Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004614

Physical Location & Seq

Genomic Coordinates Reverse (-)

5587344 .. 5592534

Gene Structure 5191 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G17010.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1512 bp

ATGGCGCTTGATCCTGAGCAGCAGCAACCAATCTCCTCTGTTTCCAGAGAGTTTGGTAAGTCATCTGGTGAGATCAGCCCAGAAAGGGAGCCTCTTATTAAAGAGAATCATGTCCCAGAAAACTACTCTGTCGTTGCCGCCATTCTCCCGTTTTTATTTCCAGCTCTCGGAGGACTGCTTTATGGTTATGAAATTGGTGCAACTTCTTGTGCAACCATTTCACTTCAGTCGCCTTCATTAAGTGGAATTTCATGGTACAACTTGTCCTCAGTGGATGTTGGTCTAGTTACCAGTGGCTCACTTTACGGTGCATTATTTGGCTCAATTGTGGCTTTTACTATCGCTGACGTTATAGGAAGAAGAAAGGAGCTGATTTTGGCTGCATTATTGTATCTCGTTGGAGCCCTTGTGACTGCACTAGCCCCAACCTATTCCGTTCTGATAATTGGACGGGTTATTTATGGGGTCTCAGTTGGACTGGCAATGCATGCGGCTCCGATGTACATTGCAGAGACTGCTCCAAGTCCGATACGTGGACAGCTGGTATCATTAAAGGAATTCTTCATAGTCCTTGGGATGGTTGGAGGTTATGGAATCGGTAGTCTTACAGTCAATGTTCATTCTGGTTGGCGATACATGTATGCAACAAGTGTCCCTTTGGCAGTTATTATGGGAATTGGGATGTGGTGGCTCCCAGCATCCCCTAGGTGGCTTTTGTTGCGCGTCATACAGGGGAAAGGGAATGTGGAGAACCAACGAGAGGCTGCAATCAAATCTCTCTGCTGCCTTAGAGGCCCTGCTTTTGTTGATTCAGCTGCTGAACAAGTAAATGAGATTTTGGCTGAACTAACTTTTGTGGGCGAGGATAAAGAAGTCACATTTGGTGAATTATTTCAAGGGAAGTGCTTGAAAGCTCTCATCATAGGAGGAGGTCTAGTCTTGTTTCAGCAGATAACTGGACAACCAAGTGTGCTTTATTATGCACCATCAATACTGCAGACCGCTGGCTTTTCAGCCGCAGGTGATGCAACAAGGGTCTCAATTCTACTTGGTCTATTGAAGTTGATTATGACAGGAGTAGCTGTTGTAGTTATCGACAGACTTGGAAGGAGACCTTTACTTCTTGGTGGAGTTGGTGGCATGGTTGTTTCATTATTCCTGCTGGGGTCATACTACCTCTTTTTCAGCGCCTCACCAGTTGTTGCTGTAGTTGCACTGCTGCTTTATGTGGGCTGTTACCAGCTATCTTTTGGTCCAATTGGTTGGCTGATGATTTCAGAGATATTTCCCCTTAAACTAAGAGGTCGAGGTCTCAGTCTAGCAGTGCTTGTGAATTTTGGTGCAAACGCACTTGTGACATTTGCGTTTTCACCCCTAAAGGAACTGCTGGGAGCTGGGATACTGTTTTGTGGGTTTGGTGTGATATGTGTATTGTCTCTGGTATTCATATTCTTCATTGTGCCAGAGACAAAGGGTCTCACTCTTGAGGAAATTGAAGCCAAATGTCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005351 GO:0005353 GO:0005355 GO:0005402 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0007275 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009605 GO:0009607 GO:0009624 GO:0009705 GO:0009791 GO:0009845 GO:0009909 GO:0009911 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0015755 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0031090 GO:0032501 GO:0032502 GO:0034219 GO:0034220 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046323 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051094 GO:0051119 GO:0051179 GO:0051234 GO:0051239 GO:0051240 GO:0051704 GO:0051707 GO:0055085 GO:0065007 GO:0071702 GO:0090351 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1902600 GO:1904659 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

503

Amino Acids

53.54

Weight (kDa)

6.36

Isoelectric Point (pI)

