Prupe.3G159600_v2.0.a1

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0012800
Physical Location & Seq
Reverse (-)
17835330 .. 17838329
3000 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G159600.1

Sequence Viewer

Length: 1152 bp
ATGGATTCCCGCTCTTCATCCGACGGTCTGAATTCAACTCCAGACTCATCGTCCTCCCCCACTTCCTCACCATCCTCAGCCGTCCAACGCGCTCTGCAACTTATCCAATCCGACGACCAGGATTCCAAGCTCCAAGGCGCGCAGGAAATCCGCCGCCTCACCAAGACCTCGCACAGGTGTCGGCGCCAGCTGTCGGCCTCGGTGGGCCCGCTCGTGTCCATGCTCCGAGTCCGCGACTCGACCGAGTCTCACGAGTCCGCCCTCCTCGCTCTCCTCAATCTCGCCGTCAAGGATGAGACGAATAAAATTAAGATTGTGGAAGCTGGTGCTTTAGAACCAATAATTTCTTTCCTTGAGTCACAAAGTTCCAACCTGCAGGAGTATGCAGCTGCATCTCTACTCACTCTATCGGCTTCTGCGGTCAACAAGCCAATCATAGGTTCTTCTGGTGCCATTCCTCTTCTGGTGGAAACCCTTAGACATGGAAGCACGCAAGCCAAAGTTGATTCAGTAATGGCTCTTTCCAATCTCTCAACACACCCAAGTAACCTTACCATCATTCTTGAAGCAAAACCAATCCCTTCTATAGTCACTTTATTAAAACCCTGCAAGAAATCTTCAAAGACGGCTGAAAAATGCTGTGCTCTGATAGAGTCTCTGGTGGGATTTGATGAGGGCAGAACTGCATTGACATCTGAAGAAGGTGGAGTGCTTGCAGTGATTGAGGTGCTCGAAAATGGATCGCTGCAAAGTCGGGAGCACGCGGTTGGTGCTCTGCTAACAATGTGCCAAAGTGACAGATGCAGATATAGAGAAGCAATTCTGAAAGATGGTGTGATCCCTGGACTTCTCGAGCTCACAGTTCAAGGAACACCAAAGTCTCAGACAAAAGCACACACGCTTTTGCACTTATTGAGGGACTCCCCATATCCAAGATCAGAGTTTCAAGCAGACACACTGGAGAACATTGTATGCAACATTATCTCCCAGATTGACGGTGATGATCAGTCCGGTAAAGCGAAGAAAATGCTGGCCGAGATGGTTCAAGTTAGCATGGAGCAGAGCCTGAGACATTTGCAGCAAAGGGCTCTGGTATGCACACCAACTGATCTGCCTATCAGTACTTGCACCTCTGAAGTGTCTTTGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arm

Protein Analysis

384

Amino Acids

41.14

Weight (kDa)

6.11

Isoelectric Point (pI)

