Rroxscaffold_4G00276980
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Reverse (-)
473953 .. 478111
4159 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00276980.1

Sequence Viewer

Length: 1494 bp
ATGGCCTCTTCTTCTCTCCCACAGGTGAGAAATCTTTCAGGTTCAGGTGACATTGGTGGTGCCAAGGAGCCTCTTCTTAATGGGGTGCATAAAAATTCACATAACTATTCTCTTCTTCTCGCACTACTCCCATTTTTATTCCCAGCTCTTGAAGGACTAGTATATGGCTATGATATTGGTGCCACGGCTTGTGCTACAATTTCCCTAGAGTCAGCCACGTTAAGTGGAGTATCATGGTATGACTTGTCATCTCTGCAAATTGGTCTCATAACTAGTGGCTCATTATCTGGTGCCTTGATTGGCTGTTTGTTGGCCTTCAATGCTGGTGACGTCTTAGGAAGGAGGTTTGAGTTGATTTCGGCTGCTGTATTGTATTCTGTTGGAGCTCTAGTAACGGCATTAGCGCCTGAATTCCCTGTTATGGTGATTGGGCGCATTCTATTTGGTATAGGGATTGGACTGGCAATGCATGCTGCCCCTATGTATATGGCTGAGACAGCTCCAAGTCAGATACGAGGTCAACTATTATCTCTAAAAGAGTTCTTTATAGTGATTGGGATGGTTATTGGTTTTGCAGTTGGTAGTGCTTTAGTGGACGTCTTTGGTGGTTGGCGTTATATGTACGGAGCTAGCATCCCTTTGGCACTAATTATGGGAATTGGAATGTGGTGGCTACCGGAGTCACCTAGATGGATCCTTCTACGCGCCATACAGGGAAAAGGAAATATGCATGATTTAAAAGAGACTGCAATATGCTGCTTGTGCCGGCTTAGGGGTAGAGCTATTGGTGATTCAGCTCCTGCACTAGTAGAGGAGATGCTTGAGGAGCTTTATTTTGTTGGTGAAGATAATAAACCTACATTAGGGGAGATGTTTCAAGGGAAATGCAAGAAAGCCCTTGTCATTGGTGCAGGATTAGTTTTGTTCCAACAGATCACAGGGCAACCAAGTGTGCTGTACTATGCTGCATCAATTTTTCAGAGTGCAGGGTTCTCTGCAGCAGCTGACGCAACACGGGTCTCAATTGTACTTGGTTTATTCAAGTTGGTAATGACTGGAGCAGCAGTGCTTGTTGTTGATAGATTTGGGAGGAGGCCTCTTCTACTTGGAGGTGTTTTGGGGATGGTGATCTCTTTATTCATGTTGGGATCATATTACCTTTTCTTGGACGATGCACCAGCTGTGGCTGCATTTGCACTGCTGCTCTATGTTGGGTGTTATCAGTTATCGTTTGGTCCGATTGGTTGGCTAATGATATCAGAGATTTTCCCGTTAAGATTTAGAGGGCAAGGACTGAGTATAGGAGTGCTTGTGAATTTTGCTGCAAATGCGCTAGTCACTTTTGCATTTTCCCCTCTAAAGGCGTTGCTGGGAGCTGGAATATTGTTTTATGTATTTGGAGCAATAGCTGTGGCATCTCTTTCTTTCGTTTTCTTCGTTGTCCCGGAGACAAAGGGTCTCACTCTTGAGGAAATTGAAGCCAAATGCCTTTAG

Protein Analysis

497

Amino Acids

52.77

Weight (kDa)

6.14

Isoelectric Point (pI)

40.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sugar_tr PF00083 47 - 494 1.2e-95 Sugar (and other) transporter
MFS_1 PF07690 80 - 356 3.8e-18 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 333, 600