41.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	53 - 500	1.7e-98	Sugar (and other) transporter
MFS_1	PF07690	69 - 451	4.5e-28	Major Facilitator Superfamily
MFS_5	PF05631	86 - 164	1e-06	Sugar-tranasporters, 12 TM
MFS_1	PF07690	349 - 492	3.6e-06	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004614)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03090 AT5G17010 AT5G17010 AT5G17010 AT5G17010
fragaria_vesca	FvH4_7g33891 FvH4_7g33900
malus_domestica	MD01G1235500.v1.1 MD07G1308300.v1.1
prunus_persica	Prupe.2G325500_v2.0.a1
pyrus_communis	pycom01g24360 pycom07g28050
rosa_chinensis	RchiOBHm_Chr1g0384101 RchiOBHm_Chr1g0384111
rosa_laevigata	RLG00000026071 RLG00000026072
rosa_multiflora	Rmu_sc0031875.1_g000001
rosa_roxburghii	Rroxscaffold_4G00276980 Rroxscaffold_4G00276990
rosa_rugosa	Rorug01G0444800 Rorug01G0444900
rosa_samantha	Rh1AG470300 Rh1AG470400 Rh1BG427700 Rh1BG427800 Rh1CG440400 Rh1CG440500 Rh1DG460700 Rh1DG460800
rosa_wichuraiana	Rw1G040230 Rw1G040240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1010
Acc36I	ACCTGC	1 cut(s)	1010
AccII	CGCG	1 cut(s)	723
AciI	CCGC	4 cut(s)	138, 491, 1002, 1017
AclWI	GGATC	1 cut(s)	5
AcsI	RAATTY	3 cut(s)	246, 557, 1333
AcuI	CTGAAG	1 cut(s)	209
AfaI	GTAC	2 cut(s)	257, 503
AfiI	CCNNNNNNNGG	6 cut(s)	85, 167, 533, 577, 708, 760
AflIII	ACRYGT	1 cut(s)	636
AgsI	TTSAA	4 cut(s)	896, 910, 1060, 1496
AhdI	GACNNNNNGTC	1 cut(s)	1473
AjuI	GAANNNNNNNTTGG	2 cut(s)	864, 896
AluBI	AGCT	8 cut(s)	164, 370, 541, 815, 914, 1082, 1243, 1394
AluI	AGCT	8 cut(s)	164, 370, 541, 815, 914, 1082, 1243, 1394
Alw26I	GTCTC	8 cut(s)	472, 506, 1042, 1105, 1316, 1440, 1460, 1481
AlwI	GGATC	1 cut(s)	5
AlwNI	CAGNNNCTG	2 cut(s)	515, 818
AoxI	GGCC	1 cut(s)	793
ApeKI	GCWGC	7 cut(s)	19, 22, 380, 764, 783, 815, 1219
ApoI	RAATTY	3 cut(s)	246, 557, 1333
Asp700I	GAANNNNTTC	1 cut(s)	891
AspA2I	CCTAGG	1 cut(s)	704
AspLEI	GCGC	3 cut(s)	7, 723, 1190
AspS9I	GGNCC	2 cut(s)	794, 1253
AsuHPI	GGTGA	5 cut(s)	80, 896, 1034, 1185, 1362
AvaII	GGWCC	1 cut(s)	1253
AvrII	CCTAGG	1 cut(s)	704
BanII	GRGCYC	1 cut(s)	406
BbvI	GCAGC	7 cut(s)	31, 34, 367, 751, 770, 802, 1206
BccI	CCATC	2 cut(s)	571, 994
BciVI	GTATCC	1 cut(s)	1392
BcoDI	GTCTC	8 cut(s)	472, 506, 1042, 1105, 1316, 1440, 1460, 1481
BfaI	CTAG	5 cut(s)	284, 419, 705, 935, 1319
BfmI	CTRYAG	2 cut(s)	995, 1206
BfoI	RGCGCY	2 cut(s)	8, 1191
BfuAI	ACCTGC	1 cut(s)	1010
BfuI	GTATCC	1 cut(s)	1392
BglI	GCCNNNNNGGC	1 cut(s)	792
