Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0004614

Physical Location & Seq

Genomic Coordinates Reverse (-)

54148494 .. 54148952

Gene Structure 459 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0444900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGCTCTTAGTCTCTTTGGCACCGGCCGACGTAGCAACGTCTTCGACCTATTTTCCCTCGACATCTGGGATCCCTTCCAAGGTATAGGCTCGCTGTATGTGACTTGTGGGAGGGTGGGGGATGCACAGAAGGTGTTCGATGAAATGTCTAAAAGAGATGTGATTGTTTGGAATTTGATGATTCATGGGTTTTGCAAGAGTGGCAATGTCGATACTGGGTTGTGTTTGTTTAGGAAGATGGGTGAGAGGAATGTTATTTCATGGAACTCGATGATTTCGTGCTTAGCGCACTGTGGGAGGGACAATGAAGCTTTGGGGTTTTTTAATGAGATGCGGGAGCAGGGTTTTGAACCGGATGAGGCTACTATGGTGTCGGTTTTTCCTGCGTACGCTCGGTTAGGGGATGTTGATGATGGGAAATGGATACGCTCTTATACAGATTCTGAAGGGCTTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005351 GO:0005353 GO:0005355 GO:0005402 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0007275 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009605 GO:0009607 GO:0009624 GO:0009705 GO:0009791 GO:0009845 GO:0009909 GO:0009911 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0015755 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0031090 GO:0032501 GO:0032502 GO:0034219 GO:0034220 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046323 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051094 GO:0051119 GO:0051179 GO:0051234 GO:0051239 GO:0051240 GO:0051704 GO:0051707 GO:0055085 GO:0065007 GO:0071702 GO:0090351 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1902600 GO:1904659 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

152

Amino Acids

17.1

Weight (kDa)

4.84

Isoelectric Point (pI)