55.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012800)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03440
fragaria_vesca FvH4_1g29130
malus_domestica MD09G1261900.v1.1 MD17G1256900.v1.1
prunus_persica Prupe.3G159600_v2.0.a1
pyrus_communis pycom09g17620 pycom17g25920
rosa_chinensis RchiOBHm_Chr3g0493501 RchiOBHm_Chr3g0493511
rosa_laevigata RLG00000022710
rosa_multiflora Rmu_co8033802.1_g000001
rosa_roxburghii Rroxscaffold_6G00391540
rosa_rugosa Rorug03G0261600
rosa_samantha Rh3AG310500 Rh3BG346700 Rh3CG344500 Rh3DG345800
rosa_wichuraiana Rw3G027290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 381
AccB1I GGYRCC 2 cut(s) 183, 449
AccBSI CCGCTC 2 cut(s) 12, 211
AccII CGCG 4 cut(s) 90, 140, 234, 764
AciI CCGC 8 cut(s) 10, 151, 154, 209, 232, 258, 419, 764
AclWI GGATC 2 cut(s) 748, 832
AcoI YGGCCR 1 cut(s) 1032
AcsI RAATTY 1 cut(s) 31
AcuI CTGAAG 1 cut(s) 717
AcyI GRCGYC 1 cut(s) 184
AfaI GTAC 1 cut(s) 1123
AfiI CCNNNNNNNGG 3 cut(s) 174, 193, 437
AgsI TTSAA 7 cut(s) 36, 566, 621, 866, 947, 1046, 1147
AhdI GACNNNNNGTC 1 cut(s) 49
AjnI CCWGG 2 cut(s) 117, 841
AjuI GAANNNNNNNTTGG 2 cut(s) 424, 456
AluBI AGCT 5 cut(s) 130, 190, 323, 389, 856
AluI AGCT 5 cut(s) 130, 190, 323, 389, 856
Alw21I GWGCWC 5 cut(s) 646, 732, 762, 775, 858
Alw26I GTCTC 5 cut(s) 252, 290, 660, 885, 1063
AlwI GGATC 2 cut(s) 748, 832
AlwNI CAGNNNCTG 1 cut(s) 1066
Ama87I CYCGRG 1 cut(s) 851
AoxI GGCC 3 cut(s) 195, 205, 1032
ApaI GGGCCC 1 cut(s) 209
ApeKI GCWGC 4 cut(s) 386, 389, 745, 1078
ApoI RAATTY 1 cut(s) 31
Asp700I GAANNNNTTC 1 cut(s) 819
AspLEI GCGC 4 cut(s) 92, 140, 142, 186
AspS9I GGNCC 2 cut(s) 205, 206
AsuHPI GGTGA 3 cut(s) 60, 151, 1010
AvaI CYCGRG 1 cut(s) 851
BaeGI GKGCMC 1 cut(s) 209
BanI GGYRCC 2 cut(s) 183, 449
BanII GRGCYC 3 cut(s) 209, 858, 1090
BauI CACGAG 2 cut(s) 212, 251
Bbv12I GWGCWC 5 cut(s) 646, 732, 762, 775, 858
BbvCI CCTCAGC 1 cut(s) 76
BbvI GCAGC 4 cut(s) 376, 398, 732, 1090
BccI CCATC 4 cut(s) 79, 563, 824, 1033
BceAI ACGGC 3 cut(s) 65, 269, 642
BcgI CGANNNNNNTGC 4 cut(s) 161, 195, 1009, 1043
BciT130I CCWGG 2 cut(s) 119, 843
BclI TGATCA 1 cut(s) 1003
BcoDI GTCTC 5 cut(s) 252, 290, 660, 885, 1063
BfmI CTRYAG 2 cut(s) 374, 585
BfoI RGCGCY 1 cut(s) 187
