Rw3G027290

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0012800
Physical Location & Seq
Forward (+)
38461481 .. 38465102
3622 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G027290.1

Sequence Viewer

Length: 516 bp
ATGCTGTGCTCTATAGAATCTTTAGTGGGCTTTGATGAGGGTAGAACTGCCTTGACATCCGAAGAAGGTGGAGTGCTTGCAGTTATTGAGGTGCTTGAAAGTGGATCACTTCAAAGTCGAGAGCATGCTGTTGGTGCTCTACTAACAATGTGTCAAAGTGACAGATGCAAATATAGAGAAGCACTTCTTAAAGAAGGGGTAATCCCTGGACTTCTTGAGCTCACTGTTCAAGGAACAGCCAAGTCTCAGTCAAAAGCACAGACACTTTTGCGATTACTGAGGGAGTCCCCATACCCACGATCTGAGCTTGAACCGGACACACTCGAGAATATTGTGTCCAACATTATCTCTCAGATTGATGGTGAGGATCAGTCAGGCAAAGCAAAGAAGATGCTAGCTGAGATGGTTCAAGTTAGCATGGAACAGAGCTTGAGACATTTACAGCAAAGGGCTTTGGTATGCACACCAACTGATCTCCCTATCAATAGTTGTACCTCTGAGGTTTCTTTAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arm

Protein Analysis

171

Amino Acids

18.65

Weight (kDa)

4.93

Isoelectric Point (pI)

