AT3G03440

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0012800
Physical Location & Seq
Forward (+)
815550 .. 818876
3327 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G03440.1

Sequence Viewer

Length: 1227 bp
ATGGACCTCGCCGGAGAAACAAACAGCCTTATCTCCACCGTCGCTTCTTCTTCTTCCTGTTCTTCCTCCGTGTCGTCAATCGACACAAGCCTCGATTGCGATTCGCCACGTGGCGGAGATGTAGACCACGAATTGCTCCACACGGCGGTTTCGGTTTCTTCGTCGGTGTCGGTTTCTTCGTCTTCTTCTGCTTCAATCCAGAGAGTTCTGAGCTTAATCCGATCGGAGGATTGCGATTCGAGGCTGTTTGCTGCTAAAGAGATCCGTCGGCTGACAAAGACGTCTCATAGGTGCCGCCGACACTTTTCCCAAGCCGTGGAACCTCTCGTTTCTATGCTCCGATTTGATTCGCCTGAATCTCACCACGAGGCTGCTTTACTCGCTCTCCTTAACCTCGCCGTCAAAGACGAAAAGAATAAAGTGAGTATAATTGAAGCCGGTGCTTTAGAGCCAATCATCAACTTCTTACAATCAAATAGCCCAACACTTCAAGAGTATGCTTCTGCATCTTTGCTCACTCTCTCCGCGTCAGCAAACAACAAACCCATCATTGGAGCTAATGGTGTGGTTCCTTTATTAGTCAAGGTCATTAAACATGGAAGCCCACAAGCTAAAGCTGATGCAGTAATGGCTCTTTCCAACCTCTCTACACTCCCCGATAACCTAAGCATGATCCTAGCAACTAAACCACTCTCACCAATACTGAATCTTCTCAAATCAAGTAAAAAGTCGTCGAAAACATCTGAGAAATGTTGTTCACTAATAGAGGCCTTGATGGTTTCTGGTGAGGAGGCGAGAACAGGGTTAGTTTCTGATGAAGGAGGAGTTTTAGCGGTCGTGGAAGTTCTTGAAAACGGGTCATTACAAGCTCGGGAACATGCCGTTGGCGTGCTTTTAACGCTCTGCCAAAGCGATAGGAGTAAATACAGAGAGCCAATTCTTAGAGAAGGTGTAATACCGGGACTGCTTGAGCTCACGGTTCAGGGGACATCGAAATCTCGGATTAAAGCTCAAAGACTTCTCTGTTTACTAAGGAACTCGGAAAGTCCGAGATCAGAGGTCCAACCCGATACAATAGAAAACATAGTGTCAAGCTTAATCTCTCATATAGACGGAGATGATCAATCCGGTAAGGCAAAGAAGATGCTAGCTGAAATGGTCCAAGTTAGCATGGAAAAAAGCTTGAGACATCTACAAGAACGTGCCTCGACTCTTGTTCGTCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arm

Protein Analysis

408

Amino Acids

43.68

Weight (kDa)

6.57

Isoelectric Point (pI)

