MD09G1261900.v1.1

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0012800
Physical Location & Seq
Reverse (-)
33529124 .. 33533060
3937 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1261900.v1.1.491

Sequence Viewer

Length: 1149 bp
ATGGATTCCCGTTCATCATCCGACGGTCGCAATTCGACTCCGGACTCACCCTCTTCCACCTTCTCCTCCTCCTCAGCCGTCCATCGCGCTCTGCAACTCATCCAATCCGACGACCAGGACTCCAAGCTCCAGGGCGCCCAGGAAATCCGGCGCCTCACCAAGACCTCGCAGCGCTGTCGGCGCCAGCTCTCCGACTCGGTGGGCCCACTCGTCTCCATGCTCCGAGTTTGCGACTCGCCCGAGTCCCATGAATCGGCCCTACTCGCCCTCCTCAACCTCGCCGTCAAGGATGAGACGAACAAAATTAAGATAGTGGAAGCTGGTGCTTTAGAACCAATAATTACTTTCCTTCAATCACAAAGTTGCAACCTTCAGGAGTGTGCAACTGCAGCTCTACTCACCCTATCGGCTTCTGCCATCAACAAGCCAGTTATAGGTGCTTCTGGTGCCATTCCTCTTCTCGTCGAAATCCTTAGACATGGAGCCCCACAAGCTAAAGTCGATTCAGTAATGGCGCTTTCCAATCTCTCCACACACCCTGCAAACCTTAGCATCATTCTTGAAGCAAAACCAATTCCGTCCATAGTTTCCTTATTGAAACCCTGCAAGAAATCTTCAAAAACGGCTGAGAAATGCTGTGCTCTGATAGAATCTCTGGTGGGATTCGATGAGGGCAGAACTGCCCTCACATCTGAAGAAGGCGGAGTGCTAGCAGTGATTGAGGTGCTTGAAAATGGATCGCTCCAAAGTCGGGAGCACGCTGTAAGTGCTCTACTAACAATGTGTCAAAGTGACAGGTGCAGATATAGAGAAGCGATCCTTAAGGACGGGGTAATCCCTGGACTTCTTGAGCTGACAGTTCAAGGCACGCCCAAGTCTCAGACAAAAGCGCATACGCTTTTGCGCTTATTGAGGGACTCTCCGTACCCCAGATCAGATCTTCAGGCAGACACACTGGAGAACATTGTATGCAACATCATCTCTCAGATTGACAGTGATGACCAGTCCAATAAAGCGAAGAAAATGCTGGCCGAGATGGTTCAAGTCAGCATGGAACAAAGCTTGAGACATTTACAGCAAAGGGCTCTGGTATGCACATCAACTGATCTGCCTATCAGTACTTGCACCTCTGAAGTTTCTTTGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arm

Protein Analysis

383

Amino Acids

41.12

Weight (kDa)

6.2

Isoelectric Point (pI)