BfuAI ACCTGC 1 cut(s) 381
BisI GCNGC 5 cut(s) 154, 387, 390, 746, 1079
BlsI GCNGC 5 cut(s) 155, 388, 391, 747, 1080
BmcAI AGTACT 1 cut(s) 1123
Bme1390I CCNGG 2 cut(s) 119, 843
BmeRI GACNNNNNGTC 1 cut(s) 49
BmeT110I CYCGRG 1 cut(s) 851
BmgT120I GGNCC 2 cut(s) 205, 206
BmiI GGNNCC 3 cut(s) 185, 207, 451
BmrFI CCNGG 2 cut(s) 119, 843
BmsI GCATC 2 cut(s) 401, 791
BpmI CTGGAG 2 cut(s) 24, 980
Bpu10I CCTNAGC 1 cut(s) 76
BpuEI CTTGAG 1 cut(s) 374
BsaHI GRCGYC 1 cut(s) 184
BsaJI CCNNGG 3 cut(s) 133, 198, 841
BsaWI WCCGGW 1 cut(s) 1010
BsaXI ACNNNNNCTCC 2 cut(s) 968, 998
Bsc4I CCNNNNNNNGG 3 cut(s) 174, 193, 437
Bse1I ACTGG 1 cut(s) 963
BseBI CCWGG 2 cut(s) 119, 843
BseDI CCNNGG 3 cut(s) 133, 198, 841
BseGI GGATG 3 cut(s) 17, 71, 298
BseLI CCNNNNNNNGG 3 cut(s) 174, 193, 437
BseMII CTCAG 3 cut(s) 90, 896, 1058
BseNI ACTGG 1 cut(s) 963
BsePI GCGCGC 1 cut(s) 138
BseRI GAGGAG 2 cut(s) 254, 263
BseSI GKGCMC 1 cut(s) 209
BseXI GCAGC 4 cut(s) 376, 398, 732, 1090
Bsh1236I CGCG 4 cut(s) 90, 140, 234, 764
Bsh1285I CGRYCG 1 cut(s) 243
BshFI GGCC 3 cut(s) 197, 207, 1034
BshNI GGYRCC 2 cut(s) 183, 449
BsiEI CGRYCG 1 cut(s) 243
BsiHKAI GWGCWC 5 cut(s) 646, 732, 762, 775, 858
BsiHKCI CYCGRG 1 cut(s) 851
BsiSI CCGG 1 cut(s) 1011
BslFI GGGAC 1 cut(s) 932
BslI CCNNNNNNNGG 3 cut(s) 174, 193, 437
BsmAI GTCTC 5 cut(s) 252, 290, 660, 885, 1063
BsmBI CGTCTC 1 cut(s) 290
BsmFI GGGAC 1 cut(s) 932
BsnI GGCC 3 cut(s) 197, 207, 1034
BsoBI CYCGRG 1 cut(s) 851
Bsp120I GGGCCC 1 cut(s) 205
Bsp1286I GDGCHC 7 cut(s) 209, 646, 732, 762, 775, 858, 1090
Bsp143I GATC 5 cut(s) 740, 837, 935, 1003, 1108
BspACI CCGC 8 cut(s) 10, 151, 154, 209, 232, 258, 419, 764
BspANI GGCC 3 cut(s) 197, 207, 1034
BspCNI CTCAG 3 cut(s) 89, 895, 1059
BspFNI CGCG 4 cut(s) 90, 140, 234, 764
BspLI GGNNCC 3 cut(s) 185, 207, 451
BspMAI CTGCAG 1 cut(s) 378
BspMI ACCTGC 1 cut(s) 381
BspPI GGATC 2 cut(s) 748, 832
BspQI GCTCTTC 1 cut(s) 19
BspT107I GGYRCC 2 cut(s) 183, 449
BsrBI CCGCTC 2 cut(s) 12, 211
BsrI ACTGG 1 cut(s) 963
BssECI CCNNGG 3 cut(s) 133, 198, 841
BssHII GCGCGC 1 cut(s) 138
BssMI GATC 5 cut(s) 740, 837, 935, 1003, 1108
BssNI GRCGYC 1 cut(s) 184
BssSI CACGAG 2 cut(s) 212, 251
BssT1I CCWWGG 1 cut(s) 133
Bst2BI CACGAG 2 cut(s) 212, 251
