U-box domain-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G03440 |
| fragaria_vesca | FvH4_1g29130 |
| malus_domestica | MD09G1261900.v1.1 MD17G1256900.v1.1 |
| prunus_persica | Prupe.3G159600_v2.0.a1 |
| pyrus_communis | pycom09g17620 pycom17g25920 |
| rosa_chinensis | RchiOBHm_Chr3g0493501 RchiOBHm_Chr3g0493511 |
| rosa_laevigata | RLG00000022710 |
| rosa_multiflora | Rmu_co8033802.1_g000001 |
| rosa_roxburghii | Rroxscaffold_6G00391540 |
| rosa_rugosa | Rorug03G0261600 |
| rosa_samantha | Rh3AG310500 Rh3BG346700 Rh3CG344500 Rh3DG345800 |
| rosa_wichuraiana | Rw3G027290 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 228 |
| AfaI | GTAC | 1 cut(s) | 346 |
| AgsI | TTSAA | 3 cut(s) | 83, 164, 263 |
| AjnI | CCWGG | 1 cut(s) | 58 |
| AluBI | AGCT | 4 cut(s) | 73, 160, 251, 282 |
| AluI | AGCT | 4 cut(s) | 73, 160, 251, 282 |
| Alw21I | GWGCWC | 1 cut(s) | 75 |
| Alw26I | GTCTC | 2 cut(s) | 102, 280 |
| AlwI | GGATC | 1 cut(s) | 228 |
| Ama87I | CYCGRG | 1 cut(s) | 176 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 36 |
| AsuHPI | GGTGA | 1 cut(s) | 227 |
| AsuNHI | GCTAGC | 1 cut(s) | 247 |
| AvaI | CYCGRG | 1 cut(s) | 176 |
| BanII | GRGCYC | 2 cut(s) | 75, 307 |
| Bbv12I | GWGCWC | 1 cut(s) | 75 |
| BccI | CCATC | 2 cut(s) | 206, 250 |
| BciT130I | CCWGG | 1 cut(s) | 60 |
| BcoDI | GTCTC | 2 cut(s) | 102, 280 |
| BfaI | CTAG | 1 cut(s) | 248 |
| Bme1390I | CCNGG | 1 cut(s) | 60 |
| BmeT110I | CYCGRG | 1 cut(s) | 176 |
| BmrFI | CCNGG | 1 cut(s) | 60 |
| BmsI | GCATC | 2 cut(s) | 8, 234 |
| BmtI | GCTAGC | 1 cut(s) | 251 |
| BpuEI | CTTGAG | 2 cut(s) | 89, 304 |
| BsaJI | CCNNGG | 1 cut(s) | 58 |
| BsaWI | WCCGGW | 1 cut(s) | 166 |
| BseBI | CCWGG | 1 cut(s) | 60 |
| BseDI | CCNNGG | 1 cut(s) | 58 |
| BseMII | CTCAG | 6 cut(s) | 113, 122, 147, 218, 243, 342 |
| BsiHKAI | GWGCWC | 1 cut(s) | 75 |
| BsiHKCI | CYCGRG | 1 cut(s) | 176 |
| BsiSI | CCGG | 1 cut(s) | 167 |
| BslFI | GGGAC | 1 cut(s) | 124 |
| BsmAI | GTCTC | 2 cut(s) | 102, 280 |
| BsmFI | GGGAC | 1 cut(s) | 124 |
| BsoBI | CYCGRG | 1 cut(s) | 176 |
| Bsp1286I | GDGCHC | 2 cut(s) | 75, 307 |
| Bsp143I | GATC | 3 cut(s) | 152, 220, 325 |
| BspCNI | CTCAG | 6 cut(s) | 112, 123, 148, 217, 244, 343 |
| BspOI | GCTAGC | 1 cut(s) | 251 |
| BspPI | GGATC | 1 cut(s) | 228 |
| BssECI | CCNNGG | 1 cut(s) | 58 |
| BssMI | GATC | 3 cut(s) | 152, 220, 325 |
| Bst2UI | CCWGG | 1 cut(s) | 60 |
| Bst4CI | ACNGT | 1 cut(s) | 79 |
| BstC8I | GCNNGC | 1 cut(s) | 249 |
| BstDEI | CTNAG | 6 cut(s) | 99, 131, 156, 204, 252, 351 |
| BstKTI | GATC | 3 cut(s) | 155, 223, 328 |
| BstMAI | GTCTC | 2 cut(s) | 102, 280 |
| BstMBI | GATC | 3 cut(s) | 152, 220, 325 |
| BstNI | CCWGG | 1 cut(s) | 60 |
| BstSCI | CCNGG | 1 cut(s) | 58 |
| BtsIMutI | CAGTG | 1 cut(s) | 75 |
| Cac8I | GCNNGC | 1 cut(s) | 249 |
| Csp6I | GTAC | 1 cut(s) | 345 |
| CviAII | CATG | 1 cut(s) | 271 |
| CviJI | RGCY | 6 cut(s) | 73, 92, 160, 251, 282, 305 |
| CviKI_1 | RGCY | 6 cut(s) | 73, 92, 160, 251, 282, 305 |
| CviQI | GTAC | 1 cut(s) | 345 |
| DdeI | CTNAG | 6 cut(s) | 99, 131, 156, 204, 252, 351 |
| DpnI | GATC | 3 cut(s) | 154, 222, 327 |
| DpnII | GATC | 3 cut(s) | 152, 220, 325 |
