Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8033802.1

Orthogroup ID

OG0012800

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 457

Gene Structure 457 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8033802.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 457 bp

cccgtccgtcagtcacaaattgaaatcattcccatttctctcctctctctttcagcgtcttaaatcctccatcctcctcctcctcctcctgggattttcctcctctcccaagaatttgatggattcccactccctatcatcacccgacggtggtcggagtacttgctgcggctcgccctccccgtccgtccgtcgtgcgttggagctaatccaatcggacgaccacgctttgaagctccagggtgcccaggaaattcgacgcctcaccaaaacctctcagaggtgtcggcgccaactctccgactctgtgggcccactcgtctccatgctccgacttcacgactcacccgactttcatgagtctgccctcctcgccctcctcaacctcgccgtcaaggatgacacgtacgtgcttcattcttttctttttttttctcggaacttgctgaccaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm

Protein Analysis

151

Amino Acids

16.75

Weight (kDa)

9.67

Isoelectric Point (pI)

66.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012800)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03440
fragaria_vesca	FvH4_1g29130
malus_domestica	MD09G1261900.v1.1 MD17G1256900.v1.1
prunus_persica	Prupe.3G159600_v2.0.a1
pyrus_communis	pycom09g17620 pycom17g25920
rosa_chinensis	RchiOBHm_Chr3g0493501 RchiOBHm_Chr3g0493511
rosa_laevigata	RLG00000022710
rosa_multiflora	Rmu_co8033802.1_g000001
rosa_roxburghii	Rroxscaffold_6G00391540
rosa_rugosa	Rorug03G0261600
rosa_samantha	Rh3AG310500 Rh3BG346700 Rh3CG344500 Rh3DG345800
rosa_wichuraiana	Rw3G027290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	243, 289
AciI	CCGC	1 cut(s)	169
AcsI	RAATTY	2 cut(s)	113, 253
AcyI	GRCGYC	2 cut(s)	260, 290
AfaI	GTAC	2 cut(s)	161, 408
AfiI	CCNNNNNNNGG	3 cut(s)	89, 150, 280
AflIII	ACRYGT	1 cut(s)	403
AgsI	TTSAA	2 cut(s)	23, 233
AjnI	CCWGG	3 cut(s)	88, 238, 247
AleI	CACNNNNGTG	1 cut(s)	408
AluBI	AGCT	2 cut(s)	206, 236
AluI	AGCT	2 cut(s)	206, 236
Alw26I	GTCTC	1 cut(s)	326
AoxI	GGCC	1 cut(s)	311
ApaI	GGGCCC	1 cut(s)	315
ApeKI	GCWGC	1 cut(s)	166
ApoI	RAATTY	2 cut(s)	113, 253
Asp700I	GAANNNNTTC	1 cut(s)	27
AspLEI	GCGC	1 cut(s)	292
AspS9I	GGNCC	2 cut(s)	311, 312
AsuHPI	GGTGA	3 cut(s)	133, 257, 337
BaeGI	GKGCMC	2 cut(s)	248, 315
BanI	GGYRCC	2 cut(s)	243, 289
BanII	GRGCYC	1 cut(s)	315
BbvI	GCAGC	1 cut(s)	153
BccI	CCATC	2 cut(s)	78, 113
BceAI	ACGGC	1 cut(s)	375
BciT130I	CCWGG	3 cut(s)	90, 240, 249
BcoDI	GTCTC	1 cut(s)	326
BfoI	RGCGCY	1 cut(s)	293
BisI	GCNGC	2 cut(s)	167, 170
BlsI	GCNGC	2 cut(s)	168, 171
BmcAI	AGTACT	1 cut(s)	161
Bme1390I	CCNGG	3 cut(s)	90, 240, 249
BmgT120I	GGNCC	2 cut(s)	311, 312
BmiI	GGNNCC	3 cut(s)	245, 291, 313
BmrFI	CCNGG	3 cut(s)	90, 240, 249
BoxI	GACNNNNGTC	1 cut(s)	151
BpmI	CTGGAG	1 cut(s)	222
BsaAI	YACGTR	2 cut(s)	406, 410
BsaHI	GRCGYC	2 cut(s)	260, 290
BsaJI	CCNNGG	3 cut(s)	89, 239, 247
Bsc4I	CCNNNNNNNGG	3 cut(s)	89, 150, 280
BseBI	CCWGG	3 cut(s)	90, 240, 249
BseDI	CCNNGG	3 cut(s)	89, 239, 247
BseGI	GGATG	2 cut(s)	70, 404
BseLI	CCNNNNNNNGG	3 cut(s)	89, 150, 280
BseMII	CTCAG	1 cut(s)	291