35.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_1	PF12854	51 - 80	1.5e-07	PPR repeat
PPR_2	PF13041	52 - 85	1.5e-07	PPR repeat family
PPR	PF01535	56 - 85	1.3e-07	PPR repeat
PPR_2	PF13041	83 - 131	7e-12	PPR repeat family
PPR	PF01535	86 - 116	1.3e-08	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004614)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03090 AT5G17010 AT5G17010 AT5G17010 AT5G17010
fragaria_vesca	FvH4_7g33891 FvH4_7g33900
malus_domestica	MD01G1235500.v1.1 MD07G1308300.v1.1
prunus_persica	Prupe.2G325500_v2.0.a1
pyrus_communis	pycom01g24360 pycom07g28050
rosa_chinensis	RchiOBHm_Chr1g0384101 RchiOBHm_Chr1g0384111
rosa_laevigata	RLG00000026071 RLG00000026072
rosa_multiflora	Rmu_sc0031875.1_g000001
rosa_roxburghii	Rroxscaffold_4G00276980 Rroxscaffold_4G00276990
rosa_rugosa	Rorug01G0444800 Rorug01G0444900
rosa_samantha	Rh1AG470300 Rh1AG470400 Rh1BG427700 Rh1BG427800 Rh1CG440400 Rh1CG440500 Rh1DG460700 Rh1DG460800
rosa_wichuraiana	Rw1G040230 Rw1G040240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	20
AciI	CCGC	1 cut(s)	334
AclWI	GGATC	2 cut(s)	65, 78
AcoI	YGGCCR	1 cut(s)	25
AcsI	RAATTY	1 cut(s)	172
AfaI	GTAC	1 cut(s)	389
AfiI	CCNNNNNNNGG	1 cut(s)	80
AgsI	TTSAA	1 cut(s)	350
AluBI	AGCT	1 cut(s)	311
AluI	AGCT	1 cut(s)	311
Alw26I	GTCTC	1 cut(s)	17
AlwI	GGATC	2 cut(s)	65, 78
AlwNI	CAGNNNCTG	1 cut(s)	443
AoxI	GGCC	1 cut(s)	25
ApoI	RAATTY	1 cut(s)	172
Asp700I	GAANNNNTTC	2 cut(s)	134, 450
AspLEI	GCGC	1 cut(s)	289
AsuHPI	GGTGA	1 cut(s)	254
BamHI	GGATCC	1 cut(s)	70
BanI	GGYRCC	1 cut(s)	20
BbsI	GAAGAC	1 cut(s)	34
BccI	CCATC	2 cut(s)	232, 407
BcgI	CGANNNNNNTGC	2 cut(s)	25, 59
BciVI	GTATCC	1 cut(s)	417
BcoDI	GTCTC	1 cut(s)	17
BfuI	GTATCC	1 cut(s)	417
BlpI	GCTNAGC	1 cut(s)	283
BmiI	GGNNCC	2 cut(s)	22, 72
BmrI	ACTGGG	1 cut(s)	225
BmsI	GCATC	2 cut(s)	112, 321
BmuI	ACTGGG	1 cut(s)	225
BpiI	GAAGAC	1 cut(s)	34
Bpu1102I	GCTNAGC	1 cut(s)	283
BsaJI	CCNNGG	1 cut(s)	79
BsaWI	WCCGGW	1 cut(s)	352
Bsc4I	CCNNNNNNNGG	1 cut(s)	80
Bse118I	RCCGGY	1 cut(s)	23
Bse1I	ACTGG	1 cut(s)	220
Bse3DI	GCAATG	1 cut(s)	211
BseDI	CCNNGG	1 cut(s)	79
BseGI	GGATG	3 cut(s)	127, 361, 409
BseLI	CCNNNNNNNGG	1 cut(s)	80
BseMI	GCAATG	1 cut(s)	211
BseNI	ACTGG	1 cut(s)	220
BseX3I	CGGCCG	1 cut(s)	25
Bsh1285I	CGRYCG	1 cut(s)	28
BshFI	GGCC	1 cut(s)	27
BshNI	GGYRCC	1 cut(s)	20
BsiEI	CGRYCG	1 cut(s)	28
BsiSI	CCGG	2 cut(s)	24, 353
BsiWI	CGTACG	1 cut(s)	387
BslFI	GGGAC	1 cut(s)	314
BslI	CCNNNNNNNGG	1 cut(s)	80
BsmAI	GTCTC	1 cut(s)	17
BsmFI	GGGAC	1 cut(s)	314
BsnI	GGCC	1 cut(s)	27
Bsp143I	GATC	1 cut(s)	70
Bsp1720I	GCTNAGC	1 cut(s)	283
BspACI	CCGC	1 cut(s)	334
BspANI	GGCC	1 cut(s)	27
BspLI	GGNNCC	2 cut(s)	22, 72
BspPI	GGATC	2 cut(s)	65, 78
BspT107I	GGYRCC	1 cut(s)	20
BsrDI	GCAATG	1 cut(s)	211
BsrFI	RCCGGY	1 cut(s)	23
BsrI	ACTGG	1 cut(s)	220
BssAI	RCCGGY	1 cut(s)	23
BssECI	CCNNGG	1 cut(s)	79
BssMI	GATC	1 cut(s)	70
BssT1I	CCWWGG	1 cut(s)	79
Bst4CI	ACNGT	1 cut(s)	293
BstC8I	GCNNGC	1 cut(s)	92
BstDEI	CTNAG	2 cut(s)	8, 283
BstF5I	GGATG	3 cut(s)	127, 361, 409
BstHHI	GCGC	1 cut(s)	289
BstKTI	GATC	1 cut(s)	73
BstMAI	GTCTC	1 cut(s)	17
BstMBI	GATC	1 cut(s)	70