64.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARM_ARMC5 PF24768 19 - 209 1.1e-11 ARMC5
ARM_PUB PF25598 169 - 307 8e-12 Plant U-box protein ARM repeat region
ARM_ARMC5 PF24768 172 - 349 4.8e-08 ARMC5
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012800)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03440
fragaria_vesca FvH4_1g29130
malus_domestica MD09G1261900.v1.1 MD17G1256900.v1.1
prunus_persica Prupe.3G159600_v2.0.a1
pyrus_communis pycom09g17620 pycom17g25920
rosa_chinensis RchiOBHm_Chr3g0493501 RchiOBHm_Chr3g0493511
rosa_laevigata RLG00000022710
rosa_multiflora Rmu_co8033802.1_g000001
rosa_roxburghii Rroxscaffold_6G00391540
rosa_rugosa Rorug03G0261600
rosa_samantha Rh3AG310500 Rh3BG346700 Rh3CG344500 Rh3DG345800
rosa_wichuraiana Rw3G027290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 4 cut(s) 134, 150, 180, 446
AccII CGCG 1 cut(s) 87
AccIII TCCGGA 1 cut(s) 40
AciI CCGC 1 cut(s) 702
AclWI GGATC 2 cut(s) 745, 811
AcoI YGGCCR 1 cut(s) 1029
AcuI CTGAAG 3 cut(s) 356, 714, 926
AcyI GRCGYC 3 cut(s) 135, 151, 181
AfaI GTAC 2 cut(s) 926, 1120
AfeI AGCGCT 1 cut(s) 173
AfiI CCNNNNNNNGG 3 cut(s) 253, 434, 751
AflII CTTAAG 1 cut(s) 821
AgsI TTSAA 8 cut(s) 353, 563, 598, 618, 731, 863, 1043, 1144
AjnI CCWGG 4 cut(s) 114, 129, 138, 838
AluBI AGCT 7 cut(s) 127, 187, 320, 392, 494, 853, 1062
AluI AGCT 7 cut(s) 127, 187, 320, 392, 494, 853, 1062
Alw21I GWGCWC 3 cut(s) 643, 759, 772
Alw26I GTCTC 4 cut(s) 217, 287, 882, 1060
AlwI GGATC 2 cut(s) 745, 811
Ama87I CYCGRG 1 cut(s) 239
Aor13HI TCCGGA 1 cut(s) 40
Aor51HI AGCGCT 1 cut(s) 173
AoxI GGCC 3 cut(s) 202, 255, 1029
ApaI GGGCCC 1 cut(s) 206
ApeKI GCWGC 2 cut(s) 169, 389
AspLEI GCGC 8 cut(s) 89, 137, 153, 174, 183, 517, 892, 906
AspS9I GGNCC 3 cut(s) 202, 203, 256
AsuHPI GGTGA 3 cut(s) 39, 148, 391
AsuNHI GCTAGC 1 cut(s) 709
AvaI CYCGRG 1 cut(s) 239
BaeGI GKGCMC 1 cut(s) 206
BanI GGYRCC 4 cut(s) 134, 150, 180, 446
BanII GRGCYC 3 cut(s) 206, 487, 1087
Bbv12I GWGCWC 3 cut(s) 643, 759, 772
BbvCI CCTCAGC 1 cut(s) 73
BbvI GCAGC 2 cut(s) 181, 401
BccI CCATC 3 cut(s) 90, 425, 1030
BceAI ACGGC 3 cut(s) 62, 266, 639
BcgI CGANNNNNNTGC 4 cut(s) 158, 192, 1006, 1040
BciT130I CCWGG 4 cut(s) 116, 131, 140, 840
BcoDI GTCTC 4 cut(s) 217, 287, 882, 1060
BfaI CTAG 1 cut(s) 710
BfmI CTRYAG 1 cut(s) 387
BfoI RGCGCY 5 cut(s) 138, 154, 175, 184, 518
BfrI CTTAAG 1 cut(s) 821
BglII AGATCT 1 cut(s) 937
BisI GCNGC 2 cut(s) 170, 390
BlsI GCNGC 2 cut(s) 171, 391
BmcAI AGTACT 1 cut(s) 1120
Bme1390I CCNGG 4 cut(s) 116, 131, 140, 840
BmeT110I CYCGRG 1 cut(s) 239
BmgT120I GGNCC 3 cut(s) 202, 203, 256
BmiI GGNNCC 6 cut(s) 136, 152, 182, 204, 448, 484
BmrFI CCNGG 4 cut(s) 116, 131, 140, 840
