Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0012800

Physical Location & Seq

Genomic Coordinates Forward (+)

40704406 .. 40707292

Gene Structure 2887 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ45625

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGATTCCCACTCCCTATCATCACCCGACGGTGGTCGGAGTACTTGTTGCGGCTCGCCCTCCCCATCCGTCCGTCGTGCGTTGGAACTAATCCAATCGGACGACCACGCTTTGAAGCTCGAGGGTGCCCAGGAAATTCGACGCCTCACCAAAACCTCTCAGAGGTGTCGGCGCCAACTCTCCGACTCTGTGGGCCCACTCGTCTCCATGCTCCGACTTCACGGCTCACCCGACTTTCATGAGTCTGCCCTCCTCGCCCTCCTCAACCTCGCCGTCAAGGATGACACGAACAAAATAAAGATTGTGGAAGCTGGTGCTTTAGAACCGATAATTACTTTCCTTCAGTCAGAAAATTCCAATCTGCAGGAGTATGCAACTGCATCTCTACTCACCTTATCAGCTTCTGCCTCCAACAAGCCAGTCATAAGTGCCTGCGGTGCCATTCCTCTTCTTGTTGAAATCCTTAGAGATGGAAGCCCACAAGCCAAAGTTGATTCGGTTATGGCTCTTTCCAATCTCTCAACCCACCCAATTAACCTTAGCATCATTCTTGAAGCGAAACCAGTCCCTTGTATAGTTACCTTGTTAAAAACCTGCAAAAATCTTCAAAGACAGCTGAAAAATGCTGTGCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm

Protein Analysis

211

Amino Acids

22.64

Weight (kDa)

8.24

Isoelectric Point (pI)