BlnI	CCTAGG	1 cut(s)	704
Bme18I	GGWCC	1 cut(s)	1253
BmeRI	GACNNNNNGTC	1 cut(s)	1473
BmgT120I	GGNCC	2 cut(s)	794, 1253
BmiI	GGNNCC	4 cut(s)	90, 403, 495, 692
BmsI	GCATC	2 cut(s)	707, 1015
Bpu10I	CCTNAGC	1 cut(s)	15
BpuEI	CTTGAG	1 cut(s)	1505
BsaAI	YACGTR	1 cut(s)	533
BsaI	GGTCTC	5 cut(s)	472, 1042, 1105, 1316, 1481
BsaJI	CCNNGG	2 cut(s)	571, 704
BsaXI	ACNNNNNCTCC	6 cut(s)	393, 423, 921, 951, 1068, 1098
Bsc4I	CCNNNNNNNGG	6 cut(s)	85, 167, 533, 577, 708, 760
Bse1I	ACTGG	4 cut(s)	291, 483, 961, 1196
Bse3DI	GCAATG	2 cut(s)	489, 504
BseDI	CCNNGG	2 cut(s)	571, 704
BseGI	GGATG	4 cut(s)	280, 582, 687, 698
BseLI	CCNNNNNNNGG	6 cut(s)	85, 167, 533, 577, 708, 760
BseMI	GCAATG	2 cut(s)	489, 504
BseMII	CTCAG	4 cut(s)	6, 282, 483, 1327
BseNI	ACTGG	4 cut(s)	291, 483, 961, 1196
BseRI	GAGGAG	2 cut(s)	25, 942
BseXI	GCAGC	7 cut(s)	31, 34, 367, 751, 770, 802, 1206
BseYI	CCCAGC	4 cut(s)	694, 1162, 1387, 1394
BsgI	GTGCAG	1 cut(s)	399
Bsh1236I	CGCG	1 cut(s)	723
BshFI	GGCC	1 cut(s)	795
BslFI	GGGAC	2 cut(s)	98, 638
BslI	CCNNNNNNNGG	6 cut(s)	85, 167, 533, 577, 708, 760
BsmAI	GTCTC	8 cut(s)	472, 506, 1042, 1105, 1316, 1440, 1460, 1481
BsmFI	GGGAC	2 cut(s)	98, 638
BsnI	GGCC	1 cut(s)	795
Bso31I	GGTCTC	5 cut(s)	472, 1042, 1105, 1316, 1481
Bsp1286I	GDGCHC	1 cut(s)	406
Bsp1407I	TGTACA	1 cut(s)	501
Bsp143I	GATC	2 cut(s)	10, 72
BspACI	CCGC	4 cut(s)	138, 491, 1002, 1017
BspANI	GGCC	1 cut(s)	795
BspCNI	CTCAG	4 cut(s)	7, 281, 482, 1326
BspFNI	CGCG	1 cut(s)	723
BspLI	GGNNCC	4 cut(s)	90, 403, 495, 692
BspMAI	CTGCAG	1 cut(s)	999
BspMI	ACCTGC	1 cut(s)	1010
BspPI	GGATC	1 cut(s)	5
BspTNI	GGTCTC	5 cut(s)	472, 1042, 1105, 1316, 1481
BsrDI	GCAATG	2 cut(s)	489, 504
BsrGI	TGTACA	1 cut(s)	501
BsrI	ACTGG	4 cut(s)	291, 483, 961, 1196
BssECI	CCNNGG	2 cut(s)	571, 704
BssMI	GATC	2 cut(s)	10, 72
BssT1I	CCWWGG	2 cut(s)	571, 704
Bst4CI	ACNGT	3 cut(s)	308, 610, 1404
BstAPI	GCANNNNNTGC	3 cut(s)	488, 515, 1025
BstAUI	TGTACA	1 cut(s)	501
BstBAI	YACGTR	1 cut(s)	533
BstC8I	GCNNGC	2 cut(s)	489, 1006
BstDEI	CTNAG	6 cut(s)	15, 268, 469, 788, 1298, 1313
BstF5I	GGATG	4 cut(s)	280, 582, 687, 698
BstFNI	CGCG	1 cut(s)	723
BstH2I	RGCGCY	2 cut(s)	8, 1191
BstHHI	GCGC	3 cut(s)	7, 723, 1190
BstKTI	GATC	2 cut(s)	13, 75
BstMAI	GTCTC	8 cut(s)	472, 506, 1042, 1105, 1316, 1440, 1460, 1481
BstMBI	GATC	2 cut(s)	10, 72
BstMWI	GCNNNNNNNGC	6 cut(s)	488, 515, 718, 792, 1025, 1211
BstNSI	RCATGY	2 cut(s)	491, 640
BstSFI	CTRYAG	2 cut(s)	995, 1206
BstUI	CGCG	1 cut(s)	723