55.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARM_PUB PF25598 46 - 218 2.1e-08 Plant U-box protein ARM repeat region
ARM_ARMC5 PF24768 65 - 216 1.3e-09 ARMC5
ARM_ARMC5 PF24768 206 - 356 2.2e-07 ARMC5
ARM_PUB PF25598 212 - 349 2.5e-06 Plant U-box protein ARM repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012800)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03440
fragaria_vesca FvH4_1g29130
malus_domestica MD09G1261900.v1.1 MD17G1256900.v1.1
prunus_persica Prupe.3G159600_v2.0.a1
pyrus_communis pycom09g17620 pycom17g25920
rosa_chinensis RchiOBHm_Chr3g0493501 RchiOBHm_Chr3g0493511
rosa_laevigata RLG00000022710
rosa_multiflora Rmu_co8033802.1_g000001
rosa_roxburghii Rroxscaffold_6G00391540
rosa_rugosa Rorug03G0261600
rosa_samantha Rh3AG310500 Rh3BG346700 Rh3CG344500 Rh3DG345800
rosa_wichuraiana Rw3G027290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 280
AatII GACGTC 1 cut(s) 284
AccB1I GGYRCC 1 cut(s) 291
AccB7I CCANNNNNTGG 1 cut(s) 316
AccI GTMKAC 1 cut(s) 123
AccII CGCG 1 cut(s) 527
AciI CCGC 5 cut(s) 114, 146, 295, 525, 833
AclWI GGATC 2 cut(s) 256, 667
AcvI CACGTG 1 cut(s) 110
AcyI GRCGYC 1 cut(s) 281
AfiI CCNNNNNNNGG 5 cut(s) 113, 145, 226, 316, 551
AgsI TTSAA 4 cut(s) 195, 434, 491, 851
AjuI GAANNNNNNNTTGG 2 cut(s) 867, 899
Alw21I GWGCWC 1 cut(s) 975
Alw26I GTCTC 2 cut(s) 288, 1180
AlwI GGATC 2 cut(s) 256, 667
Ama87I CYCGRG 1 cut(s) 870
AoxI GGCC 1 cut(s) 768
ApeKI GCWGC 2 cut(s) 251, 371
AspS9I GGNCC 3 cut(s) 4, 1060, 1159
AsuC2I CCSGG 1 cut(s) 960
AsuHPI GGTGA 3 cut(s) 353, 687, 797
AsuNHI GCTAGC 1 cut(s) 1147
AvaI CYCGRG 1 cut(s) 870
AvaII GGWCC 3 cut(s) 4, 1060, 1159
BanI GGYRCC 1 cut(s) 291
BanII GRGCYC 1 cut(s) 975
BarI GAAGNNNNNNTAC 2 cut(s) 939, 971
BauI CACGAG 1 cut(s) 365
BbrPI CACGTG 1 cut(s) 110
BbsI GAAGAC 1 cut(s) 174
Bbv12I GWGCWC 1 cut(s) 975
BbvI GCAGC 2 cut(s) 238, 358
BccI CCATC 2 cut(s) 554, 769
BceAI ACGGC 4 cut(s) 159, 299, 383, 866
BclI TGATCA 1 cut(s) 1120
BcnI CCSGG 1 cut(s) 960
BcoDI GTCTC 2 cut(s) 288, 1180
BfaI CTAG 2 cut(s) 677, 1148
BisI GCNGC 3 cut(s) 252, 295, 372
BlsI GCNGC 3 cut(s) 253, 296, 373
Bme1390I CCNGG 1 cut(s) 960
Bme18I GGWCC 3 cut(s) 4, 1060, 1159
BmeT110I CYCGRG 1 cut(s) 870
BmgT120I GGNCC 3 cut(s) 4, 1060, 1159