57.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARM_ARMC5	PF24768	26 - 163	1.3e-09	ARMC5
Arm	PF00514	97 - 133	9.8e-06	Armadillo/beta-catenin-like repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012800)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03440
fragaria_vesca	FvH4_1g29130
malus_domestica	MD09G1261900.v1.1 MD17G1256900.v1.1
prunus_persica	Prupe.3G159600_v2.0.a1
pyrus_communis	pycom09g17620 pycom17g25920
rosa_chinensis	RchiOBHm_Chr3g0493501 RchiOBHm_Chr3g0493511
rosa_laevigata	RLG00000022710
rosa_multiflora	Rmu_co8033802.1_g000001
rosa_roxburghii	Rroxscaffold_6G00391540
rosa_rugosa	Rorug03G0261600
rosa_samantha	Rh3AG310500 Rh3BG346700 Rh3CG344500 Rh3DG345800
rosa_wichuraiana	Rw3G027290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	602
AccB1I	GGYRCC	3 cut(s)	125, 171, 437
AciI	CCGC	2 cut(s)	51, 435
AcsI	RAATTY	2 cut(s)	135, 352
AcuI	CTGAAG	1 cut(s)	326
AcyI	GRCGYC	2 cut(s)	142, 172
AfaI	GTAC	1 cut(s)	43
AfiI	CCNNNNNNNGG	2 cut(s)	32, 162
AgsI	TTSAA	4 cut(s)	115, 458, 554, 608
AjnI	CCWGG	1 cut(s)	129
AluBI	AGCT	4 cut(s)	118, 311, 401, 616
AluI	AGCT	4 cut(s)	118, 311, 401, 616
Alw21I	GWGCWC	1 cut(s)	633
Alw26I	GTCTC	1 cut(s)	208
AlwNI	CAGNNNCTG	1 cut(s)	404
Ama87I	CYCGRG	1 cut(s)	119
AoxI	GGCC	1 cut(s)	193
ApaI	GGGCCC	1 cut(s)	197
ApoI	RAATTY	2 cut(s)	135, 352
AspLEI	GCGC	1 cut(s)	174
AspS9I	GGNCC	2 cut(s)	193, 194
AsuHPI	GGTGA	4 cut(s)	15, 139, 219, 382
AvaI	CYCGRG	1 cut(s)	119
BaeGI	GKGCMC	2 cut(s)	130, 197
BanI	GGYRCC	3 cut(s)	125, 171, 437
BanII	GRGCYC	1 cut(s)	197
Bbv12I	GWGCWC	1 cut(s)	633
BccI	CCATC	2 cut(s)	73, 464
BceAI	ACGGC	2 cut(s)	238, 257
BciT130I	CCWGG	1 cut(s)	131
BcoDI	GTCTC	1 cut(s)	208
BfmI	CTRYAG	1 cut(s)	362
BfoI	RGCGCY	1 cut(s)	175
BfuAI	ACCTGC	1 cut(s)	602
BisI	GCNGC	1 cut(s)	52
BlsI	GCNGC	1 cut(s)	53
BmcAI	AGTACT	1 cut(s)	43
Bme1390I	CCNGG	1 cut(s)	131
BmeT110I	CYCGRG	1 cut(s)	119
BmgT120I	GGNCC	2 cut(s)	193, 194
BmiI	GGNNCC	4 cut(s)	127, 173, 195, 439
BmrFI	CCNGG	1 cut(s)	131
BmsI	GCATC	2 cut(s)	389, 552
BoxI	GACNNNNGTC	1 cut(s)	33
Bpu10I	CCTNAGC	1 cut(s)	539
BsaHI	GRCGYC	2 cut(s)	142, 172
BsaJI	CCNNGG	1 cut(s)	129
BsaXI	ACNNNNNCTCC	2 cut(s)	31, 61
Bsc4I	CCNNNNNNNGG	2 cut(s)	32, 162
Bse1I	ACTGG	2 cut(s)	419, 563
BseBI	CCWGG	1 cut(s)	131
BseDI	CCNNGG	1 cut(s)	129
BseGI	GGATG	2 cut(s)	65, 286
BseLI	CCNNNNNNNGG	2 cut(s)	32, 162
BseMII	CTCAG	1 cut(s)	173
BseNI	ACTGG	2 cut(s)	419, 563
BseRI	GAGGAG	2 cut(s)	242, 251
BseSI	GKGCMC	2 cut(s)	130, 197