64.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012800)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03440
fragaria_vesca FvH4_1g29130
malus_domestica MD09G1261900.v1.1 MD17G1256900.v1.1
prunus_persica Prupe.3G159600_v2.0.a1
pyrus_communis pycom09g17620 pycom17g25920
rosa_chinensis RchiOBHm_Chr3g0493501 RchiOBHm_Chr3g0493511
rosa_laevigata RLG00000022710
rosa_multiflora Rmu_co8033802.1_g000001
rosa_roxburghii Rroxscaffold_6G00391540
rosa_rugosa Rorug03G0261600
rosa_samantha Rh3AG310500 Rh3BG346700 Rh3CG344500 Rh3DG345800
rosa_wichuraiana Rw3G027290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 112, 375
AfaI GTAC 1 cut(s) 493
AgsI TTSAA 5 cut(s) 98, 113, 230, 311, 410
AjnI CCWGG 1 cut(s) 205
AluBI AGCT 4 cut(s) 220, 307, 398, 429
AluI AGCT 4 cut(s) 220, 307, 398, 429
Alw21I GWGCWC 3 cut(s) 11, 139, 222
Alw26I GTCTC 2 cut(s) 249, 427
AlwI GGATC 2 cut(s) 112, 375
Ama87I CYCGRG 1 cut(s) 323
Asp700I GAANNNNTTC 1 cut(s) 183
AsuHPI GGTGA 1 cut(s) 374
AsuNHI GCTAGC 1 cut(s) 394
AvaI CYCGRG 1 cut(s) 323
BanII GRGCYC 1 cut(s) 222
Bbv12I GWGCWC 3 cut(s) 11, 139, 222
BccI CCATC 2 cut(s) 353, 397
BciT130I CCWGG 1 cut(s) 207
BcoDI GTCTC 2 cut(s) 249, 427
BfaI CTAG 1 cut(s) 395
BfmI CTRYAG 1 cut(s) 12
Bme1390I CCNGG 1 cut(s) 207
BmeT110I CYCGRG 1 cut(s) 323
BmrFI CCNGG 1 cut(s) 207
BmsI GCATC 2 cut(s) 155, 381
BmtI GCTAGC 1 cut(s) 398
BpuEI CTTGAG 2 cut(s) 236, 451
BsaJI CCNNGG 1 cut(s) 205
BsaWI WCCGGW 1 cut(s) 313
BseBI CCWGG 1 cut(s) 207
BseDI CCNNGG 1 cut(s) 205
BseGI GGATG 1 cut(s) 56
BseMII CTCAG 6 cut(s) 260, 269, 294, 365, 390, 489
BsiHKAI GWGCWC 3 cut(s) 11, 139, 222
BsiHKCI CYCGRG 1 cut(s) 323
BsiSI CCGG 1 cut(s) 314
BslFI GGGAC 1 cut(s) 271
BsmAI GTCTC 2 cut(s) 249, 427
BsmFI GGGAC 1 cut(s) 271
BsoBI CYCGRG 1 cut(s) 323
Bsp1286I GDGCHC 3 cut(s) 11, 139, 222
Bsp143I GATC 4 cut(s) 104, 299, 367, 472
BspCNI CTCAG 6 cut(s) 259, 270, 295, 364, 391, 490
BspOI GCTAGC 1 cut(s) 398
BspPI GGATC 2 cut(s) 112, 375
BssECI CCNNGG 1 cut(s) 205
BssMI GATC 4 cut(s) 104, 299, 367, 472
Bst2UI CCWGG 1 cut(s) 207
Bst4CI ACNGT 1 cut(s) 226
BstC8I GCNNGC 3 cut(s) 78, 126, 396
BstDEI CTNAG 6 cut(s) 246, 278, 303, 351, 399, 498
BstF5I GGATG 1 cut(s) 56
BstKTI GATC 4 cut(s) 107, 302, 370, 475
BstMAI GTCTC 2 cut(s) 249, 427
BstMBI GATC 4 cut(s) 104, 299, 367, 472
BstMWI GCNNNNNNNGC 1 cut(s) 134
BstNI CCWGG 1 cut(s) 207
BstNSI RCATGY 1 cut(s) 128
BstSCI CCNGG 1 cut(s) 205
BstSFI CTRYAG 1 cut(s) 12
BtsCI GGATG 1 cut(s) 56
BtsIMutI CAGTG 1 cut(s) 222
Cac8I GCNNGC 3 cut(s) 78, 126, 396
Csp6I GTAC 1 cut(s) 492
CviAII CATG 2 cut(s) 125, 418
CviJI RGCY 7 cut(s) 30, 220, 239, 307, 398, 429, 452
CviKI_1 RGCY 7 cut(s) 30, 220, 239, 307, 398, 429, 452
CviQI GTAC 1 cut(s) 492
DdeI CTNAG 6 cut(s) 246, 278, 303, 351, 399, 498
DpnI GATC 4 cut(s) 106, 301, 369, 474