BmiI GGNNCC 3 cut(s) 293, 321, 570
BmrFI CCNGG 1 cut(s) 960
BmsI GCATC 3 cut(s) 515, 610, 1134
BmtI GCTAGC 1 cut(s) 1151
BpiI GAAGAC 1 cut(s) 174
Bpu10I CCTNAGC 1 cut(s) 665
BpuEI CTTGAG 2 cut(s) 989, 1204
BpuMI CCSGG 1 cut(s) 960
BsaAI YACGTR 1 cut(s) 110
BsaHI GRCGYC 1 cut(s) 281
BsaJI CCNNGG 1 cut(s) 315
BsaWI WCCGGW 1 cut(s) 1127
BsaXI ACNNNNNCTCC 2 cut(s) 369, 399
Bsc4I CCNNNNNNNGG 5 cut(s) 113, 145, 226, 316, 551
Bse118I RCCGGY 1 cut(s) 437
BseDI CCNNGG 1 cut(s) 315
BseLI CCNNNNNNNGG 5 cut(s) 113, 145, 226, 316, 551
BseMII CTCAG 2 cut(s) 200, 735
BseRI GAGGAG 2 cut(s) 803, 837
BseXI GCAGC 2 cut(s) 238, 358
Bsh1236I CGCG 1 cut(s) 527
Bsh1285I CGRYCG 2 cut(s) 224, 837
BshFI GGCC 1 cut(s) 770
BshNI GGYRCC 1 cut(s) 291
BsiEI CGRYCG 2 cut(s) 224, 837
BsiHKAI GWGCWC 1 cut(s) 975
BsiHKCI CYCGRG 1 cut(s) 870
BsiSI CCGG 4 cut(s) 12, 438, 959, 1128
BslFI GGGAC 2 cut(s) 975, 1000
BslI CCNNNNNNNGG 5 cut(s) 113, 145, 226, 316, 551
BsmAI GTCTC 2 cut(s) 288, 1180
BsmBI CGTCTC 1 cut(s) 288
BsmFI GGGAC 2 cut(s) 975, 1000
BsnI GGCC 1 cut(s) 770
BsoBI CYCGRG 1 cut(s) 870
Bsp1286I GDGCHC 1 cut(s) 975
Bsp143I GATC 5 cut(s) 221, 261, 672, 1052, 1120
BspACI CCGC 5 cut(s) 114, 146, 295, 525, 833
BspANI GGCC 1 cut(s) 770
BspCNI CTCAG 2 cut(s) 201, 736
BspFNI CGCG 1 cut(s) 527
BspLI GGNNCC 3 cut(s) 293, 321, 570
BspOI GCTAGC 1 cut(s) 1151
BspPI GGATC 2 cut(s) 256, 667
BspT107I GGYRCC 1 cut(s) 291
BsrFI RCCGGY 1 cut(s) 437
BssAI RCCGGY 1 cut(s) 437
BssECI CCNNGG 1 cut(s) 315
BssMI GATC 5 cut(s) 221, 261, 672, 1052, 1120
BssNI GRCGYC 1 cut(s) 281
BssSI CACGAG 1 cut(s) 365
Bst2BI CACGAG 1 cut(s) 365
Bst4CI ACNGT 2 cut(s) 40, 979
BstACI GRCGYC 1 cut(s) 281
BstBAI YACGTR 1 cut(s) 110
BstC8I GCNNGC 2 cut(s) 890, 1149
BstDEI CTNAG 5 cut(s) 209, 665, 744, 941, 1031
BstDSI CCRYGG 1 cut(s) 315
BstFNI CGCG 1 cut(s) 527
BstKTI GATC 5 cut(s) 224, 264, 675, 1055, 1123
BstMAI GTCTC 2 cut(s) 288, 1180
BstMBI GATC 5 cut(s) 221, 261, 672, 1052, 1120
BstMCI CGRYCG 2 cut(s) 224, 837
BstMWI GCNNNNNNNGC 4 cut(s) 96, 380, 629, 898
BstNSI RCATGY 1 cut(s) 881
BstSCI CCNGG 1 cut(s) 958
BstUI CGCG 1 cut(s) 527
BstV1I GCAGC 2 cut(s) 238, 358
BstV2I GAAGAC 1 cut(s) 174
BstX2I RGATCY 1 cut(s) 261
BstYI RGATCY 1 cut(s) 261
