FvH4_1g29130

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0012800
Physical Location & Seq
Reverse (-)
21726095 .. 21729907
3813 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g29130.t1

Sequence Viewer

Length: 1113 bp
ATGGAAGCCCACTCATCATCTTCATCCGACGGTGGTCTAAGCGTCCGTCGGGCTTTGCAACTAATCCAATCCGACGACCAAGCTCTGAAGCTGCAGGGCGCCCAGGAAATTCGACGCCTCACCAAGACCTCGCAGAGGTGTCGGCGCCAACTTTCCGGCTCGGTGGGCTCACTCGTCTCCATGCTCCGAGTTCACGACTCGCCTCAGTCTCATCAGTCTGCCCTCCTCGCTCTCCTCAACCTCGCCGTCAAAGATGAGACGAACAAAATAAAGATTGTGGAAGCTGGTGCTTTAGAACCCATTATTACTTTCCTTCACTCAGAAGATTCCAATCTGCAGGAGTATGCTACTGCATCTCTGCTCACCTTATCAGCTTCTGCCTCCAACAAGCCTTTCATTGGTGCCTCTGGTTCCATTCCTCTTCTTGTTGAAATCCTTAGACATGGAAGCCCACAAGCCAAAGTTGATTCTGTTATGGCTCTTTCCAATCTTTCAACCTACCCAATCAACCTTAGTATCATTCTTGAAGCGAAACTATTCCCTTGTATAGTTACTTTGTTAAAAACCTGCAAAAAATCTTCAAAGACAGCTGAAAAATGCTGTGCTCTGATAGAATCTTTAGTGGCCTTTGATGAGGGCAGAACTGCCTTGACATCCGAAGAAGGTGGAGTGCTTTCAGTTATTGAGGTGCTTGAAAGTGGATCACTTCAAAGTCGAGAGCACGCTGTTGGTGCTCTTTTAACAATGTGTCAAAGTGACCGATCCAAATATAGAGAGGCACTTCTTAAAGAAGGGGTAATCCCTGGACTTCTTGAGCTCACTGTTCAAGGAACAGCCAAGTCCCAGTCAAAAGCACAGACACTTTTGCGGTTACTGAGGGAGTCCCCATACCCACGATCTGAGCTTGAACCAGACACACTGGAGAATATTGTGTGCAACATTATCTCTCAAATTGATGGTGATGATCAGTCAGGCAAAGCAAAGAAGATGCTAGCCGAGATGGTTCAAGTTAGCATGGAACAGAGCTTGAGACATTTACAGCAAAGGGCTCTGGTATGCACACCAACTGATCTCCCTATCAGTACTTGTACATCTGAGGTTTCTTTAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arm

Protein Analysis

371

Amino Acids

39.98

Weight (kDa)

6.41

Isoelectric Point (pI)