AccB1I GGYRCC 3 cut(s) 59, 179, 290
AccII CGCG 1 cut(s) 705
AclWI GGATC 3 cut(s) 688, 701, 1156
AcsI RAATTY 3 cut(s) 94, 410, 1315
AcyI GRCGYC 2 cut(s) 330, 597
AfaI GTAC 3 cut(s) 623, 959, 1029
AfiI CCNNNNNNNGG 5 cut(s) 421, 772, 863, 1165, 1360
AgsI TTSAA 5 cut(s) 152, 319, 878, 1042, 1478
AhdI GACNNNNNGTC 1 cut(s) 1455
AhlI ACTAGT 3 cut(s) 157, 272, 805
Alw21I GWGCWC 1 cut(s) 388
Alw26I GTCTC 6 cut(s) 269, 488, 737, 1024, 1442, 1463
AlwI GGATC 3 cut(s) 688, 701, 1156
AlwNI CAGNNNCTG 2 cut(s) 800, 1004
AoxI GGCC 3 cut(s) 3, 312, 1094
ApoI RAATTY 3 cut(s) 94, 410, 1315
Asp700I GAANNNNTTC 1 cut(s) 34
AspLEI GCGC 4 cut(s) 406, 435, 707, 1333
AspS9I GGNCC 1 cut(s) 1235
AsuC2I CCSGG 1 cut(s) 1445
AsuHPI GGTGA 8 cut(s) 37, 59, 338, 436, 675, 800, 854, 1138
AsuNHI GCTAGC 1 cut(s) 629
AvaII GGWCC 1 cut(s) 1235
BamHI GGATCC 1 cut(s) 693
BanI GGYRCC 3 cut(s) 59, 179, 290
BanII GRGCYC 1 cut(s) 388
Bbv12I GWGCWC 1 cut(s) 388
BccI CCATC 3 cut(s) 553, 684, 1117
BceAI ACGGC 2 cut(s) 201, 411
BcnI CCSGG 1 cut(s) 1445
BcoDI GTCTC 6 cut(s) 269, 488, 737, 1024, 1442, 1463
BcuI ACTAGT 3 cut(s) 157, 272, 805
BfaI CTAG 8 cut(s) 158, 206, 273, 389, 630, 687, 806, 1334
BfmI CTRYAG 1 cut(s) 996
BfoI RGCGCY 1 cut(s) 407
Bme1390I CCNGG 1 cut(s) 1445
Bme18I GGWCC 1 cut(s) 1235
BmeRI GACNNNNNGTC 1 cut(s) 1455
BmgT120I GGNCC 1 cut(s) 1235
BmiI GGNNCC 5 cut(s) 61, 69, 181, 292, 695
BmrFI CCNGG 1 cut(s) 1445
BmsI GCATC 5 cut(s) 642, 807, 977, 1162, 1424
BmtI GCTAGC 1 cut(s) 633
BplI GAGNNNNNCTC 2 cut(s) 1081, 1113
BpmI CTGGAG 1 cut(s) 1077
Bpu10I CCTNAGC 1 cut(s) 770
BpuEI CTTGAG 2 cut(s) 842, 1487
BpuMI CCSGG 1 cut(s) 1445
BsaBI GATNNNNATC 1 cut(s) 1127
BsaHI GRCGYC 2 cut(s) 330, 597
BsaI GGTCTC 3 cut(s) 269, 1024, 1463
BsaJI CCNNGG 2 cut(s) 63, 183
BsaWI WCCGGW 1 cut(s) 676
BsaXI ACNNNNNCTCC 6 cut(s) 375, 405, 1050, 1080, 1296, 1326
Bsc4I CCNNNNNNNGG 5 cut(s) 421, 772, 863, 1165, 1360
Bse118I RCCGGY 1 cut(s) 765
Bse1I ACTGG 2 cut(s) 465, 1060
Bse3DI GCAATG 1 cut(s) 471
Bse8I GATNNNNATC 1 cut(s) 1127