BsuRI GGCC 1 cut(s) 770
BtgI CCRYGG 1 cut(s) 315
Cac8I GCNNGC 2 cut(s) 890, 1149
Cfr10I RCCGGY 1 cut(s) 437
Cfr13I GGNCC 3 cut(s) 4, 1060, 1159
CseI GACGC 1 cut(s) 516
CviAII CATG 4 cut(s) 596, 670, 878, 1171
DdeI CTNAG 5 cut(s) 209, 665, 744, 941, 1031
DpnI GATC 5 cut(s) 223, 263, 674, 1054, 1122
DpnII GATC 5 cut(s) 221, 261, 672, 1052, 1120
DrdI GACNNNNNNGTC 1 cut(s) 280
DseDI GACNNNNNNGTC 1 cut(s) 280
EciI GGCGGA 1 cut(s) 129
Ecl136II GAGCTC 1 cut(s) 973
Eco147I AGGCCT 1 cut(s) 770
Eco24I GRGCYC 1 cut(s) 975
Eco47I GGWCC 3 cut(s) 4, 1060, 1159
Eco53kI GAGCTC 1 cut(s) 973
Eco72I CACGTG 1 cut(s) 110
Eco88I CYCGRG 1 cut(s) 870
EcoICRI GAGCTC 1 cut(s) 973
EcoT38I GRGCYC 1 cut(s) 975
Esp3I CGTCTC 1 cut(s) 288
FaeI CATG 4 cut(s) 599, 673, 881, 1174
FaqI GGGAC 2 cut(s) 975, 1000
FatI CATG 4 cut(s) 595, 669, 877, 1170
FbaI TGATCA 1 cut(s) 1120
FblI GTMKAC 1 cut(s) 123
Fnu4HI GCNGC 3 cut(s) 252, 295, 372
FriOI GRGCYC 1 cut(s) 975
Fsp4HI GCNGC 3 cut(s) 252, 295, 372
FspBI CTAG 2 cut(s) 677, 1148
GluI GCNGC 3 cut(s) 252, 295, 372
HaeIII GGCC 1 cut(s) 770
HapII CCGG 4 cut(s) 12, 438, 959, 1128
HgaI GACGC 1 cut(s) 516
Hin1I GRCGYC 1 cut(s) 281
Hin1II CATG 4 cut(s) 599, 673, 881, 1174
HindIII AAGCTT 2 cut(s) 1093, 1180
HinfI GANTC 6 cut(s) 101, 236, 347, 356, 706, 1210
HpaII CCGG 4 cut(s) 12, 438, 959, 1128
HphI GGTGA 3 cut(s) 353, 687, 797
Hpy166II GTNNAC 3 cut(s) 124, 758, 1028
Hpy188III TCNNGA 4 cut(s) 199, 491, 848, 872
Hpy8I GTNNAC 3 cut(s) 124, 758, 1028
Hpy99I CGWCG 4 cut(s) 44, 166, 270, 736
HpyAV CCTTC 2 cut(s) 812, 941
HpyCH4III ACNGT 2 cut(s) 40, 979
HpyCH4IV ACGT 3 cut(s) 109, 281, 1201
HpyCH4V TGCA 2 cut(s) 506, 623
HpyF10VI GCNNNNNNNGC 4 cut(s) 96, 380, 629, 898
HpyF3I CTNAG 5 cut(s) 209, 665, 744, 941, 1031
HpySE526I ACGT 3 cut(s) 109, 281, 1201
Hsp92I GRCGYC 1 cut(s) 281
Hsp92II CATG 4 cut(s) 599, 673, 881, 1174
Ksp22I TGATCA 1 cut(s) 1120
Kzo9I GATC 5 cut(s) 221, 261, 672, 1052, 1120
LmnI GCTCC 3 cut(s) 141, 342, 554
Lsp1109I GCAGC 2 cut(s) 238, 358
LweI GCATC 3 cut(s) 515, 610, 1134
MaeI CTAG 2 cut(s) 677, 1148
MaeII ACGT 3 cut(s) 109, 281, 1201
MalI GATC 5 cut(s) 223, 263, 674, 1054, 1122
MboI GATC 5 cut(s) 221, 261, 672, 1052, 1120
MflI RGATCY 1 cut(s) 261
MhlI GDGCHC 1 cut(s) 975