BstV1I	GCAGC	7 cut(s)	31, 34, 367, 751, 770, 802, 1206
BstXI	CCANNNNNNTGG	1 cut(s)	1263
BsuI	GTATCC	1 cut(s)	1392
BsuRI	GGCC	1 cut(s)	795
BtsCI	GGATG	4 cut(s)	280, 582, 687, 698
BtsI	GCAGTG	2 cut(s)	1214, 1329
BtsIMutI	CAGTG	4 cut(s)	276, 298, 1214, 1329
BveI	ACCTGC	1 cut(s)	1010
Cac8I	GCNNGC	2 cut(s)	489, 1006
CaiI	CAGNNNCTG	2 cut(s)	515, 818
CfoI	GCGC	3 cut(s)	7, 723, 1190
Cfr13I	GGNCC	2 cut(s)	794, 1253
CseI	GACGC	1 cut(s)	712
Csp6I	GTAC	2 cut(s)	256, 502
CviAII	CATG	5 cut(s)	110, 252, 488, 637, 1141
CviQI	GTAC	2 cut(s)	256, 502
DdeI	CTNAG	6 cut(s)	15, 268, 469, 788, 1298, 1313
DpnI	GATC	2 cut(s)	12, 74
DpnII	GATC	2 cut(s)	10, 72
DriI	GACNNNNNGTC	1 cut(s)	1473
Eam1105I	GACNNNNNGTC	1 cut(s)	1473
Eco130I	CCWWGG	2 cut(s)	571, 704
Eco24I	GRGCYC	1 cut(s)	406
Eco31I	GGTCTC	5 cut(s)	472, 1042, 1105, 1316, 1481
Eco47I	GGWCC	1 cut(s)	1253
Eco57I	CTGAAG	1 cut(s)	209
EcoO109I	RGGNCCY	1 cut(s)	794
EcoRI	GAATTC	1 cut(s)	557
EcoT14I	CCWWGG	2 cut(s)	571, 704
EcoT22I	ATGCAT	1 cut(s)	489
EcoT38I	GRGCYC	1 cut(s)	406
ErhI	CCWWGG	2 cut(s)	571, 704
FaeI	CATG	5 cut(s)	113, 255, 491, 640, 1144
FalI	AAGNNNNNCTT	6 cut(s)	545, 577, 640, 672, 1099, 1131
FaqI	GGGAC	2 cut(s)	98, 638
FatI	CATG	5 cut(s)	109, 251, 487, 636, 1140
FokI	GGATG	4 cut(s)	287, 589, 685, 694
FriOI	GRGCYC	1 cut(s)	406
FspBI	CTAG	5 cut(s)	284, 419, 705, 935, 1319
GlaI	GCGC	3 cut(s)	6, 722, 1189
GsaI	CCCAGC	4 cut(s)	698, 1166, 1391, 1398
HaeII	RGCGCY	2 cut(s)	8, 1191
HaeIII	GGCC	1 cut(s)	795
HgaI	GACGC	1 cut(s)	712
HhaI	GCGC	3 cut(s)	7, 723, 1190
Hin1II	CATG	5 cut(s)	113, 255, 491, 640, 1144
Hin6I	GCGC	3 cut(s)	5, 721, 1188
HinP1I	GCGC	3 cut(s)	5, 721, 1188
HinfI	GANTC	3 cut(s)	106, 594, 809
HphI	GGTGA	5 cut(s)	80, 896, 1034, 1185, 1362
Hpy166II	GTNNAC	1 cut(s)	536
Hpy188I	TCNGA	5 cut(s)	170, 441, 498, 528, 1279
Hpy188III	TCNNGA	3 cut(s)	14, 45, 1484
Hpy8I	GTNNAC	1 cut(s)	536
HpyAV	CCTTC	2 cut(s)	243, 1101
HpyCH4III	ACNGT	3 cut(s)	308, 610, 1404
HpyCH4IV	ACGT	2 cut(s)	348, 532
HpyF10VI	GCNNNNNNNGC	6 cut(s)	488, 515, 718, 792, 1025, 1211
HpyF3I	CTNAG	6 cut(s)	15, 268, 469, 788, 1298, 1313
HpySE526I	ACGT	2 cut(s)	348, 532
Hsp92II	CATG	5 cut(s)	113, 255, 491, 640, 1144
HspAI	GCGC	3 cut(s)	5, 721, 1188
Kzo9I	GATC	2 cut(s)	10, 72
LmnI	GCTCC	7 cut(s)	88, 367, 401, 499, 523, 696, 1391
Lsp1109I	GCAGC	7 cut(s)	31, 34, 367, 751, 770, 802, 1206
LweI	GCATC	2 cut(s)	707, 1015
MaeI	CTAG	5 cut(s)	284, 419, 705, 935, 1319
MaeII	ACGT	2 cut(s)	348, 532