BseDI CCNNGG 2 cut(s) 63, 183
BseGI GGATG 3 cut(s) 564, 633, 1128
BseJI GATNNNNATC 1 cut(s) 1127
BseLI CCNNNNNNNGG 5 cut(s) 421, 772, 863, 1165, 1360
BseMI GCAATG 1 cut(s) 471
BseMII CTCAG 2 cut(s) 483, 1286
BseNI ACTGG 2 cut(s) 465, 1060
BseRI GAGGAG 3 cut(s) 827, 839, 1105
BseYI CCCAGC 2 cut(s) 142, 1369
BsgI GTGCAG 3 cut(s) 786, 930, 1005
Bsh1236I CGCG 1 cut(s) 705
BshFI GGCC 3 cut(s) 5, 314, 1096
BshNI GGYRCC 3 cut(s) 59, 179, 290
BsiHKAI GWGCWC 1 cut(s) 388
BsiSI CCGG 3 cut(s) 677, 766, 1445
BslFI GGGAC 1 cut(s) 1427
BslI CCNNNNNNNGG 5 cut(s) 421, 772, 863, 1165, 1360
BsmAI GTCTC 6 cut(s) 269, 488, 737, 1024, 1442, 1463
BsmFI GGGAC 1 cut(s) 1427
BsmI GAATGC 1 cut(s) 435
BsnI GGCC 3 cut(s) 5, 314, 1096
Bso31I GGTCTC 3 cut(s) 269, 1024, 1463
Bsp1286I GDGCHC 1 cut(s) 388
Bsp143I GATC 4 cut(s) 693, 933, 1128, 1148
BspANI GGCC 3 cut(s) 5, 314, 1096
BspCNI CTCAG 2 cut(s) 484, 1287
BspFNI CGCG 1 cut(s) 705
BspLI GGNNCC 5 cut(s) 61, 69, 181, 292, 695
BspMAI CTGCAG 1 cut(s) 1000
BspOI GCTAGC 1 cut(s) 633
BspPI GGATC 3 cut(s) 688, 701, 1156
BspT107I GGYRCC 3 cut(s) 59, 179, 290
BspTNI GGTCTC 3 cut(s) 269, 1024, 1463
BsrDI GCAATG 1 cut(s) 471
BsrFI RCCGGY 1 cut(s) 765
BsrI ACTGG 2 cut(s) 465, 1060
BssAI RCCGGY 1 cut(s) 765
BssECI CCNNGG 2 cut(s) 63, 183
BssMI GATC 4 cut(s) 693, 933, 1128, 1148
BssNI GRCGYC 2 cut(s) 330, 597
BssT1I CCWWGG 1 cut(s) 63
Bst6I CTCTTC 4 cut(s) 13, 78, 117, 1104
BstACI GRCGYC 2 cut(s) 330, 597
BstAPI GCANNNNNTGC 1 cut(s) 470
BstC8I GCNNGC 3 cut(s) 471, 631, 767
BstDEI CTNAG 4 cut(s) 334, 492, 770, 1295
BstDSI CCRYGG 1 cut(s) 183
BstENI CCTNNNNNAGG 1 cut(s) 861
BstF5I GGATG 3 cut(s) 564, 633, 1128
BstFNI CGCG 1 cut(s) 705
BstH2I RGCGCY 1 cut(s) 407
BstHHI GCGC 4 cut(s) 406, 435, 707, 1333
BstKTI GATC 4 cut(s) 696, 936, 1131, 1151
BstMAI GTCTC 6 cut(s) 269, 488, 737, 1024, 1442, 1463
BstMBI GATC 4 cut(s) 693, 933, 1128, 1148
BstMWI GCNNNNNNNGC 9 cut(s) 320, 470, 497, 762, 826, 1007, 1187, 1193, 1328
BstNSI RCATGY 1 cut(s) 473