DpnII GATC 4 cut(s) 104, 299, 367, 472
DraI TTTAAA 1 cut(s) 510
Ecl136II GAGCTC 1 cut(s) 220
Eco24I GRGCYC 1 cut(s) 222
Eco53kI GAGCTC 1 cut(s) 220
Eco88I CYCGRG 1 cut(s) 323
EcoICRI GAGCTC 1 cut(s) 220
EcoRII CCWGG 1 cut(s) 205
EcoT38I GRGCYC 1 cut(s) 222
FaeI CATG 2 cut(s) 128, 421
FaiI YATR 6 cut(s) 14, 126, 174, 292, 419, 460
FalI AAGNNNNNCTT 2 cut(s) 171, 203
FaqI GGGAC 1 cut(s) 271
FatI CATG 2 cut(s) 124, 417
FokI GGATG 1 cut(s) 43
FriOI GRGCYC 1 cut(s) 222
FspBI CTAG 1 cut(s) 395
HapII CCGG 1 cut(s) 314
Hin1II CATG 2 cut(s) 128, 421
HinfI GANTC 2 cut(s) 17, 284
HpaII CCGG 1 cut(s) 314
HphI GGTGA 1 cut(s) 374
Hpy188I TCNGA 4 cut(s) 61, 304, 354, 499
Hpy188III TCNNGA 3 cut(s) 119, 215, 325
HpyAV CCTTC 2 cut(s) 59, 188
HpyCH4III ACNGT 1 cut(s) 226
HpyCH4V TGCA 3 cut(s) 80, 168, 462
HpyF10VI GCNNNNNNNGC 1 cut(s) 134
HpyF3I CTNAG 6 cut(s) 246, 278, 303, 351, 399, 498
Hsp92II CATG 2 cut(s) 128, 421
Kzo9I GATC 4 cut(s) 104, 299, 367, 472
LpnPI CCDG 4 cut(s) 192, 219, 327, 360
LweI GCATC 2 cut(s) 155, 381
MaeI CTAG 1 cut(s) 395
MaeIII GTNAC 1 cut(s) 158
MalI GATC 4 cut(s) 106, 301, 369, 474
MboI GATC 4 cut(s) 104, 299, 367, 472
MboII GAAGA 2 cut(s) 74, 400
MhlI GDGCHC 3 cut(s) 11, 139, 222
MlyI GAGTC 1 cut(s) 293
MmeI TCCRAC 1 cut(s) 363
MnlI CCTC 6 cut(s) 31, 82, 273, 358, 493, 505
MroXI GAANNNNTTC 1 cut(s) 183
MseI TTAA 2 cut(s) 189, 509
MspI CCGG 1 cut(s) 314
MspR9I CCNGG 1 cut(s) 207
MvaI CCWGG 1 cut(s) 207
MwoI GCNNNNNNNGC 1 cut(s) 134
NdeII GATC 4 cut(s) 104, 299, 367, 472
NheI GCTAGC 1 cut(s) 394
NlaIII CATG 2 cut(s) 128, 421
NmuCI GTSAC 1 cut(s) 158
NspI RCATGY 1 cut(s) 128
PaeI GCATGC 1 cut(s) 128
PaeR7I CTCGAG 1 cut(s) 323
PdmI GAANNNNTTC 1 cut(s) 183
PfeI GAWTC 1 cut(s) 17
PleI GAGTC 1 cut(s) 292
PpsI GAGTC 1 cut(s) 292
Psp124BI GAGCTC 1 cut(s) 222
Psp6I CCWGG 1 cut(s) 205
PspGI CCWGG 1 cut(s) 205
RsaI GTAC 1 cut(s) 493
RsaNI GTAC 1 cut(s) 492
SacI GAGCTC 1 cut(s) 222
SaqAI TTAA 2 cut(s) 189, 509
Sau3AI GATC 4 cut(s) 104, 299, 367, 472
SchI GAGTC 1 cut(s) 293
ScrFI CCNGG 1 cut(s) 207
SduI GDGCHC 3 cut(s) 11, 139, 222
SetI ASST 8 cut(s) 70, 93, 222, 309, 400, 431, 497, 504
SfaNI GCATC 2 cut(s) 155, 381
SfcI CTRYAG 1 cut(s) 12
Sfr274I CTCGAG 1 cut(s) 323
SlaI CTCGAG 1 cut(s) 323
SmlI CTYRAG 3 cut(s) 215, 323, 430
SmoI CTYRAG 3 cut(s) 215, 323, 430
SphI GCATGC 1 cut(s) 128
SspI AATATT 1 cut(s) 331
SspMI CTAG 1 cut(s) 395
SstI GAGCTC 1 cut(s) 222
StyD4I CCNGG 1 cut(s) 205
TaaI ACNGT 1 cut(s) 226
TaqI TCGA 2 cut(s) 118, 324
TfiI GAWTC 1 cut(s) 17
Tru1I TTAA 2 cut(s) 189, 509
Tru9I TTAA 2 cut(s) 189, 509
TscAI CASTG 1 cut(s) 229
TseFI GTSAC 1 cut(s) 158
Tsp45I GTSAC 1 cut(s) 158
TspRI CASTG 1 cut(s) 229
XceI RCATGY 1 cut(s) 128
XhoI CTCGAG 1 cut(s) 323
XmnI GAANNNNTTC 1 cut(s) 183
XspI CTAG 1 cut(s) 395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.