60.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARM_ARMC5 PF24768 18 - 152 4.8e-08 ARMC5
ARM_PUB PF25598 34 - 295 1.8e-14 Plant U-box protein ARM repeat region
ARM_ARMC5 PF24768 160 - 307 1.3e-06 ARMC5
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012800)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03440
fragaria_vesca FvH4_1g29130
malus_domestica MD09G1261900.v1.1 MD17G1256900.v1.1
prunus_persica Prupe.3G159600_v2.0.a1
pyrus_communis pycom09g17620 pycom17g25920
rosa_chinensis RchiOBHm_Chr3g0493501 RchiOBHm_Chr3g0493511
rosa_laevigata RLG00000022710
rosa_multiflora Rmu_co8033802.1_g000001
rosa_roxburghii Rroxscaffold_6G00391540
rosa_rugosa Rorug03G0261600
rosa_samantha Rh3AG310500 Rh3BG346700 Rh3CG344500 Rh3DG345800
rosa_wichuraiana Rw3G027290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 575
AccB1I GGYRCC 3 cut(s) 98, 144, 401
AciI CCGC 1 cut(s) 868
AclWI GGATC 2 cut(s) 709, 756
AcsI RAATTY 1 cut(s) 108
AcuI CTGAAG 1 cut(s) 107
AcyI GRCGYC 3 cut(s) 99, 115, 145
AfaI GTAC 2 cut(s) 1084, 1090
AfiI CCNNNNNNNGG 2 cut(s) 135, 398
AgsI TTSAA 9 cut(s) 431, 495, 527, 582, 695, 710, 827, 908, 1007
AjnI CCWGG 2 cut(s) 102, 802
AjuI GAANNNNNNNTTGG 2 cut(s) 377, 409
AluBI AGCT 8 cut(s) 83, 91, 284, 374, 590, 817, 904, 1026
AluI AGCT 8 cut(s) 83, 91, 284, 374, 590, 817, 904, 1026
Alw21I GWGCWC 4 cut(s) 607, 723, 736, 819
Alw26I GTCTC 4 cut(s) 181, 213, 251, 1024
AlwI GGATC 2 cut(s) 709, 756
AlwNI CAGNNNCTG 1 cut(s) 377
AoxI GGCC 1 cut(s) 624
ApeKI GCWGC 1 cut(s) 91
ApoI RAATTY 1 cut(s) 108
Asp700I GAANNNNTTC 1 cut(s) 536
AspLEI GCGC 2 cut(s) 101, 147
AsuHPI GGTGA 3 cut(s) 112, 355, 971
AsuNHI GCTAGC 1 cut(s) 991
BaeI ACNNNNGTAYC 2 cut(s) 499, 532
BanI GGYRCC 3 cut(s) 98, 144, 401
BanII GRGCYC 3 cut(s) 170, 819, 1051
Bbv12I GWGCWC 4 cut(s) 607, 723, 736, 819
BbvI GCAGC 1 cut(s) 78
BccI CCATC 2 cut(s) 950, 994
BceAI ACGGC 1 cut(s) 230
BcgI CGANNNNNNTGC 2 cut(s) 122, 156
BciT130I CCWGG 2 cut(s) 104, 804
BclI TGATCA 1 cut(s) 964
BcoDI GTCTC 4 cut(s) 181, 213, 251, 1024
BfaI CTAG 1 cut(s) 992
BfmI CTRYAG 2 cut(s) 92, 335
BfoI RGCGCY 2 cut(s) 102, 148
BfuAI ACCTGC 1 cut(s) 575
BisI GCNGC 1 cut(s) 92
BlsI GCNGC 1 cut(s) 93
BmcAI AGTACT 1 cut(s) 1084
Bme1390I CCNGG 2 cut(s) 104, 804
BmiI GGNNCC 4 cut(s) 100, 146, 403, 412
BmrFI CCNGG 2 cut(s) 104, 804
BmrI ACTGGG 1 cut(s) 838
BmsI GCATC 2 cut(s) 362, 978
BmtI GCTAGC 1 cut(s) 995
