Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0031875.1

Orthogroup ID

OG0004614

Physical Location & Seq

Genomic Coordinates Reverse (-)

1156 .. 3057

Gene Structure 1902 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0031875.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

atgtatggagctagtatccctctggcagtaattatgggaattggaatgtggtggctaccagagtcacctagatggatccttctacgtgccatccaaggaaaaggaaatatgactgatatgaaaaatactgcaatcagttgcttgttccggcttaggggtacgattattggtgattcagctcctgcactagtagatgagatgcttgatgagctttcttatgttggtgaagagaaaaaagcttcattcttagagttgtttcgtggaaaatgcaaaaaagccctcgtgattggtgcaggattagtgttgttccaacagatcacagggcaaccaagtgtgctgtattatgctgcatcaatttttcagactgcaggattctccgcagcatctgatgcaacagaggtctcaattatacttgggttattcaagttggtaatgactggactagctgtgcttgttgttgatagacttgggaggagacctctactacttacaggtgttactgggatggtcatctctttattccttttggggtcatattaccttttctttgatgatacaccagccatagctgtaattgcactgctggcatatgttgggtgttatcagttctcctttggtcccattggttggctcatgatatcagaaatttttcccttgcgattaagagggcgcggacttagcatagcagtgcttgtgaactttgctgcaaatgcactggtgacattttcattttcccctctagaggcatggctgggagctgggatagtgttttatgtatttggagtaatagctgtggtatctcttgtcttcattttcttcattgtcccagagacaaaggggcttactctcgaggaaattgagatcaaatgcctttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005351 GO:0005353 GO:0005355 GO:0005402 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0007275 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009605 GO:0009607 GO:0009624 GO:0009705 GO:0009791 GO:0009845 GO:0009909 GO:0009911 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0015755 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0031090 GO:0032501 GO:0032502 GO:0034219 GO:0034220 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046323 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051094 GO:0051119 GO:0051179 GO:0051234 GO:0051239 GO:0051240 GO:0051704 GO:0051707 GO:0055085 GO:0065007 GO:0071702 GO:0090351 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1902600 GO:1904659 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

291

Amino Acids

31.65

Weight (kDa)

6.36

Isoelectric Point (pI)