BmsI GCATC 1 cut(s) 561
BmtI GCTAGC 1 cut(s) 713
BplI GAGNNNNNCTC 2 cut(s) 904, 936
BpmI CTGGAG 2 cut(s) 113, 977
Bpu10I CCTNAGC 2 cut(s) 73, 548
BpuEI CTTGAG 2 cut(s) 869, 1084
BsaHI GRCGYC 3 cut(s) 135, 151, 181
BsaJI CCNNGG 3 cut(s) 130, 138, 838
BsaWI WCCGGW 1 cut(s) 40
BsaXI ACNNNNNCTCC 4 cut(s) 104, 134, 252, 282
Bsc4I CCNNNNNNNGG 3 cut(s) 253, 434, 751
Bse1I ACTGG 3 cut(s) 428, 960, 1003
BseAI TCCGGA 1 cut(s) 40
BseBI CCWGG 4 cut(s) 116, 131, 140, 840
BseDI CCNNGG 3 cut(s) 130, 138, 838
BseGI GGATG 3 cut(s) 17, 99, 295
BseLI CCNNNNNNNGG 3 cut(s) 253, 434, 751
BseMII CTCAG 4 cut(s) 87, 618, 893, 998
BseNI ACTGG 3 cut(s) 428, 960, 1003
BseRI GAGGAG 4 cut(s) 55, 58, 61, 260
BseSI GKGCMC 1 cut(s) 206
BseXI GCAGC 2 cut(s) 181, 401
BsgI GTGCAG 1 cut(s) 820
Bsh1236I CGCG 1 cut(s) 87
Bsh1285I CGRYCG 1 cut(s) 28
BshFI GGCC 3 cut(s) 204, 257, 1031
BshNI GGYRCC 4 cut(s) 134, 150, 180, 446
BsiEI CGRYCG 1 cut(s) 28
BsiHKAI GWGCWC 3 cut(s) 643, 759, 772
BsiHKCI CYCGRG 1 cut(s) 239
BsiSI CCGG 2 cut(s) 41, 148
BslFI GGGAC 2 cut(s) 229, 929
BslI CCNNNNNNNGG 3 cut(s) 253, 434, 751
BsmAI GTCTC 4 cut(s) 217, 287, 882, 1060
BsmBI CGTCTC 2 cut(s) 217, 287
BsmFI GGGAC 2 cut(s) 229, 929
BsnI GGCC 3 cut(s) 204, 257, 1031
BsoBI CYCGRG 1 cut(s) 239
Bsp120I GGGCCC 1 cut(s) 202
Bsp1286I GDGCHC 6 cut(s) 206, 487, 643, 759, 772, 1087
Bsp13I TCCGGA 1 cut(s) 40
Bsp143I GATC 5 cut(s) 737, 816, 932, 937, 1105
BspACI CCGC 1 cut(s) 702
BspANI GGCC 3 cut(s) 204, 257, 1031
BspCNI CTCAG 4 cut(s) 86, 619, 892, 997
BspEI TCCGGA 1 cut(s) 40
BspFNI CGCG 1 cut(s) 87
BspLI GGNNCC 6 cut(s) 136, 152, 182, 204, 448, 484
BspMAI CTGCAG 1 cut(s) 391
BspOI GCTAGC 1 cut(s) 713
BspPI GGATC 2 cut(s) 745, 811
BspT107I GGYRCC 4 cut(s) 134, 150, 180, 446
BspTI CTTAAG 1 cut(s) 821
BsrI ACTGG 3 cut(s) 428, 960, 1003
BssECI CCNNGG 3 cut(s) 130, 138, 838
BssMI GATC 5 cut(s) 737, 816, 932, 937, 1105
BssNI GRCGYC 3 cut(s) 135, 151, 181
Bst2UI CCWGG 4 cut(s) 116, 131, 140, 840
Bst4CI ACNGT 3 cut(s) 26, 859, 995
Bst6I CTCTTC 2 cut(s) 58, 462
BstACI GRCGYC 3 cut(s) 135, 151, 181
BstAFI CTTAAG 1 cut(s) 821
BstC8I GCNNGC 5 cut(s) 185, 711, 759, 869, 1029
BstDEI CTNAG 6 cut(s) 73, 473, 548, 627, 879, 984
BstF5I GGATG 3 cut(s) 17, 99, 295
BstFNI CGCG 1 cut(s) 87
BstH2I RGCGCY 5 cut(s) 138, 154, 175, 184, 518
BstHHI GCGC 8 cut(s) 89, 137, 153, 174, 183, 517, 892, 906
BstKTI GATC 5 cut(s) 740, 819, 935, 940, 1108
BstMAI GTCTC 4 cut(s) 217, 287, 882, 1060
BstMBI GATC 5 cut(s) 737, 816, 932, 937, 1105
BstMCI CGRYCG 1 cut(s) 28
BstMWI GCNNNNNNNGC 7 cut(s) 178, 180, 263, 389, 446, 491, 767
BstNI CCWGG 4 cut(s) 116, 131, 140, 840
BstSCI CCNGG 4 cut(s) 114, 129, 138, 838