BstSCI CCNGG 1 cut(s) 1443
BstSFI CTRYAG 1 cut(s) 996
BstUI CGCG 1 cut(s) 705
BstX2I RGATCY 1 cut(s) 693
BstYI RGATCY 1 cut(s) 693
BsuRI GGCC 3 cut(s) 5, 314, 1096
BtgI CCRYGG 1 cut(s) 183
BtsCI GGATG 3 cut(s) 564, 633, 1128
BtsI GCAGTG 2 cut(s) 1071, 1196
BtsIMutI CAGTG 2 cut(s) 1071, 1196
Cac8I GCNNGC 3 cut(s) 471, 631, 767
CaiI CAGNNNCTG 2 cut(s) 800, 1004
CfoI GCGC 4 cut(s) 406, 435, 707, 1333
Cfr10I RCCGGY 1 cut(s) 765
Cfr13I GGNCC 1 cut(s) 1235
CseI GACGC 1 cut(s) 1016
Csp6I GTAC 3 cut(s) 622, 958, 1028
CspCI CAANNNNNGTGG 2 cut(s) 1392, 1427
CviAII CATG 4 cut(s) 234, 470, 731, 1141
CviQI GTAC 3 cut(s) 622, 958, 1028
DdeI CTNAG 4 cut(s) 334, 492, 770, 1295
DpnI GATC 4 cut(s) 695, 935, 1130, 1150
DpnII GATC 4 cut(s) 693, 933, 1128, 1148
DraI TTTAAA 1 cut(s) 738
DriI GACNNNNNGTC 1 cut(s) 1455
Eam1104I CTCTTC 4 cut(s) 13, 78, 117, 1104
Eam1105I GACNNNNNGTC 1 cut(s) 1455
EarI CTCTTC 4 cut(s) 13, 78, 117, 1104
Ecl136II GAGCTC 1 cut(s) 386
Eco130I CCWWGG 1 cut(s) 63
Eco147I AGGCCT 1 cut(s) 1096
Eco24I GRGCYC 1 cut(s) 388
Eco31I GGTCTC 3 cut(s) 269, 1024, 1463
Eco32I GATATC 1 cut(s) 1257
Eco47I GGWCC 1 cut(s) 1235
Eco53kI GAGCTC 1 cut(s) 386
EcoICRI GAGCTC 1 cut(s) 386
EcoNI CCTNNNNNAGG 1 cut(s) 861
EcoRI GAATTC 1 cut(s) 410
EcoRV GATATC 1 cut(s) 1257
EcoT14I CCWWGG 1 cut(s) 63
EcoT22I ATGCAT 2 cut(s) 471, 732
EcoT38I GRGCYC 1 cut(s) 388
ErhI CCWWGG 1 cut(s) 63
FaeI CATG 4 cut(s) 237, 473, 734, 1144
FaqI GGGAC 1 cut(s) 1427
FatI CATG 4 cut(s) 233, 469, 730, 1140
FokI GGATG 3 cut(s) 571, 620, 1135
FriOI GRGCYC 1 cut(s) 388
FspBI CTAG 8 cut(s) 158, 206, 273, 389, 630, 687, 806, 1334
GlaI GCGC 4 cut(s) 405, 434, 706, 1332
GsaI CCCAGC 2 cut(s) 146, 1373
GsuI CTGGAG 1 cut(s) 1077
HaeII RGCGCY 1 cut(s) 407
HaeIII GGCC 3 cut(s) 5, 314, 1096
HapII CCGG 3 cut(s) 677, 766, 1445
HgaI GACGC 1 cut(s) 1016
HhaI GCGC 4 cut(s) 406, 435, 707, 1333
Hin1I GRCGYC 2 cut(s) 330, 597
Hin1II CATG 4 cut(s) 237, 473, 734, 1144
Hin6I GCGC 4 cut(s) 404, 433, 705, 1331
HinP1I GCGC 4 cut(s) 404, 433, 705, 1331