33.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004614)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03090 AT5G17010 AT5G17010 AT5G17010 AT5G17010
fragaria_vesca	FvH4_7g33891 FvH4_7g33900
malus_domestica	MD01G1235500.v1.1 MD07G1308300.v1.1
prunus_persica	Prupe.2G325500_v2.0.a1
pyrus_communis	pycom01g24360 pycom07g28050
rosa_chinensis	RchiOBHm_Chr1g0384101 RchiOBHm_Chr1g0384111
rosa_laevigata	RLG00000026071 RLG00000026072
rosa_multiflora	Rmu_sc0031875.1_g000001
rosa_roxburghii	Rroxscaffold_4G00276980 Rroxscaffold_4G00276990
rosa_rugosa	Rorug01G0444800 Rorug01G0444900
rosa_samantha	Rh1AG470300 Rh1AG470400 Rh1BG427700 Rh1BG427800 Rh1CG440400 Rh1CG440500 Rh1DG460700 Rh1DG460800
rosa_wichuraiana	Rw1G040230 Rw1G040240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	627
AccII	CGCG	1 cut(s)	672
AciI	CCGC	2 cut(s)	378, 672
AclWI	GGATC	2 cut(s)	70, 83
AcsI	RAATTY	1 cut(s)	645
AfaI	GTAC	1 cut(s)	160
AfiI	CCNNNNNNNGG	3 cut(s)	154, 627, 742
AgsI	TTSAA	1 cut(s)	424
AhlI	ACTAGT	1 cut(s)	187
AluBI	AGCT	8 cut(s)	11, 179, 211, 239, 446, 569, 758, 791
AluI	AGCT	8 cut(s)	11, 179, 211, 239, 446, 569, 758, 791
Alw26I	GTCTC	3 cut(s)	406, 469, 824
AlwI	GGATC	2 cut(s)	70, 83
AlwNI	CAGNNNCTG	2 cut(s)	182, 386
Ama87I	CYCGRG	1 cut(s)	848
ApeKI	GCWGC	3 cut(s)	347, 380, 704
ApoI	RAATTY	1 cut(s)	645
Asp700I	GAANNNNTTC	1 cut(s)	648
AspLEI	GCGC	1 cut(s)	672
AspS9I	GGNCC	1 cut(s)	617
AsuHPI	GGTGA	4 cut(s)	57, 182, 236, 730
AvaI	CYCGRG	1 cut(s)	848
AvaII	GGWCC	1 cut(s)	617
BamHI	GGATCC	1 cut(s)	75
BauI	CACGAG	1 cut(s)	281
BbsI	GAAGAC	1 cut(s)	799
BbvI	GCAGC	3 cut(s)	334, 392, 691
BccI	CCATC	3 cut(s)	66, 98, 499
BciVI	GTATCC	1 cut(s)	26
BcoDI	GTCTC	3 cut(s)	406, 469, 824
BcuI	ACTAGT	1 cut(s)	187
BfaI	CTAG	5 cut(s)	12, 69, 188, 443, 740
BfmI	CTRYAG	1 cut(s)	366
BfuI	GTATCC	1 cut(s)	26
BisI	GCNGC	3 cut(s)	348, 381, 705
BlsI	GCNGC	3 cut(s)	349, 382, 706
Bme18I	GGWCC	1 cut(s)	617
BmeT110I	CYCGRG	1 cut(s)	848
BmgT120I	GGNCC	1 cut(s)	617
BmiI	GGNNCC	2 cut(s)	77, 619
BmrI	ACTGGG	1 cut(s)	510
BmsI	GCATC	4 cut(s)	189, 359, 379, 392
BmuI	ACTGGG	1 cut(s)	510
BpiI	GAAGAC	1 cut(s)	799
BplI	GAGNNNNNCTC	2 cut(s)	463, 495
Bpu10I	CCTNAGC	1 cut(s)	152
BsaAI	YACGTR	1 cut(s)	86
BsaBI	GATNNNNATC	1 cut(s)	509
BsaI	GGTCTC	2 cut(s)	406, 469
BsaJI	CCNNGG	1 cut(s)	94
Bsc4I	CCNNNNNNNGG	3 cut(s)	154, 627, 742
Bse1I	ACTGG	3 cut(s)	442, 505, 720
Bse8I	GATNNNNATC	1 cut(s)	509
BseDI	CCNNGG	1 cut(s)	94
BseGI	GGATG	2 cut(s)	90, 510
BseJI	GATNNNNATC	1 cut(s)	509
BseLI	CCNNNNNNNGG	3 cut(s)	154, 627, 742
BseNI	ACTGG	3 cut(s)	442, 505, 720
BseRI	GAGGAG	1 cut(s)	487
BseXI	GCAGC	3 cut(s)	334, 392, 691
BseYI	CCCAGC	2 cut(s)	751, 758
BsgI	GTGCAG	2 cut(s)	168, 312
Bsh1236I	CGCG	1 cut(s)	672