| DraI | TTTAAA | 1 cut(s) | 363 |
| Ecl136II | GAGCTC | 1 cut(s) | 73 |
| Eco24I | GRGCYC | 2 cut(s) | 75, 307 |
| Eco53kI | GAGCTC | 1 cut(s) | 73 |
| Eco88I | CYCGRG | 1 cut(s) | 176 |
| EcoICRI | GAGCTC | 1 cut(s) | 73 |
| EcoRII | CCWGG | 1 cut(s) | 58 |
| EcoT38I | GRGCYC | 2 cut(s) | 75, 307 |
| FaeI | CATG | 1 cut(s) | 274 |
| FaiI | YATR | 4 cut(s) | 27, 145, 272, 313 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 24, 56 |
| FaqI | GGGAC | 1 cut(s) | 124 |
| FatI | CATG | 1 cut(s) | 270 |
| FriOI | GRGCYC | 2 cut(s) | 75, 307 |
| FspBI | CTAG | 1 cut(s) | 248 |
| HapII | CCGG | 1 cut(s) | 167 |
| Hin1II | CATG | 1 cut(s) | 274 |
| HinfI | GANTC | 1 cut(s) | 137 |
| HpaII | CCGG | 1 cut(s) | 167 |
| HphI | GGTGA | 1 cut(s) | 227 |
| Hpy188I | TCNGA | 3 cut(s) | 157, 207, 352 |
| Hpy188III | TCNNGA | 2 cut(s) | 68, 178 |
| HpyAV | CCTTC | 1 cut(s) | 41 |
| HpyCH4III | ACNGT | 1 cut(s) | 79 |
| HpyCH4V | TGCA | 2 cut(s) | 21, 315 |
| HpyF3I | CTNAG | 6 cut(s) | 99, 131, 156, 204, 252, 351 |
| Hsp92II | CATG | 1 cut(s) | 274 |
| Kzo9I | GATC | 3 cut(s) | 152, 220, 325 |
| LpnPI | CCDG | 5 cut(s) | 45, 72, 180, 213, 293 |
| LweI | GCATC | 2 cut(s) | 8, 234 |
| MaeI | CTAG | 1 cut(s) | 248 |
| MaeIII | GTNAC | 1 cut(s) | 11 |
| MalI | GATC | 3 cut(s) | 154, 222, 327 |
| MboI | GATC | 3 cut(s) | 152, 220, 325 |
| MboII | GAAGA | 1 cut(s) | 253 |
| MhlI | GDGCHC | 2 cut(s) | 75, 307 |
| MlyI | GAGTC | 1 cut(s) | 146 |
| MmeI | TCCRAC | 1 cut(s) | 216 |
| MnlI | CCTC | 4 cut(s) | 126, 211, 346, 358 |
| MroXI | GAANNNNTTC | 1 cut(s) | 36 |
| MseI | TTAA | 2 cut(s) | 42, 362 |
| MspI | CCGG | 1 cut(s) | 167 |
| MspR9I | CCNGG | 1 cut(s) | 60 |
| MvaI | CCWGG | 1 cut(s) | 60 |
| NdeII | GATC | 3 cut(s) | 152, 220, 325 |
| NheI | GCTAGC | 1 cut(s) | 247 |
| NlaIII | CATG | 1 cut(s) | 274 |
| NmuCI | GTSAC | 1 cut(s) | 11 |
| PaeR7I | CTCGAG | 1 cut(s) | 176 |
| PdmI | GAANNNNTTC | 1 cut(s) | 36 |
| PleI | GAGTC | 1 cut(s) | 145 |
| PpsI | GAGTC | 1 cut(s) | 145 |
| Psp124BI | GAGCTC | 1 cut(s) | 75 |
| Psp6I | CCWGG | 1 cut(s) | 58 |
| PspGI | CCWGG | 1 cut(s) | 58 |
| RsaI | GTAC | 1 cut(s) | 346 |
| RsaNI | GTAC | 1 cut(s) | 345 |
| SacI | GAGCTC | 1 cut(s) | 75 |
| SaqAI | TTAA | 2 cut(s) | 42, 362 |
| Sau3AI | GATC | 3 cut(s) | 152, 220, 325 |
| SchI | GAGTC | 1 cut(s) | 146 |
| ScrFI | CCNGG | 1 cut(s) | 60 |
| SduI | GDGCHC | 2 cut(s) | 75, 307 |
| SetI | ASST | 6 cut(s) | 75, 162, 253, 284, 350, 357 |
| SfaNI | GCATC | 2 cut(s) | 8, 234 |
| Sfr274I | CTCGAG | 1 cut(s) | 176 |
| SlaI | CTCGAG | 1 cut(s) | 176 |
| SmlI | CTYRAG | 3 cut(s) | 68, 176, 283 |
| SmoI | CTYRAG | 3 cut(s) | 68, 176, 283 |
| SspI | AATATT | 1 cut(s) | 184 |
| SspMI | CTAG | 1 cut(s) | 248 |
| SstI | GAGCTC | 1 cut(s) | 75 |
| StyD4I | CCNGG | 1 cut(s) | 58 |
| TaaI | ACNGT | 1 cut(s) | 79 |
| TaqI | TCGA | 1 cut(s) | 177 |
| Tru1I | TTAA | 2 cut(s) | 42, 362 |
| Tru9I | TTAA | 2 cut(s) | 42, 362 |
| TscAI | CASTG | 1 cut(s) | 82 |
| TseFI | GTSAC | 1 cut(s) | 11 |
| Tsp45I | GTSAC | 1 cut(s) | 11 |
| TspRI | CASTG | 1 cut(s) | 82 |
| XhoI | CTCGAG | 1 cut(s) | 176 |
| XmnI | GAANNNNTTC | 1 cut(s) | 36 |
| XspI | CTAG | 1 cut(s) | 248 |