MluCI AATT 3 cut(s) 131, 429, 936
MlyI GAGTC 1 cut(s) 1204
MmeI TCCRAC 2 cut(s) 663, 1087
MseI TTAA 6 cut(s) 215, 390, 591, 896, 1005, 1097
MspI CCGG 4 cut(s) 12, 438, 959, 1128
MspR9I CCNGG 1 cut(s) 960
MvnI CGCG 1 cut(s) 527
MwoI GCNNNNNNNGC 4 cut(s) 96, 380, 629, 898
NciI CCSGG 1 cut(s) 960
NdeII GATC 5 cut(s) 221, 261, 672, 1052, 1120
NheI GCTAGC 1 cut(s) 1147
NlaIII CATG 4 cut(s) 599, 673, 881, 1174
NlaIV GGNNCC 3 cut(s) 293, 321, 570
NspI RCATGY 1 cut(s) 881
PceI AGGCCT 1 cut(s) 770
PcsI WCGNNNNNNNCGW 3 cut(s) 158, 176, 1046
PfeI GAWTC 5 cut(s) 101, 236, 347, 356, 706
PflMI CCANNNNNTGG 1 cut(s) 316
PkrI GCNGC 3 cut(s) 253, 296, 373
Ple19I CGATCG 1 cut(s) 224
PleI GAGTC 1 cut(s) 1204
PmaCI CACGTG 1 cut(s) 110
PmlI CACGTG 1 cut(s) 110
PpsI GAGTC 1 cut(s) 1204
Ppu21I YACGTR 1 cut(s) 110
Psp124BI GAGCTC 1 cut(s) 975
PspCI CACGTG 1 cut(s) 110
PspN4I GGNNCC 3 cut(s) 293, 321, 570
PspPI GGNCC 3 cut(s) 4, 1060, 1159
PsuI RGATCY 1 cut(s) 261
PvuI CGATCG 1 cut(s) 224
SacI GAGCTC 1 cut(s) 975
SaqAI TTAA 6 cut(s) 215, 390, 591, 896, 1005, 1097
SatI GCNGC 3 cut(s) 252, 295, 372
Sau3AI GATC 5 cut(s) 221, 261, 672, 1052, 1120
Sau96I GGNCC 3 cut(s) 4, 1060, 1159
SchI GAGTC 1 cut(s) 1204
ScrFI CCNGG 1 cut(s) 960
SduI GDGCHC 1 cut(s) 975
SfaNI GCATC 3 cut(s) 515, 610, 1134
SinI GGWCC 3 cut(s) 4, 1060, 1159
SmlI CTYRAG 2 cut(s) 968, 1183
SmoI CTYRAG 2 cut(s) 968, 1183
Sse9I AATT 3 cut(s) 131, 429, 936
SseBI AGGCCT 1 cut(s) 770
SsiI CCGC 5 cut(s) 114, 146, 295, 525, 833
SspMI CTAG 2 cut(s) 677, 1148
SstI GAGCTC 1 cut(s) 975
StuI AGGCCT 1 cut(s) 770
StyD4I CCNGG 1 cut(s) 958
TaaI ACNGT 2 cut(s) 40, 979
TaiI ACGT 3 cut(s) 112, 284, 1204
TaqI TCGA 6 cut(s) 81, 93, 239, 734, 992, 1208
TasI AATT 3 cut(s) 131, 429, 936
TauI GCSGC 1 cut(s) 297
TfiI GAWTC 5 cut(s) 101, 236, 347, 356, 706
Tru1I TTAA 6 cut(s) 215, 390, 591, 896, 1005, 1097
Tru9I TTAA 6 cut(s) 215, 390, 591, 896, 1005, 1097
TseI GCWGC 2 cut(s) 251, 371
TspDTI ATGAA 1 cut(s) 831
TspGWI ACGGA 3 cut(s) 58, 254, 1128
Van91I CCANNNNNTGG 1 cut(s) 316
VpaK11BI GGWCC 3 cut(s) 4, 1060, 1159
XceI RCATGY 1 cut(s) 881
XmiI GTMKAC 1 cut(s) 123
XspI CTAG 2 cut(s) 677, 1148
ZraI GACGTC 1 cut(s) 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.