BsiHKCI	CYCGRG	1 cut(s)	848
BsiSI	CCGG	1 cut(s)	148
BslFI	GGGAC	2 cut(s)	603, 809
BslI	CCNNNNNNNGG	3 cut(s)	154, 627, 742
BsmAI	GTCTC	3 cut(s)	406, 469, 824
BsmFI	GGGAC	2 cut(s)	603, 809
Bso31I	GGTCTC	2 cut(s)	406, 469
BsoBI	CYCGRG	1 cut(s)	848
Bsp143I	GATC	3 cut(s)	75, 315, 861
BspACI	CCGC	2 cut(s)	378, 672
BspFNI	CGCG	1 cut(s)	672
BspHI	TCATGA	1 cut(s)	633
BspLI	GGNNCC	2 cut(s)	77, 619
BspMAI	CTGCAG	1 cut(s)	370
BspPI	GGATC	2 cut(s)	70, 83
BspTNI	GGTCTC	2 cut(s)	406, 469
BsrI	ACTGG	3 cut(s)	442, 505, 720
BssECI	CCNNGG	1 cut(s)	94
BssMI	GATC	3 cut(s)	75, 315, 861
BssSI	CACGAG	1 cut(s)	281
BssT1I	CCWWGG	1 cut(s)	94
Bst2BI	CACGAG	1 cut(s)	281
Bst6I	CTCTTC	1 cut(s)	222
BstAPI	GCANNNNNTGC	1 cut(s)	389
BstBAI	YACGTR	1 cut(s)	86
BstC8I	GCNNGC	1 cut(s)	585
BstDEI	CTNAG	3 cut(s)	152, 247, 677
BstF5I	GGATG	2 cut(s)	90, 510
BstFNI	CGCG	1 cut(s)	672
BstHHI	GCGC	1 cut(s)	672
BstKTI	GATC	3 cut(s)	78, 318, 864
BstMAI	GTCTC	3 cut(s)	406, 469, 824
BstMBI	GATC	3 cut(s)	75, 315, 861
BstMWI	GCNNNNNNNGC	6 cut(s)	208, 389, 575, 584, 678, 710
BstSFI	CTRYAG	1 cut(s)	366
BstUI	CGCG	1 cut(s)	672
BstV1I	GCAGC	3 cut(s)	334, 392, 691
BstV2I	GAAGAC	1 cut(s)	799
BstX2I	RGATCY	1 cut(s)	75
BstYI	RGATCY	1 cut(s)	75
BsuI	GTATCC	1 cut(s)	26
BtsCI	GGATG	2 cut(s)	90, 510
BtsI	GCAGTG	2 cut(s)	578, 693
BtsIMutI	CAGTG	3 cut(s)	578, 693, 713
Cac8I	GCNNGC	1 cut(s)	585
CaiI	CAGNNNCTG	2 cut(s)	182, 386
CciI	TCATGA	1 cut(s)	633
CfoI	GCGC	1 cut(s)	672
Cfr13I	GGNCC	1 cut(s)	617
Csp6I	GTAC	1 cut(s)	159
CviAII	CATG	2 cut(s)	634, 747
CviQI	GTAC	1 cut(s)	159
DdeI	CTNAG	3 cut(s)	152, 247, 677
DpnI	GATC	3 cut(s)	77, 317, 863
DpnII	GATC	3 cut(s)	75, 315, 861
Eam1104I	CTCTTC	1 cut(s)	222
EarI	CTCTTC	1 cut(s)	222
Eco130I	CCWWGG	1 cut(s)	94
Eco31I	GGTCTC	2 cut(s)	406, 469
Eco32I	GATATC	1 cut(s)	639
Eco47I	GGWCC	1 cut(s)	617
Eco88I	CYCGRG	1 cut(s)	848
EcoRV	GATATC	1 cut(s)	639
EcoT14I	CCWWGG	1 cut(s)	94
ErhI	CCWWGG	1 cut(s)	94
FaeI	CATG	2 cut(s)	637, 750
FaqI	GGGAC	2 cut(s)	603, 809
FatI	CATG	2 cut(s)	633, 746
FauNDI	CATATG	1 cut(s)	589
Fnu4HI	GCNGC	3 cut(s)	348, 381, 705
FokI	GGATG	2 cut(s)	77, 517
Fsp4HI	GCNGC	3 cut(s)	348, 381, 705
FspBI	CTAG	5 cut(s)	12, 69, 188, 443, 740
GlaI	GCGC	1 cut(s)	671
GluI	GCNGC	3 cut(s)	348, 381, 705
GsaI	CCCAGC	2 cut(s)	755, 762
HapII	CCGG	1 cut(s)	148
HhaI	GCGC	1 cut(s)	672
Hin1II	CATG	2 cut(s)	637, 750
Hin6I	GCGC	1 cut(s)	670
HinP1I	GCGC	1 cut(s)	670
HindIII	AAGCTT	1 cut(s)	237
HinfI	GANTC	3 cut(s)	62, 173, 372
HpaII	CCGG	1 cut(s)	148
HphI	GGTGA	4 cut(s)	57, 182, 236, 730
Hpy166II	GTNNAC	1 cut(s)	697
Hpy188I	TCNGA	3 cut(s)	363, 388, 643
Hpy188III	TCNNGA	4 cut(s)	283, 634, 740, 848
Hpy8I	GTNNAC	1 cut(s)	697
HpyAV	CCTTC	1 cut(s)	89
HpyCH4IV	ACGT	1 cut(s)	85