BmuI ACTGGG 1 cut(s) 838
BoxI GACNNNNGTC 1 cut(s) 33
BpmI CTGGAG 1 cut(s) 941
BpuEI CTTGAG 2 cut(s) 833, 1048
BsaBI GATNNNNATC 1 cut(s) 330
BsaHI GRCGYC 3 cut(s) 99, 115, 145
BsaJI CCNNGG 2 cut(s) 102, 802
Bsc4I CCNNNNNNNGG 2 cut(s) 135, 398
Bse1I ACTGG 2 cut(s) 844, 924
Bse8I GATNNNNATC 1 cut(s) 330
BseBI CCWGG 2 cut(s) 104, 804
BseDI CCNNGG 2 cut(s) 102, 802
BseGI GGATG 2 cut(s) 23, 653
BseJI GATNNNNATC 1 cut(s) 330
BseLI CCNNNNNNNGG 2 cut(s) 135, 398
BseMII CTCAG 5 cut(s) 218, 333, 866, 891, 1086
BseNI ACTGG 2 cut(s) 844, 924
BseRI GAGGAG 2 cut(s) 215, 224
BseXI GCAGC 1 cut(s) 78
BshFI GGCC 1 cut(s) 626
BshNI GGYRCC 3 cut(s) 98, 144, 401
BsiHKAI GWGCWC 4 cut(s) 607, 723, 736, 819
BsiSI CCGG 1 cut(s) 156
BslFI GGGAC 2 cut(s) 826, 868
BslI CCNNNNNNNGG 2 cut(s) 135, 398
BsmAI GTCTC 4 cut(s) 181, 213, 251, 1024
BsmBI CGTCTC 2 cut(s) 181, 251
BsmFI GGGAC 2 cut(s) 826, 868
BsnI GGCC 1 cut(s) 626
Bsp1286I GDGCHC 6 cut(s) 170, 607, 723, 736, 819, 1051
Bsp1407I TGTACA 1 cut(s) 1088
Bsp143I GATC 5 cut(s) 701, 761, 896, 964, 1069
BspACI CCGC 1 cut(s) 868
BspANI GGCC 1 cut(s) 626
BspCNI CTCAG 5 cut(s) 217, 332, 867, 892, 1087
BspLI GGNNCC 4 cut(s) 100, 146, 403, 412
BspMAI CTGCAG 2 cut(s) 96, 339
BspMI ACCTGC 1 cut(s) 575
BspOI GCTAGC 1 cut(s) 995
BspPI GGATC 2 cut(s) 709, 756
BspT107I GGYRCC 3 cut(s) 98, 144, 401
BsrGI TGTACA 1 cut(s) 1088
BsrI ACTGG 2 cut(s) 844, 924
BssECI CCNNGG 2 cut(s) 102, 802
BssMI GATC 5 cut(s) 701, 761, 896, 964, 1069
BssNI GRCGYC 3 cut(s) 99, 115, 145
Bst2UI CCWGG 2 cut(s) 104, 804
Bst4CI ACNGT 2 cut(s) 32, 823
Bst6I CTCTTC 1 cut(s) 426
BstACI GRCGYC 3 cut(s) 99, 115, 145
BstAUI TGTACA 1 cut(s) 1088
BstC8I GCNNGC 2 cut(s) 723, 993
BstDEI CTNAG 8 cut(s) 38, 204, 319, 437, 512, 875, 900, 1095
BstENI CCTNNNNNAGG 1 cut(s) 133
BstF5I GGATG 2 cut(s) 23, 653
BstH2I RGCGCY 2 cut(s) 102, 148
BstHHI GCGC 2 cut(s) 101, 147
BstKTI GATC 5 cut(s) 704, 764, 899, 967, 1072
BstMAI GTCTC 4 cut(s) 181, 213, 251, 1024
BstMBI GATC 5 cut(s) 701, 761, 896, 964, 1069
BstMWI GCNNNNNNNGC 3 cut(s) 165, 227, 731
BstNI CCWGG 2 cut(s) 104, 804
BstPAI GACNNNNGTC 1 cut(s) 33
BstSCI CCNGG 2 cut(s) 102, 802
BstSFI CTRYAG 2 cut(s) 92, 335
BstV1I GCAGC 1 cut(s) 78
BsuRI GGCC 1 cut(s) 626
BtsCI GGATG 2 cut(s) 23, 653
BtsIMutI CAGTG 2 cut(s) 819, 917
BveI ACCTGC 1 cut(s) 575
Cac8I GCNNGC 2 cut(s) 723, 993
CaiI CAGNNNCTG 1 cut(s) 377
CfoI GCGC 2 cut(s) 101, 147
