
TaaI	ACNGT	3 cut(s)	479, 813, 1183
TaiI	ACGT	3 cut(s)	377, 822, 1146
TaqI	TCGA	9 cut(s)	159, 462, 591, 615, 724, 766, 822, 840, 1413
TasI	AATT	4 cut(s)	667, 1186, 1396, 1409
TatI	WGTACW	1 cut(s)	808
TauI	GCSGC	4 cut(s)	369, 382, 393, 1126
TfiI	GAWTC	6 cut(s)	324, 488, 703, 726, 763, 1483
Tru1I	TTAA	5 cut(s)	1002, 1067, 1091, 1245, 1314
Tru9I	TTAA	5 cut(s)	1002, 1067, 1091, 1245, 1314
TscAI	CASTG	1 cut(s)	947
TseFI	GTSAC	1 cut(s)	1132
TseI	GCWGC	5 cut(s)	123, 333, 937, 988, 1120
Tsp45I	GTSAC	1 cut(s)	1132
TspDTI	ATGAA	4 cut(s)	226, 669, 1180, 1364
TspGWI	ACGGA	6 cut(s)	167, 500, 522, 884, 960, 1120
TspRI	CASTG	1 cut(s)	947
Tth111I	GACNNNGTC	1 cut(s)	1145
VpaK11BI	GGWCC	3 cut(s)	457, 622, 835
XapI	RAATTY	3 cut(s)	1186, 1396, 1409
XhoI	CTCGAG	2 cut(s)	158, 839
XmiI	GTMKAC	1 cut(s)	822
ZraI	GACGTC	1 cut(s)	1144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.