BstMCI	CGRYCG	1 cut(s)	28
BstMWI	GCNNNNNNNGC	2 cut(s)	33, 201
BstV2I	GAAGAC	1 cut(s)	34
BstX2I	RGATCY	1 cut(s)	70
BstYI	RGATCY	1 cut(s)	70
BstZI	CGGCCG	1 cut(s)	25
BsuI	GTATCC	1 cut(s)	417
BsuRI	GGCC	1 cut(s)	27
BtsCI	GGATG	3 cut(s)	127, 361, 409
BtsIMutI	CAGTG	1 cut(s)	289
Cac8I	GCNNGC	1 cut(s)	92
CaiI	CAGNNNCTG	1 cut(s)	443
CfoI	GCGC	1 cut(s)	289
Cfr10I	RCCGGY	1 cut(s)	23
Csp6I	GTAC	1 cut(s)	388
CviAII	CATG	2 cut(s)	185, 261
CviJI	RGCY	6 cut(s)	5, 27, 90, 311, 362, 451
CviKI_1	RGCY	6 cut(s)	5, 27, 90, 311, 362, 451
CviQI	GTAC	1 cut(s)	388
DdeI	CTNAG	2 cut(s)	8, 283
DpnI	GATC	1 cut(s)	72
DpnII	GATC	1 cut(s)	70
EaeI	YGGCCR	1 cut(s)	25
EagI	CGGCCG	1 cut(s)	25
EclXI	CGGCCG	1 cut(s)	25
Eco130I	CCWWGG	1 cut(s)	79
Eco52I	CGGCCG	1 cut(s)	25
EcoT14I	CCWWGG	1 cut(s)	79
ErhI	CCWWGG	1 cut(s)	79
FaeI	CATG	2 cut(s)	188, 264
FaiI	YATR	6 cut(s)	86, 99, 186, 262, 368, 435
FaqI	GGGAC	1 cut(s)	314
FatI	CATG	2 cut(s)	184, 260
FauI	CCCGC	1 cut(s)	327
FokI	GGATG	3 cut(s)	134, 368, 416
GlaI	GCGC	1 cut(s)	288
HaeIII	GGCC	1 cut(s)	27
HapII	CCGG	2 cut(s)	24, 353
HhaI	GCGC	1 cut(s)	289
Hin1II	CATG	2 cut(s)	188, 264
Hin6I	GCGC	1 cut(s)	287
HinP1I	GCGC	1 cut(s)	287
HindIII	AAGCTT	1 cut(s)	309
HinfI	GANTC	2 cut(s)	181, 440
HpaII	CCGG	2 cut(s)	24, 353
HphI	GGTGA	1 cut(s)	254
Hpy188I	TCNGA	1 cut(s)	445
Hpy99I	CGWCG	1 cut(s)	33
HpyAV	CCTTC	3 cut(s)	85, 124, 440
HpyCH4III	ACNGT	1 cut(s)	293
HpyCH4IV	ACGT	2 cut(s)	31, 39
HpyCH4V	TGCA	2 cut(s)	125, 195
HpyF10VI	GCNNNNNNNGC	2 cut(s)	33, 201
HpyF3I	CTNAG	2 cut(s)	8, 283
HpySE526I	ACGT	2 cut(s)	31, 39
Hsp92II	CATG	2 cut(s)	188, 264
HspAI	GCGC	1 cut(s)	287
Kzo9I	GATC	1 cut(s)	70
LmnI	GCTCC	1 cut(s)	337
LpnPI	CCDG	6 cut(s)	37, 52, 201, 326, 366, 396
LweI	GCATC	2 cut(s)	112, 321
MaeII	ACGT	2 cut(s)	31, 39
MaeIII	GTNAC	1 cut(s)	100
MalI	GATC	1 cut(s)	72
MboI	GATC	1 cut(s)	70
MboII	GAAGA	2 cut(s)	34, 247
MflI	RGATCY	1 cut(s)	70
MluCI	AATT	1 cut(s)	172
MnlI	CCTC	5 cut(s)	68, 105, 240, 291, 352
MroXI	GAANNNNTTC	2 cut(s)	134, 450
MseI	TTAA	1 cut(s)	324
MspI	CCGG	2 cut(s)	24, 353
MwoI	GCNNNNNNNGC	2 cut(s)	33, 201
NdeII	GATC	1 cut(s)	70
NlaIII	CATG	2 cut(s)	188, 264
NlaIV	GGNNCC	2 cut(s)	22, 72
NmuCI	GTSAC	1 cut(s)	100
PcsI	WCGNNNNNNNCGW	1 cut(s)	275
PdmI	GAANNNNTTC	2 cut(s)	134, 450
PfeI	GAWTC	2 cut(s)	181, 440
Pfl23II	CGTACG	1 cut(s)	387
PspLI	CGTACG	1 cut(s)	387
PspN4I	GGNNCC	2 cut(s)	22, 72
PstNI	CAGNNNCTG	1 cut(s)	443
PsuI	RGATCY	1 cut(s)	70
RsaI	GTAC	1 cut(s)	389
RsaNI	GTAC	1 cut(s)	388
SaqAI	TTAA	1 cut(s)	324
Sau3AI	GATC	1 cut(s)	70
SetI	ASST	6 cut(s)	34, 42, 51, 85, 135, 313
SfaNI	GCATC	2 cut(s)	112, 321
Sse9I	AATT	1 cut(s)	172
SsiI	CCGC	1 cut(s)	334
StyI	CCWWGG	1 cut(s)	79
TaaI	ACNGT	1 cut(s)	293
TaiI	ACGT	2 cut(s)	34, 42
TaqI	TCGA	5 cut(s)	45, 60, 138, 210, 269
TasI	AATT	1 cut(s)	172
TfiI	GAWTC	2 cut(s)	181, 440
Tru1I	TTAA	1 cut(s)	324
Tru9I	TTAA	1 cut(s)	324
TscAI	CASTG	1 cut(s)	296
TseFI	GTSAC	1 cut(s)	100
Tsp45I	GTSAC	1 cut(s)	100
TspDTI	ATGAA	4 cut(s)	156, 173, 249, 321
TspRI	CASTG	1 cut(s)	296
XapI	RAATTY	1 cut(s)	172
XmnI	GAANNNNTTC	2 cut(s)	134, 450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.