Bst2UI CCWGG 2 cut(s) 119, 843
Bst4CI ACNGT 3 cut(s) 26, 862, 998
Bst6I CTCTTC 2 cut(s) 19, 465
BstACI GRCGYC 1 cut(s) 184
BstC8I GCNNGC 8 cut(s) 140, 188, 209, 491, 495, 714, 762, 1032
BstDEI CTNAG 4 cut(s) 76, 476, 882, 1067
BstENI CCTNNNNNAGG 1 cut(s) 172
BstF5I GGATG 3 cut(s) 17, 71, 298
BstFNI CGCG 4 cut(s) 90, 140, 234, 764
BstH2I RGCGCY 1 cut(s) 187
BstHHI GCGC 4 cut(s) 92, 140, 142, 186
BstKTI GATC 5 cut(s) 743, 840, 938, 1006, 1111
BstMAI GTCTC 5 cut(s) 252, 290, 660, 885, 1063
BstMBI GATC 5 cut(s) 740, 837, 935, 1003, 1108
BstMCI CGRYCG 1 cut(s) 243
BstMWI GCNNNNNNNGC 2 cut(s) 266, 770
BstNI CCWGG 2 cut(s) 119, 843
BstSCI CCNGG 2 cut(s) 117, 841
BstSFI CTRYAG 2 cut(s) 374, 585
BstSLI GKGCMC 1 cut(s) 209
BstUI CGCG 4 cut(s) 90, 140, 234, 764
BstV1I GCAGC 4 cut(s) 376, 398, 732, 1090
BsuRI GGCC 3 cut(s) 197, 207, 1034
BtsCI GGATG 3 cut(s) 17, 71, 298
BtsI GCAGTG 1 cut(s) 723
BtsIMutI CAGTG 2 cut(s) 723, 956
BveI ACCTGC 1 cut(s) 381
Cac8I GCNNGC 8 cut(s) 140, 188, 209, 491, 495, 714, 762, 1032
CaiI CAGNNNCTG 1 cut(s) 1066
CfoI GCGC 4 cut(s) 92, 140, 142, 186
Cfr13I GGNCC 2 cut(s) 205, 206
Csp6I GTAC 1 cut(s) 1122
CviAII CATG 3 cut(s) 220, 482, 1054
CviQI GTAC 1 cut(s) 1122
DdeI CTNAG 4 cut(s) 76, 476, 882, 1067
DinI GGCGCC 1 cut(s) 185
DpnI GATC 5 cut(s) 742, 839, 937, 1005, 1110
DpnII GATC 5 cut(s) 740, 837, 935, 1003, 1108
DriI GACNNNNNGTC 1 cut(s) 49
EaeI YGGCCR 1 cut(s) 1032
Eam1104I CTCTTC 2 cut(s) 19, 465
Eam1105I GACNNNNNGTC 1 cut(s) 49
EarI CTCTTC 2 cut(s) 19, 465
EciI GGCGGA 2 cut(s) 140, 247
Ecl136II GAGCTC 1 cut(s) 856
Eco130I CCWWGG 1 cut(s) 133
Eco24I GRGCYC 3 cut(s) 209, 858, 1090
Eco53kI GAGCTC 1 cut(s) 856
Eco57I CTGAAG 1 cut(s) 717
Eco88I CYCGRG 1 cut(s) 851
EcoICRI GAGCTC 1 cut(s) 856
EcoNI CCTNNNNNAGG 1 cut(s) 172
EcoRI GAATTC 1 cut(s) 31
EcoRII CCWGG 2 cut(s) 117, 841
EcoT14I CCWWGG 1 cut(s) 133
EcoT38I GRGCYC 3 cut(s) 209, 858, 1090
EgeI GGCGCC 1 cut(s) 185
EheI GGCGCC 1 cut(s) 185
ErhI CCWWGG 1 cut(s) 133
Esp3I CGTCTC 1 cut(s) 290
FaeI CATG 3 cut(s) 223, 485, 1057
FaqI GGGAC 1 cut(s) 932
FatI CATG 3 cut(s) 219, 481, 1053
FauI CCCGC 2 cut(s) 17, 216
FbaI TGATCA 1 cut(s) 1003
Fnu4HI GCNGC 5 cut(s) 154, 387, 390, 746, 1079