CseI GACGC 2 cut(s) 31, 123
Csp6I GTAC 2 cut(s) 1083, 1089
CviAII CATG 3 cut(s) 181, 443, 1015
CviQI GTAC 2 cut(s) 1083, 1089
DdeI CTNAG 8 cut(s) 38, 204, 319, 437, 512, 875, 900, 1095
DinI GGCGCC 2 cut(s) 100, 146
DpnI GATC 5 cut(s) 703, 763, 898, 966, 1071
DpnII GATC 5 cut(s) 701, 761, 896, 964, 1069
DraI TTTAAA 1 cut(s) 1107
Eam1104I CTCTTC 1 cut(s) 426
EarI CTCTTC 1 cut(s) 426
Ecl136II GAGCTC 1 cut(s) 817
Eco24I GRGCYC 3 cut(s) 170, 819, 1051
Eco53kI GAGCTC 1 cut(s) 817
Eco57I CTGAAG 1 cut(s) 107
EcoICRI GAGCTC 1 cut(s) 817
EcoNI CCTNNNNNAGG 1 cut(s) 133
EcoRII CCWGG 2 cut(s) 102, 802
EcoT38I GRGCYC 3 cut(s) 170, 819, 1051
EgeI GGCGCC 2 cut(s) 100, 146
EheI GGCGCC 2 cut(s) 100, 146
Esp3I CGTCTC 2 cut(s) 181, 251
FaeI CATG 3 cut(s) 184, 446, 1018
FaiI YATR 9 cut(s) 182, 345, 444, 476, 548, 771, 889, 1016, 1057
FaqI GGGAC 2 cut(s) 826, 868
FatI CATG 3 cut(s) 180, 442, 1014
FbaI TGATCA 1 cut(s) 964
Fnu4HI GCNGC 1 cut(s) 92
FokI GGATG 2 cut(s) 10, 640
FriOI GRGCYC 3 cut(s) 170, 819, 1051
Fsp4HI GCNGC 1 cut(s) 92
FspBI CTAG 1 cut(s) 992
GlaI GCGC 2 cut(s) 100, 146
GluI GCNGC 1 cut(s) 92
GsuI CTGGAG 1 cut(s) 941
HaeII RGCGCY 2 cut(s) 102, 148
HaeIII GGCC 1 cut(s) 626
HapII CCGG 1 cut(s) 156
HgaI GACGC 2 cut(s) 31, 123
HhaI GCGC 2 cut(s) 101, 147
Hin1I GRCGYC 3 cut(s) 99, 115, 145
Hin1II CATG 3 cut(s) 184, 446, 1018
Hin6I GCGC 2 cut(s) 99, 145
HinP1I GCGC 2 cut(s) 99, 145
HinfI GANTC 5 cut(s) 197, 326, 467, 614, 881
HpaII CCGG 1 cut(s) 156
HphI GGTGA 3 cut(s) 112, 355, 971
Hpy166II GTNNAC 1 cut(s) 193
Hpy188I TCNGA 9 cut(s) 28, 73, 87, 188, 322, 609, 658, 901, 1096
Hpy188III TCNNGA 4 cut(s) 194, 524, 716, 812
Hpy8I GTNNAC 1 cut(s) 193
Hpy99I CGWCG 4 cut(s) 32, 51, 77, 117
HpyAV CCTTC 3 cut(s) 323, 656, 785
HpyCH4III ACNGT 2 cut(s) 32, 823
HpyCH4V TGCA 7 cut(s) 58, 94, 337, 353, 570, 936, 1059
HpyF10VI GCNNNNNNNGC 3 cut(s) 165, 227, 731
HpyF3I CTNAG 8 cut(s) 38, 204, 319, 437, 512, 875, 900, 1095
Hsp92I GRCGYC 3 cut(s) 99, 115, 145
Hsp92II CATG 3 cut(s) 184, 446, 1018
HspAI GCGC 2 cut(s) 99, 145
KasI GGCGCC 2 cut(s) 98, 144
Ksp22I TGATCA 1 cut(s) 964
Kzo9I GATC 5 cut(s) 701, 761, 896, 964, 1069
LmnI GCTCC 1 cut(s) 189
Lsp1109I GCAGC 1 cut(s) 78
LweI GCATC 2 cut(s) 362, 978
MaeI CTAG 1 cut(s) 992
MaeIII GTNAC 3 cut(s) 550, 755, 870
MalI GATC 5 cut(s) 703, 763, 898, 966, 1071
MboI GATC 5 cut(s) 701, 761, 896, 964, 1069