HincII GTYRAC 1 cut(s) 521
HindII GTYRAC 1 cut(s) 521
HinfI GANTC 3 cut(s) 209, 680, 791
HpaII CCGG 3 cut(s) 677, 766, 1445
HphI GGTGA 8 cut(s) 37, 59, 338, 436, 675, 800, 854, 1138
Hpy166II GTNNAC 2 cut(s) 521, 595
Hpy188I TCNGA 4 cut(s) 510, 981, 1239, 1261
Hpy188III TCNNGA 2 cut(s) 149, 1466
Hpy8I GTNNAC 2 cut(s) 521, 595
HpyAV CCTTC 4 cut(s) 146, 325, 333, 707
HpyCH4IV ACGT 3 cut(s) 218, 330, 597
HpyF10VI GCNNNNNNNGC 9 cut(s) 320, 470, 497, 762, 826, 1007, 1187, 1193, 1328
HpyF3I CTNAG 4 cut(s) 334, 492, 770, 1295
HpySE526I ACGT 3 cut(s) 218, 330, 597
Hsp92I GRCGYC 2 cut(s) 330, 597
Hsp92II CATG 4 cut(s) 237, 473, 734, 1144
HspAI GCGC 4 cut(s) 404, 433, 705, 1331
KroI GCCGGC 1 cut(s) 765
KroNI GCCGGC 1 cut(s) 767
Kzo9I GATC 4 cut(s) 693, 933, 1128, 1148
LmnI GCTCC 9 cut(s) 67, 383, 505, 626, 802, 826, 1058, 1373, 1400
LweI GCATC 5 cut(s) 642, 807, 977, 1162, 1424
MaeI CTAG 8 cut(s) 158, 206, 273, 389, 630, 687, 806, 1334
MaeII ACGT 3 cut(s) 218, 330, 597
MaeIII GTNAC 5 cut(s) 47, 326, 391, 681, 1336
MalI GATC 4 cut(s) 695, 935, 1130, 1150
MboI GATC 4 cut(s) 693, 933, 1128, 1148
MboII GAAGA 7 cut(s) 3, 65, 104, 107, 857, 1091, 1426
MfeI CAATTG 1 cut(s) 1023
MflI RGATCY 1 cut(s) 693
MhlI GDGCHC 1 cut(s) 388
MlyI GAGTC 2 cut(s) 218, 689
MmeI TCCRAC 2 cut(s) 361, 952
Mph1103I ATGCAT 2 cut(s) 471, 732
MroNI GCCGGC 1 cut(s) 765
MroXI GAANNNNTTC 1 cut(s) 34
MseI TTAA 4 cut(s) 78, 221, 737, 1274
MslI CAYNNNNRTG 1 cut(s) 688
MspA1I CMGCKG 2 cut(s) 1004, 1181
MspI CCGG 3 cut(s) 677, 766, 1445
MspR9I CCNGG 1 cut(s) 1445
MunI CAATTG 1 cut(s) 1023
Mva1269I GAATGC 1 cut(s) 435
MvnI CGCG 1 cut(s) 705
MwoI GCNNNNNNNGC 9 cut(s) 320, 470, 497, 762, 826, 1007, 1187, 1193, 1328
NaeI GCCGGC 1 cut(s) 767
NciI CCSGG 1 cut(s) 1445
NdeII GATC 4 cut(s) 693, 933, 1128, 1148
NgoMIV GCCGGC 1 cut(s) 765
NheI GCTAGC 1 cut(s) 629
NlaIII CATG 4 cut(s) 237, 473, 734, 1144
NlaIV GGNNCC 5 cut(s) 61, 69, 181, 292, 695
NmuCI GTSAC 4 cut(s) 47, 326, 681, 1336
NsiI ATGCAT 2 cut(s) 471, 732