BshFI	GGCC	1 cut(s)	195
BshNI	GGYRCC	3 cut(s)	125, 171, 437
BsiHKAI	GWGCWC	1 cut(s)	633
BsiHKCI	CYCGRG	1 cut(s)	119
BslFI	GGGAC	1 cut(s)	551
BslI	CCNNNNNNNGG	2 cut(s)	32, 162
BsmAI	GTCTC	1 cut(s)	208
BsmBI	CGTCTC	1 cut(s)	208
BsmFI	GGGAC	1 cut(s)	551
BsnI	GGCC	1 cut(s)	195
BsoBI	CYCGRG	1 cut(s)	119
Bsp120I	GGGCCC	1 cut(s)	193
Bsp1286I	GDGCHC	3 cut(s)	130, 197, 633
BspACI	CCGC	2 cut(s)	51, 435
BspANI	GGCC	1 cut(s)	195
BspCNI	CTCAG	1 cut(s)	172
BspHI	TCATGA	1 cut(s)	238
BspLI	GGNNCC	4 cut(s)	127, 173, 195, 439
BspMAI	CTGCAG	1 cut(s)	366
BspMI	ACCTGC	1 cut(s)	602
BspT107I	GGYRCC	3 cut(s)	125, 171, 437
BsrI	ACTGG	2 cut(s)	419, 563
BssECI	CCNNGG	1 cut(s)	129
BssNI	GRCGYC	2 cut(s)	142, 172
Bst2UI	CCWGG	1 cut(s)	131
Bst4CI	ACNGT	1 cut(s)	32
Bst6I	CTCTTC	1 cut(s)	453
BstACI	GRCGYC	2 cut(s)	142, 172
BstC8I	GCNNGC	2 cut(s)	56, 433
BstDEI	CTNAG	3 cut(s)	159, 464, 539
BstENI	CCTNNNNNAGG	1 cut(s)	160
BstF5I	GGATG	2 cut(s)	65, 286
BstH2I	RGCGCY	1 cut(s)	175
BstHHI	GCGC	1 cut(s)	174
BstMAI	GTCTC	1 cut(s)	208
BstMWI	GCNNNNNNNGC	2 cut(s)	254, 437
BstNI	CCWGG	1 cut(s)	131
BstPAI	GACNNNNGTC	1 cut(s)	33
BstSCI	CCNGG	1 cut(s)	129
BstSFI	CTRYAG	1 cut(s)	362
BstSLI	GKGCMC	2 cut(s)	130, 197
BsuRI	GGCC	1 cut(s)	195
BtsCI	GGATG	2 cut(s)	65, 286
BveI	ACCTGC	1 cut(s)	602
Cac8I	GCNNGC	2 cut(s)	56, 433
CaiI	CAGNNNCTG	1 cut(s)	404
CciI	TCATGA	1 cut(s)	238
CfoI	GCGC	1 cut(s)	174
Cfr13I	GGNCC	2 cut(s)	193, 194
CseI	GACGC	1 cut(s)	150
Csp6I	GTAC	1 cut(s)	42
CviAII	CATG	2 cut(s)	208, 239
CviQI	GTAC	1 cut(s)	42
DdeI	CTNAG	3 cut(s)	159, 464, 539
DinI	GGCGCC	1 cut(s)	173
Eam1104I	CTCTTC	1 cut(s)	453
EarI	CTCTTC	1 cut(s)	453
Eco24I	GRGCYC	1 cut(s)	197
Eco57I	CTGAAG	1 cut(s)	326
Eco88I	CYCGRG	1 cut(s)	119
EcoNI	CCTNNNNNAGG	1 cut(s)	160
EcoRII	CCWGG	1 cut(s)	129
EcoT38I	GRGCYC	1 cut(s)	197
EgeI	GGCGCC	1 cut(s)	173
EheI	GGCGCC	1 cut(s)	173
Esp3I	CGTCTC	1 cut(s)	208
FaeI	CATG	2 cut(s)	211, 242
FaiI	YATR	6 cut(s)	209, 240, 372, 425, 503, 575
FaqI	GGGAC	1 cut(s)	551
FatI	CATG	2 cut(s)	207, 238
Fnu4HI	GCNGC	1 cut(s)	52
FokI	GGATG	2 cut(s)	52, 293
FriOI	GRGCYC	1 cut(s)	197
Fsp4HI	GCNGC	1 cut(s)	52
GlaI	GCGC	1 cut(s)	173
GluI	GCNGC	1 cut(s)	52
HaeII	RGCGCY	1 cut(s)	175
HaeIII	GGCC	1 cut(s)	195
HgaI	GACGC	1 cut(s)	150
HhaI	GCGC	1 cut(s)	174
Hin1I	GRCGYC	2 cut(s)	142, 172
Hin1II	CATG	2 cut(s)	211, 242
Hin6I	GCGC	1 cut(s)	172
HinP1I	GCGC	1 cut(s)	172
HinfI	GANTC	4 cut(s)	5, 185, 242, 494
HphI	GGTGA	4 cut(s)	15, 139, 219, 382