MaeIII	GTNAC	5 cut(s)	286, 409, 874, 1235, 1354
MalI	GATC	2 cut(s)	12, 74
MboI	GATC	2 cut(s)	10, 72
MboII	GAAGA	4 cut(s)	369, 372, 553, 1444
MfeI	CAATTG	2 cut(s)	324, 1257
MhlI	GDGCHC	1 cut(s)	406
MmeI	TCCRAC	3 cut(s)	379, 454, 562
Mph1103I	ATGCAT	1 cut(s)	489
MroXI	GAANNNNTTC	1 cut(s)	891
MseI	TTAA	4 cut(s)	99, 239, 551, 1293
MspA1I	CMGCKG	3 cut(s)	541, 815, 1004
MunI	CAATTG	2 cut(s)	324, 1257
MvnI	CGCG	1 cut(s)	723
MwoI	GCNNNNNNNGC	6 cut(s)	488, 515, 718, 792, 1025, 1211
NdeII	GATC	2 cut(s)	10, 72
NlaIII	CATG	5 cut(s)	113, 255, 491, 640, 1144
NlaIV	GGNNCC	4 cut(s)	90, 403, 495, 692
NmuCI	GTSAC	3 cut(s)	409, 874, 1354
NsiI	ATGCAT	1 cut(s)	489
NspI	RCATGY	2 cut(s)	491, 640
PaeI	GCATGC	1 cut(s)	491
PaqCI	CACCTGC	1 cut(s)	1010
PciI	ACATGT	1 cut(s)	636
PdmI	GAANNNNTTC	1 cut(s)	891
PfeI	GAWTC	3 cut(s)	106, 594, 809
Ppu21I	YACGTR	1 cut(s)	533
PscI	ACATGT	1 cut(s)	636
PspFI	CCCAGC	4 cut(s)	694, 1162, 1387, 1394
PspN4I	GGNNCC	4 cut(s)	90, 403, 495, 692
PspPI	GGNCC	2 cut(s)	794, 1253
PstI	CTGCAG	1 cut(s)	999
PstNI	CAGNNNCTG	2 cut(s)	515, 818
PvuII	CAGCTG	2 cut(s)	541, 815
RsaI	GTAC	2 cut(s)	257, 503
RsaNI	GTAC	2 cut(s)	256, 502
SaqAI	TTAA	4 cut(s)	99, 239, 551, 1293
Sau3AI	GATC	2 cut(s)	10, 72
Sau96I	GGNCC	2 cut(s)	794, 1253
SduI	GDGCHC	1 cut(s)	406
SfaNI	GCATC	2 cut(s)	707, 1015
SfcI	CTRYAG	2 cut(s)	995, 1206
SinI	GGWCC	1 cut(s)	1253
SmlI	CTYRAG	1 cut(s)	1484
SmoI	CTYRAG	1 cut(s)	1484
SphI	GCATGC	1 cut(s)	491
SsiI	CCGC	4 cut(s)	138, 491, 1002, 1017
SspMI	CTAG	5 cut(s)	284, 419, 705, 935, 1319
StyI	CCWWGG	2 cut(s)	571, 704
TaaI	ACNGT	3 cut(s)	308, 610, 1404
TaiI	ACGT	2 cut(s)	351, 535
TaqI	TCGA	2 cut(s)	1095, 1306
TatI	WGTACW	1 cut(s)	501
TauI	GCSGC	3 cut(s)	140, 494, 1019
TfiI	GAWTC	3 cut(s)	106, 594, 809
Tru1I	TTAA	4 cut(s)	99, 239, 551, 1293
Tru9I	TTAA	4 cut(s)	99, 239, 551, 1293
TscAI	CASTG	4 cut(s)	276, 298, 1221, 1329
TseFI	GTSAC	3 cut(s)	409, 874, 1354
TseI	GCWGC	7 cut(s)	19, 22, 380, 764, 783, 815, 1219
Tsp45I	GTSAC	3 cut(s)	409, 874, 1354
TspDTI	ATGAA	8 cut(s)	204, 225, 240, 553, 608, 1140, 1435, 1444
TspGWI	ACGGA	1 cut(s)	424
TspRI	CASTG	4 cut(s)	276, 298, 1221, 1329
VpaK11BI	GGWCC	1 cut(s)	1253
XapI	RAATTY	3 cut(s)	246, 557, 1333
XceI	RCATGY	2 cut(s)	491, 640
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1247
XmaJI	CCTAGG	1 cut(s)	704
XmnI	GAANNNNTTC	1 cut(s)	891
XspI	CTAG	5 cut(s)	284, 419, 705, 935, 1319
Zsp2I	ATGCAT	1 cut(s)	489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.