NspI RCATGY 1 cut(s) 473
PaeI GCATGC 1 cut(s) 473
PceI AGGCCT 1 cut(s) 1096
PcsI WCGNNNNNNNCGW 2 cut(s) 1235, 1434
PctI GAATGC 1 cut(s) 435
PdiI GCCGGC 1 cut(s) 767
PdmI GAANNNNTTC 1 cut(s) 34
PfeI GAWTC 1 cut(s) 791
PfoI TCCNGGA 1 cut(s) 1443
PleI GAGTC 2 cut(s) 217, 688
PpsI GAGTC 2 cut(s) 217, 688
Psp124BI GAGCTC 1 cut(s) 388
PspFI CCCAGC 2 cut(s) 142, 1369
PspN4I GGNNCC 5 cut(s) 61, 69, 181, 292, 695
PspPI GGNCC 1 cut(s) 1235
PstI CTGCAG 1 cut(s) 1000
PstNI CAGNNNCTG 2 cut(s) 800, 1004
PsuI RGATCY 1 cut(s) 693
PvuII CAGCTG 2 cut(s) 1004, 1181
RsaI GTAC 3 cut(s) 623, 959, 1029
RsaNI GTAC 3 cut(s) 622, 958, 1028
RseI CAYNNNNRTG 1 cut(s) 688
SacI GAGCTC 1 cut(s) 388
SaqAI TTAA 4 cut(s) 78, 221, 737, 1274
Sau3AI GATC 4 cut(s) 693, 933, 1128, 1148
Sau96I GGNCC 1 cut(s) 1235
SchI GAGTC 2 cut(s) 218, 689
ScrFI CCNGG 1 cut(s) 1445
SduI GDGCHC 1 cut(s) 388
SfaNI GCATC 5 cut(s) 642, 807, 977, 1162, 1424
SfcI CTRYAG 1 cut(s) 996
SinI GGWCC 1 cut(s) 1235
SmiMI CAYNNNNRTG 1 cut(s) 688
SmlI CTYRAG 2 cut(s) 821, 1466
SmoI CTYRAG 2 cut(s) 821, 1466
SpeI ACTAGT 3 cut(s) 157, 272, 805
SphI GCATGC 1 cut(s) 473
SseBI AGGCCT 1 cut(s) 1096
SspI AATATT 1 cut(s) 1383
SspMI CTAG 8 cut(s) 158, 206, 273, 389, 630, 687, 806, 1334
SstI GAGCTC 1 cut(s) 388
StuI AGGCCT 1 cut(s) 1096
StyD4I CCNGG 1 cut(s) 1443
StyI CCWWGG 1 cut(s) 63
TaiI ACGT 3 cut(s) 221, 333, 600
TatI WGTACW 2 cut(s) 957, 1027
TfiI GAWTC 1 cut(s) 791
Tru1I TTAA 4 cut(s) 78, 221, 737, 1274
Tru9I TTAA 4 cut(s) 78, 221, 737, 1274
TscAI CASTG 2 cut(s) 1071, 1203
TseFI GTSAC 4 cut(s) 47, 326, 681, 1336
Tsp45I GTSAC 4 cut(s) 47, 326, 681, 1336
TspDTI ATGAA 1 cut(s) 1129
TspGWI ACGGA 1 cut(s) 639
TspRI CASTG 2 cut(s) 1071, 1203
VpaK11BI GGWCC 1 cut(s) 1235
XagI CCTNNNNNAGG 1 cut(s) 861
XapI RAATTY 3 cut(s) 94, 410, 1315
XceI RCATGY 1 cut(s) 473
XmnI GAANNNNTTC 1 cut(s) 34
XspI CTAG 8 cut(s) 158, 206, 273, 389, 630, 687, 806, 1334
ZraI GACGTC 2 cut(s) 331, 598
Zsp2I ATGCAT 2 cut(s) 471, 732
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.