Hpy188I	TCNGA	6 cut(s)	39, 100, 162, 184, 215, 349
Hpy188III	TCNNGA	2 cut(s)	239, 551
Hpy99I	CGWCG	3 cut(s)	32, 78, 144
HpyAV	CCTTC	1 cut(s)	350
HpyCH4III	ACNGT	1 cut(s)	32
HpyCH4V	TGCA	4 cut(s)	364, 374, 380, 597
HpyF10VI	GCNNNNNNNGC	2 cut(s)	254, 437
HpyF3I	CTNAG	3 cut(s)	159, 464, 539
Hsp92I	GRCGYC	2 cut(s)	142, 172
Hsp92II	CATG	2 cut(s)	211, 242
HspAI	GCGC	1 cut(s)	172
KasI	GGCGCC	1 cut(s)	171
LmnI	GCTCC	1 cut(s)	216
LpnPI	CCDG	8 cut(s)	116, 143, 297, 350, 432, 445, 576, 607
LweI	GCATC	2 cut(s)	389, 552
MaeIII	GTNAC	1 cut(s)	577
MboII	GAAGA	2 cut(s)	440, 596
MhlI	GDGCHC	3 cut(s)	130, 197, 633
MluCI	AATT	4 cut(s)	135, 330, 352, 531
Mly113I	GGCGCC	1 cut(s)	172
MlyI	GAGTC	2 cut(s)	179, 251
MmeI	TCCRAC	5 cut(s)	17, 63, 207, 238, 435
MseI	TTAA	2 cut(s)	534, 587
MspA1I	CMGCKG	1 cut(s)	616
MspR9I	CCNGG	1 cut(s)	131
MvaI	CCWGG	1 cut(s)	131
MwoI	GCNNNNNNNGC	2 cut(s)	254, 437
NarI	GGCGCC	1 cut(s)	172
NlaIII	CATG	2 cut(s)	211, 242
NlaIV	GGNNCC	4 cut(s)	127, 173, 195, 439
PaeR7I	CTCGAG	1 cut(s)	119
PagI	TCATGA	1 cut(s)	238
PcsI	WCGNNNNNNNCGW	1 cut(s)	228
PfeI	GAWTC	2 cut(s)	5, 494
PkrI	GCNGC	1 cut(s)	53
PleI	GAGTC	2 cut(s)	179, 250
PluTI	GGCGCC	1 cut(s)	175
PpsI	GAGTC	2 cut(s)	179, 250
PshAI	GACNNNNGTC	1 cut(s)	33
Psp6I	CCWGG	1 cut(s)	129
PspGI	CCWGG	1 cut(s)	129
PspN4I	GGNNCC	4 cut(s)	127, 173, 195, 439
PspOMI	GGGCCC	1 cut(s)	193
PspPI	GGNCC	2 cut(s)	193, 194
PspXI	VCTCGAGB	1 cut(s)	119
PstI	CTGCAG	1 cut(s)	366
PstNI	CAGNNNCTG	1 cut(s)	404
PvuII	CAGCTG	1 cut(s)	616
RsaI	GTAC	1 cut(s)	43
RsaNI	GTAC	1 cut(s)	42
SaqAI	TTAA	2 cut(s)	534, 587
SatI	GCNGC	1 cut(s)	52
Sau96I	GGNCC	2 cut(s)	193, 194
ScaI	AGTACT	1 cut(s)	43
SchI	GAGTC	2 cut(s)	179, 251
ScrFI	CCNGG	1 cut(s)	131
SduI	GDGCHC	3 cut(s)	130, 197, 633
SfaNI	GCATC	2 cut(s)	389, 552
SfcI	CTRYAG	1 cut(s)	362
SfoI	GGCGCC	1 cut(s)	173
Sfr274I	CTCGAG	1 cut(s)	119
SlaI	CTCGAG	1 cut(s)	119
SmlI	CTYRAG	1 cut(s)	119
SmoI	CTYRAG	1 cut(s)	119
Sse9I	AATT	4 cut(s)	135, 330, 352, 531
SsiI	CCGC	2 cut(s)	51, 435
SspDI	GGCGCC	1 cut(s)	171
StyD4I	CCNGG	1 cut(s)	129
TaaI	ACNGT	1 cut(s)	32
TaqI	TCGA	2 cut(s)	120, 139
TasI	AATT	4 cut(s)	135, 330, 352, 531
TatI	WGTACW	1 cut(s)	41
TauI	GCSGC	1 cut(s)	54
TfiI	GAWTC	2 cut(s)	5, 494
Tru1I	TTAA	2 cut(s)	534, 587
Tru9I	TTAA	2 cut(s)	534, 587
TspDTI	ATGAA	1 cut(s)	227
TspGWI	ACGGA	2 cut(s)	58, 62
XagI	CCTNNNNNAGG	1 cut(s)	160
XapI	RAATTY	2 cut(s)	135, 352
XhoI	CTCGAG	1 cut(s)	119
ZrmI	AGTACT	1 cut(s)	43

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.