FokI GGATG 3 cut(s) 4, 58, 305
FriOI GRGCYC 3 cut(s) 209, 858, 1090
Fsp4HI GCNGC 5 cut(s) 154, 387, 390, 746, 1079
GlaI GCGC 4 cut(s) 91, 139, 141, 185
GluI GCNGC 5 cut(s) 154, 387, 390, 746, 1079
GsuI CTGGAG 2 cut(s) 24, 980
HaeII RGCGCY 1 cut(s) 187
HaeIII GGCC 3 cut(s) 197, 207, 1034
HapII CCGG 1 cut(s) 1011
HhaI GCGC 4 cut(s) 92, 140, 142, 186
Hin1I GRCGYC 1 cut(s) 184
Hin1II CATG 3 cut(s) 223, 485, 1057
Hin6I GCGC 4 cut(s) 90, 138, 140, 184
HinP1I GCGC 4 cut(s) 90, 138, 140, 184
HincII GTYRAC 1 cut(s) 424
HindII GTYRAC 1 cut(s) 424
HpaII CCGG 1 cut(s) 1011
HphI GGTGA 3 cut(s) 60, 151, 1010
Hpy166II GTNNAC 1 cut(s) 424
Hpy188III TCNNGA 5 cut(s) 41, 251, 563, 755, 851
Hpy8I GTNNAC 1 cut(s) 424
Hpy99I CGWCG 2 cut(s) 26, 116
HpyAV CCTTC 2 cut(s) 591, 695
HpyCH4III ACNGT 3 cut(s) 26, 862, 998
HpyF10VI GCNNNNNNNGC 2 cut(s) 266, 770
HpyF3I CTNAG 4 cut(s) 76, 476, 882, 1067
Hsp92I GRCGYC 1 cut(s) 184
Hsp92II CATG 3 cut(s) 223, 485, 1057
HspAI GCGC 4 cut(s) 90, 138, 140, 184
KasI GGCGCC 1 cut(s) 183
Ksp22I TGATCA 1 cut(s) 1003
Kzo9I GATC 5 cut(s) 740, 837, 935, 1003, 1108
LguI GCTCTTC 1 cut(s) 19
LmnI GCTCC 4 cut(s) 135, 228, 757, 1057
Lsp1109I GCAGC 4 cut(s) 376, 398, 732, 1090
LweI GCATC 2 cut(s) 401, 791
MaeIII GTNAC 4 cut(s) 357, 545, 589, 794
MalI GATC 5 cut(s) 742, 839, 937, 1005, 1110
MbiI CCGCTC 2 cut(s) 12, 211
MboI GATC 5 cut(s) 740, 837, 935, 1003, 1108
MboII GAAGA 6 cut(s) 6, 435, 452, 609, 710, 1033
MhlI GDGCHC 7 cut(s) 209, 646, 732, 762, 775, 858, 1090
MluCI AATT 4 cut(s) 31, 306, 342, 819
Mly113I GGCGCC 1 cut(s) 184
MlyI GAGTC 8 cut(s) 38, 230, 237, 254, 263, 365, 662, 914
MmeI TCCRAC 4 cut(s) 45, 109, 135, 393
MroXI GAANNNNTTC 1 cut(s) 819
MseI TTAA 2 cut(s) 309, 599
MspA1I CMGCKG 2 cut(s) 190, 389
MspI CCGG 1 cut(s) 1011
MspR9I CCNGG 2 cut(s) 119, 843
MvaI CCWGG 2 cut(s) 119, 843
MvnI CGCG 4 cut(s) 90, 140, 234, 764
MwoI GCNNNNNNNGC 2 cut(s) 266, 770
NarI GGCGCC 1 cut(s) 184
NdeII GATC 5 cut(s) 740, 837, 935, 1003, 1108
NlaIII CATG 3 cut(s) 223, 485, 1057
NlaIV GGNNCC 3 cut(s) 185, 207, 451
NmeAIII GCCGAG 1 cut(s) 1060
NmuCI GTSAC 3 cut(s) 357, 589, 794
PaeR7I CTCGAG 1 cut(s) 851
PauI GCGCGC 1 cut(s) 138
PciSI GCTCTTC 1 cut(s) 19
PdmI GAANNNNTTC 1 cut(s) 819