HpyF10VI	GCNNNNNNNGC	6 cut(s)	208, 389, 575, 584, 678, 710
HpyF3I	CTNAG	3 cut(s)	152, 247, 677
HpySE526I	ACGT	1 cut(s)	85
Hsp92II	CATG	2 cut(s)	637, 750
HspAI	GCGC	1 cut(s)	670
Kzo9I	GATC	3 cut(s)	75, 315, 861
LmnI	GCTCC	3 cut(s)	8, 184, 755
Lsp1109I	GCAGC	3 cut(s)	334, 392, 691
LweI	GCATC	4 cut(s)	189, 359, 379, 392
MaeI	CTAG	5 cut(s)	12, 69, 188, 443, 740
MaeII	ACGT	1 cut(s)	85
MaeIII	GTNAC	3 cut(s)	63, 496, 718
MalI	GATC	3 cut(s)	77, 317, 863
MboI	GATC	3 cut(s)	75, 315, 861
MboII	GAAGA	3 cut(s)	239, 799, 808
MflI	RGATCY	1 cut(s)	75
MluCI	AATT	7 cut(s)	30, 39, 354, 405, 573, 645, 855
MlyI	GAGTC	1 cut(s)	71
MmeI	TCCRAC	1 cut(s)	334
MnlI	CCTC	9 cut(s)	30, 290, 391, 465, 489, 659, 736, 747, 844
MroXI	GAANNNNTTC	1 cut(s)	648
MseI	TTAA	1 cut(s)	662
MslI	CAYNNNNRTG	2 cut(s)	70, 686
MspI	CCGG	1 cut(s)	148
MvnI	CGCG	1 cut(s)	672
MwoI	GCNNNNNNNGC	6 cut(s)	208, 389, 575, 584, 678, 710
NdeI	CATATG	1 cut(s)	589
NdeII	GATC	3 cut(s)	75, 315, 861
NlaIII	CATG	2 cut(s)	637, 750
NlaIV	GGNNCC	2 cut(s)	77, 619
NmuCI	GTSAC	2 cut(s)	63, 718
PaeR7I	CTCGAG	1 cut(s)	848
PagI	TCATGA	1 cut(s)	633
PdmI	GAANNNNTTC	1 cut(s)	648
PfeI	GAWTC	2 cut(s)	173, 372
PflMI	CCANNNNNTGG	1 cut(s)	627
PkrI	GCNGC	3 cut(s)	349, 382, 706
PleI	GAGTC	1 cut(s)	70
PpsI	GAGTC	1 cut(s)	70
Ppu21I	YACGTR	1 cut(s)	86
PspFI	CCCAGC	2 cut(s)	751, 758
PspN4I	GGNNCC	2 cut(s)	77, 619
PspPI	GGNCC	1 cut(s)	617
PstI	CTGCAG	1 cut(s)	370
PstNI	CAGNNNCTG	2 cut(s)	182, 386
PsuI	RGATCY	1 cut(s)	75
RsaI	GTAC	1 cut(s)	160
RsaNI	GTAC	1 cut(s)	159
RseI	CAYNNNNRTG	2 cut(s)	70, 686
SaqAI	TTAA	1 cut(s)	662
SatI	GCNGC	3 cut(s)	348, 381, 705
Sau3AI	GATC	3 cut(s)	75, 315, 861
Sau96I	GGNCC	1 cut(s)	617
SchI	GAGTC	1 cut(s)	71
SfaNI	GCATC	4 cut(s)	189, 359, 379, 392
SfcI	CTRYAG	1 cut(s)	366
Sfr274I	CTCGAG	1 cut(s)	848
SinI	GGWCC	1 cut(s)	617
SlaI	CTCGAG	1 cut(s)	848
SmiMI	CAYNNNNRTG	2 cut(s)	70, 686
SmlI	CTYRAG	1 cut(s)	848
SmoI	CTYRAG	1 cut(s)	848
SpeI	ACTAGT	1 cut(s)	187
Sse9I	AATT	7 cut(s)	30, 39, 354, 405, 573, 645, 855
SsiI	CCGC	2 cut(s)	378, 672
SspMI	CTAG	5 cut(s)	12, 69, 188, 443, 740
StyI	CCWWGG	1 cut(s)	94
TaiI	ACGT	1 cut(s)	88
TaqI	TCGA	1 cut(s)	849
TasI	AATT	7 cut(s)	30, 39, 354, 405, 573, 645, 855
TfiI	GAWTC	2 cut(s)	173, 372
Tru1I	TTAA	1 cut(s)	662
Tru9I	TTAA	1 cut(s)	662
TscAI	CASTG	3 cut(s)	585, 693, 720
TseFI	GTSAC	2 cut(s)	63, 718
TseI	GCWGC	3 cut(s)	347, 380, 704
Tsp45I	GTSAC	2 cut(s)	63, 718
TspDTI	ATGAA	5 cut(s)	134, 231, 717, 799, 808
TspRI	CASTG	3 cut(s)	585, 693, 720
Van91I	CCANNNNNTGG	1 cut(s)	627
VpaK11BI	GGWCC	1 cut(s)	617
XapI	RAATTY	1 cut(s)	645
XbaI	TCTAGA	1 cut(s)	739
XhoI	CTCGAG	1 cut(s)	848
XmnI	GAANNNNTTC	1 cut(s)	648
XspI	CTAG	5 cut(s)	12, 69, 188, 443, 740

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.