BstSFI CTRYAG 1 cut(s) 387
BstSLI GKGCMC 1 cut(s) 206
BstUI CGCG 1 cut(s) 87
BstV1I GCAGC 2 cut(s) 181, 401
BstX2I RGATCY 1 cut(s) 937
BstYI RGATCY 1 cut(s) 937
BsuRI GGCC 3 cut(s) 204, 257, 1031
BtgZI GCGATG 1 cut(s) 68
BtsCI GGATG 3 cut(s) 17, 99, 295
BtsI GCAGTG 1 cut(s) 720
BtsIMutI CAGTG 3 cut(s) 720, 953, 1000
Cac8I GCNNGC 5 cut(s) 185, 711, 759, 869, 1029
CfoI GCGC 8 cut(s) 89, 137, 153, 174, 183, 517, 892, 906
Cfr13I GGNCC 3 cut(s) 202, 203, 256
Csp6I GTAC 2 cut(s) 925, 1119
CviAII CATG 4 cut(s) 217, 248, 479, 1051
CviQI GTAC 2 cut(s) 925, 1119
DdeI CTNAG 6 cut(s) 73, 473, 548, 627, 879, 984
DinI GGCGCC 3 cut(s) 136, 152, 182
DpnI GATC 5 cut(s) 739, 818, 934, 939, 1107
DpnII GATC 5 cut(s) 737, 816, 932, 937, 1105
EaeI YGGCCR 1 cut(s) 1029
Eam1104I CTCTTC 2 cut(s) 58, 462
EarI CTCTTC 2 cut(s) 58, 462
EciI GGCGGA 1 cut(s) 717
Eco24I GRGCYC 3 cut(s) 206, 487, 1087
Eco47III AGCGCT 1 cut(s) 173
Eco57I CTGAAG 3 cut(s) 356, 714, 926
Eco88I CYCGRG 1 cut(s) 239
EcoRII CCWGG 4 cut(s) 114, 129, 138, 838
EcoT38I GRGCYC 3 cut(s) 206, 487, 1087
EgeI GGCGCC 3 cut(s) 136, 152, 182
EheI GGCGCC 3 cut(s) 136, 152, 182
Esp3I CGTCTC 2 cut(s) 217, 287
FaeI CATG 4 cut(s) 220, 251, 482, 1054
FalI AAGNNNNNCTT 2 cut(s) 804, 836
FaqI GGGAC 2 cut(s) 229, 929
FatI CATG 4 cut(s) 216, 247, 478, 1050
Fnu4HI GCNGC 2 cut(s) 170, 390
FokI GGATG 3 cut(s) 4, 86, 302
FriOI GRGCYC 3 cut(s) 206, 487, 1087
Fsp4HI GCNGC 2 cut(s) 170, 390
FspBI CTAG 1 cut(s) 710
GlaI GCGC 8 cut(s) 88, 136, 152, 173, 182, 516, 891, 905
GluI GCNGC 2 cut(s) 170, 390
GsuI CTGGAG 2 cut(s) 113, 977
HaeII RGCGCY 5 cut(s) 138, 154, 175, 184, 518
HaeIII GGCC 3 cut(s) 204, 257, 1031
HapII CCGG 2 cut(s) 41, 148
HhaI GCGC 8 cut(s) 89, 137, 153, 174, 183, 517, 892, 906
Hin1I GRCGYC 3 cut(s) 135, 151, 181
Hin1II CATG 4 cut(s) 220, 251, 482, 1054
Hin6I GCGC 8 cut(s) 87, 135, 151, 172, 181, 515, 890, 904
HinP1I GCGC 8 cut(s) 87, 135, 151, 172, 181, 515, 890, 904
HindIII AAGCTT 1 cut(s) 1060
HpaII CCGG 2 cut(s) 41, 148
HphI GGTGA 3 cut(s) 39, 148, 391
Hpy188III TCNNGA 5 cut(s) 41, 374, 560, 752, 848
Hpy99I CGWCG 3 cut(s) 26, 113, 467
HpyAV CCTTC 4 cut(s) 70, 359, 380, 692
HpyCH4III ACNGT 3 cut(s) 26, 859, 995
HpyF10VI GCNNNNNNNGC 7 cut(s) 178, 180, 263, 389, 446, 491, 767
HpyF3I CTNAG 6 cut(s) 73, 473, 548, 627, 879, 984
Hsp92I GRCGYC 3 cut(s) 135, 151, 181
Hsp92II CATG 4 cut(s) 220, 251, 482, 1054
HspAI GCGC 8 cut(s) 87, 135, 151, 172, 181, 515, 890, 904
KasI GGCGCC 3 cut(s) 134, 150, 180
Kpn2I TCCGGA 1 cut(s) 40
Kzo9I GATC 5 cut(s) 737, 816, 932, 937, 1105
LmnI GCTCC 5 cut(s) 132, 225, 482, 747, 754
Lsp1109I GCAGC 2 cut(s) 181, 401
LweI GCATC 1 cut(s) 561