PfeI GAWTC 3 cut(s) 5, 122, 506
PflFI GACNNNGTC 1 cut(s) 244
PkrI GCNGC 5 cut(s) 155, 388, 391, 747, 1080
PleI GAGTC 8 cut(s) 38, 230, 236, 253, 262, 364, 661, 914
PluTI GGCGCC 1 cut(s) 187
PpsI GAGTC 8 cut(s) 38, 230, 236, 253, 262, 364, 661, 914
Psp124BI GAGCTC 1 cut(s) 858
Psp6I CCWGG 2 cut(s) 117, 841
PspGI CCWGG 2 cut(s) 117, 841
PspN4I GGNNCC 3 cut(s) 185, 207, 451
PspOMI GGGCCC 1 cut(s) 205
PspPI GGNCC 2 cut(s) 205, 206
PstI CTGCAG 1 cut(s) 378
PstNI CAGNNNCTG 1 cut(s) 1066
PsyI GACNNNGTC 1 cut(s) 244
PteI GCGCGC 1 cut(s) 138
PvuII CAGCTG 2 cut(s) 190, 389
RsaI GTAC 1 cut(s) 1123
RsaNI GTAC 1 cut(s) 1122
SacI GAGCTC 1 cut(s) 858
SapI GCTCTTC 1 cut(s) 19
SaqAI TTAA 2 cut(s) 309, 599
SatI GCNGC 5 cut(s) 154, 387, 390, 746, 1079
Sau3AI GATC 5 cut(s) 740, 837, 935, 1003, 1108
Sau96I GGNCC 2 cut(s) 205, 206
SbfI CCTGCAGG 1 cut(s) 378
ScaI AGTACT 1 cut(s) 1123
SchI GAGTC 8 cut(s) 38, 230, 237, 254, 263, 365, 662, 914
ScrFI CCNGG 2 cut(s) 119, 843
SdaI CCTGCAGG 1 cut(s) 378
SduI GDGCHC 7 cut(s) 209, 646, 732, 762, 775, 858, 1090
SfaNI GCATC 2 cut(s) 401, 791
SfcI CTRYAG 2 cut(s) 374, 585
SfoI GGCGCC 1 cut(s) 185
Sfr274I CTCGAG 1 cut(s) 851
SlaI CTCGAG 1 cut(s) 851
SmlI CTYRAG 2 cut(s) 353, 851
SmoI CTYRAG 2 cut(s) 353, 851
Sse8387I CCTGCAGG 1 cut(s) 378
Sse9I AATT 4 cut(s) 31, 306, 342, 819
SsiI CCGC 8 cut(s) 10, 151, 154, 209, 232, 258, 419, 764
SspDI GGCGCC 1 cut(s) 183
SstI GAGCTC 1 cut(s) 858
StyD4I CCNGG 2 cut(s) 117, 841
StyI CCWWGG 1 cut(s) 133
TaaI ACNGT 3 cut(s) 26, 862, 998
TaqI TCGA 3 cut(s) 239, 732, 852
TaqII GACCGA 1 cut(s) 257
TasI AATT 4 cut(s) 31, 306, 342, 819
TatI WGTACW 1 cut(s) 1121
TauI GCSGC 1 cut(s) 156
TfiI GAWTC 3 cut(s) 5, 122, 506
Tru1I TTAA 2 cut(s) 309, 599
Tru9I TTAA 2 cut(s) 309, 599
TscAI CASTG 2 cut(s) 723, 963
TseFI GTSAC 3 cut(s) 357, 589, 794
TseI GCWGC 4 cut(s) 386, 389, 745, 1078
Tsp45I GTSAC 3 cut(s) 357, 589, 794
TspDTI ATGAA 1 cut(s) 6
TspRI CASTG 2 cut(s) 723, 963
Tth111I GACNNNGTC 1 cut(s) 244
XagI CCTNNNNNAGG 1 cut(s) 172
XapI RAATTY 1 cut(s) 31
XcmI CCANNNNNNNNNTGG 1 cut(s) 460
XhoI CTCGAG 1 cut(s) 851
XmnI GAANNNNTTC 1 cut(s) 819
ZrmI AGTACT 1 cut(s) 1123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.