MboII GAAGA 6 cut(s) 12, 335, 413, 570, 671, 997
MhlI GDGCHC 6 cut(s) 170, 607, 723, 736, 819, 1051
MluCI AATT 2 cut(s) 108, 951
Mly113I GGCGCC 2 cut(s) 99, 145
MlyI GAGTC 2 cut(s) 191, 890
MmeI TCCRAC 3 cut(s) 51, 96, 408
MroXI GAANNNNTTC 1 cut(s) 536
MseI TTAA 4 cut(s) 560, 740, 786, 1106
MspA1I CMGCKG 1 cut(s) 590
MspI CCGG 1 cut(s) 156
MspR9I CCNGG 2 cut(s) 104, 804
MvaI CCWGG 2 cut(s) 104, 804
MwoI GCNNNNNNNGC 3 cut(s) 165, 227, 731
NarI GGCGCC 2 cut(s) 99, 145
NdeII GATC 5 cut(s) 701, 761, 896, 964, 1069
NheI GCTAGC 1 cut(s) 991
NlaIII CATG 3 cut(s) 184, 446, 1018
NlaIV GGNNCC 4 cut(s) 100, 146, 403, 412
NmeAIII GCCGAG 1 cut(s) 1021
NmuCI GTSAC 1 cut(s) 755
PdmI GAANNNNTTC 1 cut(s) 536
PfeI GAWTC 3 cut(s) 326, 467, 614
PkrI GCNGC 1 cut(s) 93
PleI GAGTC 2 cut(s) 191, 889
PluTI GGCGCC 2 cut(s) 102, 148
PpsI GAGTC 2 cut(s) 191, 889
PshAI GACNNNNGTC 1 cut(s) 33
Psp124BI GAGCTC 1 cut(s) 819
Psp6I CCWGG 2 cut(s) 102, 802
PspGI CCWGG 2 cut(s) 102, 802
PspN4I GGNNCC 4 cut(s) 100, 146, 403, 412
PstI CTGCAG 2 cut(s) 96, 339
PstNI CAGNNNCTG 1 cut(s) 377
PvuII CAGCTG 1 cut(s) 590
RsaI GTAC 2 cut(s) 1084, 1090
RsaNI GTAC 2 cut(s) 1083, 1089
SacI GAGCTC 1 cut(s) 819
SaqAI TTAA 4 cut(s) 560, 740, 786, 1106
SatI GCNGC 1 cut(s) 92
Sau3AI GATC 5 cut(s) 701, 761, 896, 964, 1069
ScaI AGTACT 1 cut(s) 1084
SchI GAGTC 2 cut(s) 191, 890
ScrFI CCNGG 2 cut(s) 104, 804
SduI GDGCHC 6 cut(s) 170, 607, 723, 736, 819, 1051
SfaNI GCATC 2 cut(s) 362, 978
SfcI CTRYAG 2 cut(s) 92, 335
SfoI GGCGCC 2 cut(s) 100, 146
SmlI CTYRAG 2 cut(s) 812, 1027
SmoI CTYRAG 2 cut(s) 812, 1027
Sse9I AATT 2 cut(s) 108, 951
SsiI CCGC 1 cut(s) 868
SspDI GGCGCC 2 cut(s) 98, 144
SspI AATATT 1 cut(s) 928
SspMI CTAG 1 cut(s) 992
SstI GAGCTC 1 cut(s) 819
StyD4I CCNGG 2 cut(s) 102, 802
TaaI ACNGT 2 cut(s) 32, 823
TaqI TCGA 2 cut(s) 112, 715
TaqII GACCGA 1 cut(s) 774
TasI AATT 2 cut(s) 108, 951
TatI WGTACW 2 cut(s) 1082, 1088
TfiI GAWTC 3 cut(s) 326, 467, 614
Tru1I TTAA 4 cut(s) 560, 740, 786, 1106
Tru9I TTAA 4 cut(s) 560, 740, 786, 1106
TscAI CASTG 2 cut(s) 826, 924
TseFI GTSAC 1 cut(s) 755
TseI GCWGC 1 cut(s) 91
Tsp45I GTSAC 1 cut(s) 755
TspDTI ATGAA 2 cut(s) 12, 385
TspGWI ACGGA 1 cut(s) 35
TspRI CASTG 2 cut(s) 826, 924
XagI CCTNNNNNAGG 1 cut(s) 133
XapI RAATTY 1 cut(s) 108
XmnI GAANNNNTTC 1 cut(s) 536
XspI CTAG 1 cut(s) 992
ZrmI AGTACT 1 cut(s) 1084
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.