MaeI CTAG 1 cut(s) 710
MaeIII GTNAC 1 cut(s) 791
MalI GATC 5 cut(s) 739, 818, 934, 939, 1107
MboI GATC 5 cut(s) 737, 816, 932, 937, 1105
MboII GAAGA 6 cut(s) 45, 449, 606, 707, 932, 1030
MflI RGATCY 1 cut(s) 937
MhlI GDGCHC 6 cut(s) 206, 487, 643, 759, 772, 1087
MluCI AATT 4 cut(s) 31, 303, 339, 573
Mly113I GGCGCC 3 cut(s) 135, 151, 181
MlyI GAGTC 7 cut(s) 31, 38, 113, 188, 227, 251, 911
MmeI TCCRAC 3 cut(s) 45, 132, 216
MroI TCCGGA 1 cut(s) 40
MseI TTAA 2 cut(s) 306, 822
MspCI CTTAAG 1 cut(s) 821
MspI CCGG 2 cut(s) 41, 148
MspR9I CCNGG 4 cut(s) 116, 131, 140, 840
MvaI CCWGG 4 cut(s) 116, 131, 140, 840
MvnI CGCG 1 cut(s) 87
MwoI GCNNNNNNNGC 7 cut(s) 178, 180, 263, 389, 446, 491, 767
NarI GGCGCC 3 cut(s) 135, 151, 181
NdeII GATC 5 cut(s) 737, 816, 932, 937, 1105
NheI GCTAGC 1 cut(s) 709
NlaIII CATG 4 cut(s) 220, 251, 482, 1054
NlaIV GGNNCC 6 cut(s) 136, 152, 182, 204, 448, 484
NmeAIII GCCGAG 1 cut(s) 1057
NmuCI GTSAC 1 cut(s) 791
PfeI GAWTC 5 cut(s) 5, 251, 503, 650, 663
PkrI GCNGC 2 cut(s) 171, 391
PleI GAGTC 7 cut(s) 31, 38, 113, 188, 227, 250, 911
PluTI GGCGCC 3 cut(s) 138, 154, 184
PpsI GAGTC 7 cut(s) 31, 38, 113, 188, 227, 250, 911
Psp6I CCWGG 4 cut(s) 114, 129, 138, 838
PspGI CCWGG 4 cut(s) 114, 129, 138, 838
PspN4I GGNNCC 6 cut(s) 136, 152, 182, 204, 448, 484
PspOMI GGGCCC 1 cut(s) 202
PspPI GGNCC 3 cut(s) 202, 203, 256
PstI CTGCAG 1 cut(s) 391
PsuI RGATCY 1 cut(s) 937
RsaI GTAC 2 cut(s) 926, 1120
RsaNI GTAC 2 cut(s) 925, 1119
SaqAI TTAA 2 cut(s) 306, 822
SatI GCNGC 2 cut(s) 170, 390
Sau3AI GATC 5 cut(s) 737, 816, 932, 937, 1105
Sau96I GGNCC 3 cut(s) 202, 203, 256
ScaI AGTACT 1 cut(s) 1120
SchI GAGTC 7 cut(s) 31, 38, 113, 188, 227, 251, 911
ScrFI CCNGG 4 cut(s) 116, 131, 140, 840
SduI GDGCHC 6 cut(s) 206, 487, 643, 759, 772, 1087
SfaNI GCATC 1 cut(s) 561
SfcI CTRYAG 1 cut(s) 387
SfoI GGCGCC 3 cut(s) 136, 152, 182
SmlI CTYRAG 3 cut(s) 821, 848, 1063
SmoI CTYRAG 3 cut(s) 821, 848, 1063
Sse9I AATT 4 cut(s) 31, 303, 339, 573
SsiI CCGC 1 cut(s) 702
SspDI GGCGCC 3 cut(s) 134, 150, 180
SspMI CTAG 1 cut(s) 710
StyD4I CCNGG 4 cut(s) 114, 129, 138, 838
TaaI ACNGT 3 cut(s) 26, 859, 995
TaqI TCGA 4 cut(s) 35, 465, 501, 666
TasI AATT 4 cut(s) 31, 303, 339, 573
TatI WGTACW 1 cut(s) 1118
TfiI GAWTC 5 cut(s) 5, 251, 503, 650, 663
Tru1I TTAA 2 cut(s) 306, 822
Tru9I TTAA 2 cut(s) 306, 822
TscAI CASTG 3 cut(s) 720, 960, 1000
TseFI GTSAC 1 cut(s) 791
TseI GCWGC 2 cut(s) 169, 389
Tsp45I GTSAC 1 cut(s) 791
TspDTI ATGAA 1 cut(s) 264
TspGWI ACGGA 2 cut(s) 567, 912
TspRI CASTG 3 cut(s) 720, 960, 1000
Vha464I CTTAAG 1 cut(s) 821
XspI CTAG 1 cut(s) 710
ZrmI AGTACT 1 cut(s) 1120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.