BseRI	GAGGAG	8 cut(s)	32, 66, 69, 72, 75, 92, 360, 369
BseSI	GKGCMC	2 cut(s)	248, 315
BseXI	GCAGC	1 cut(s)	153
BshFI	GGCC	1 cut(s)	313
BshNI	GGYRCC	2 cut(s)	243, 289
BsiWI	CGTACG	1 cut(s)	406
BslI	CCNNNNNNNGG	3 cut(s)	89, 150, 280
BsmAI	GTCTC	1 cut(s)	326
BsmBI	CGTCTC	1 cut(s)	326
BsnI	GGCC	1 cut(s)	313
Bsp120I	GGGCCC	1 cut(s)	311
Bsp1286I	GDGCHC	2 cut(s)	248, 315
BspACI	CCGC	1 cut(s)	169
BspANI	GGCC	1 cut(s)	313
BspCNI	CTCAG	1 cut(s)	290
BspHI	TCATGA	1 cut(s)	356
BspLI	GGNNCC	3 cut(s)	245, 291, 313
BspT107I	GGYRCC	2 cut(s)	243, 289
BssECI	CCNNGG	3 cut(s)	89, 239, 247
BssNI	GRCGYC	2 cut(s)	260, 290
Bst2UI	CCWGG	3 cut(s)	90, 240, 249
Bst4CI	ACNGT	1 cut(s)	150
BstACI	GRCGYC	2 cut(s)	260, 290
BstBAI	YACGTR	2 cut(s)	406, 410
BstC8I	GCNNGC	1 cut(s)	174
BstDEI	CTNAG	1 cut(s)	277
BstENI	CCTNNNNNAGG	1 cut(s)	278
BstF5I	GGATG	2 cut(s)	70, 404
BstH2I	RGCGCY	1 cut(s)	293
BstHHI	GCGC	1 cut(s)	292
BstMAI	GTCTC	1 cut(s)	326
BstMWI	GCNNNNNNNGC	1 cut(s)	372
BstNI	CCWGG	3 cut(s)	90, 240, 249
BstPAI	GACNNNNGTC	1 cut(s)	151
BstSCI	CCNGG	3 cut(s)	88, 238, 247
BstSLI	GKGCMC	2 cut(s)	248, 315
BstV1I	GCAGC	1 cut(s)	153
BsuRI	GGCC	1 cut(s)	313
BtsCI	GGATG	2 cut(s)	70, 404
Cac8I	GCNNGC	1 cut(s)	174
CciI	TCATGA	1 cut(s)	356
CfoI	GCGC	1 cut(s)	292
Cfr13I	GGNCC	2 cut(s)	311, 312
CseI	GACGC	2 cut(s)	45, 268
Csp6I	GTAC	2 cut(s)	160, 407
CviAII	CATG	2 cut(s)	326, 357
CviJI	RGCY	4 cut(s)	172, 206, 236, 313
CviKI_1	RGCY	4 cut(s)	172, 206, 236, 313
CviQI	GTAC	2 cut(s)	160, 407
DdeI	CTNAG	1 cut(s)	277
DinI	GGCGCC	1 cut(s)	291
Eco24I	GRGCYC	1 cut(s)	315
EcoNI	CCTNNNNNAGG	1 cut(s)	278
EcoRII	CCWGG	3 cut(s)	88, 238, 247
EcoT38I	GRGCYC	1 cut(s)	315
EgeI	GGCGCC	1 cut(s)	291
EheI	GGCGCC	1 cut(s)	291
Esp3I	CGTCTC	1 cut(s)	326
FaeI	CATG	2 cut(s)	329, 360
FaiI	YATR	2 cut(s)	327, 358
FatI	CATG	2 cut(s)	325, 356
Fnu4HI	GCNGC	2 cut(s)	167, 170
FokI	GGATG	2 cut(s)	57, 411
FriOI	GRGCYC	1 cut(s)	315
Fsp4HI	GCNGC	2 cut(s)	167, 170
GlaI	GCGC	1 cut(s)	291
GluI	GCNGC	2 cut(s)	167, 170
GsuI	CTGGAG	1 cut(s)	222
HaeII	RGCGCY	1 cut(s)	293
HaeIII	GGCC	1 cut(s)	313
HgaI	GACGC	2 cut(s)	45, 268
HhaI	GCGC	1 cut(s)	292
Hin1I	GRCGYC	2 cut(s)	260, 290
Hin1II	CATG	2 cut(s)	329, 360
Hin6I	GCGC	1 cut(s)	290
HinP1I	GCGC	1 cut(s)	290
HinfI	GANTC	4 cut(s)	123, 303, 342, 360
HphI	GGTGA	3 cut(s)	133, 257, 337
Hpy188I	TCNGA	6 cut(s)	157, 218, 280, 302, 333, 439
Hpy188III	TCNNGA	2 cut(s)	339, 357
Hpy99I	CGWCG	3 cut(s)	150, 196, 262
HpyCH4III	ACNGT	1 cut(s)	150
HpyCH4IV	ACGT	2 cut(s)	405, 409
HpyF10VI	GCNNNNNNNGC	1 cut(s)	372
HpyF3I	CTNAG	1 cut(s)	277
HpySE526I	ACGT	2 cut(s)	405, 409
Hsp92I	GRCGYC	2 cut(s)	260, 290
Hsp92II	CATG	2 cut(s)	329, 360
HspAI	GCGC	1 cut(s)	290
KasI	GGCGCC	1 cut(s)	289
LmnI	GCTCC	3 cut(s)	203, 241, 334
LpnPI	CCDG	6 cut(s)	75, 102, 225, 234, 252, 261
Lsp1109I	GCAGC	1 cut(s)	153
MaeII	ACGT	2 cut(s)	405, 409
MaeIII	GTNAC	1 cut(s)	12
MfeI	CAATTG	1 cut(s)	452
MhlI	GDGCHC	2 cut(s)	248, 315
MluCI	AATT	4 cut(s)	18, 113, 253, 452
Mly113I	GGCGCC	1 cut(s)	290
MlyI	GAGTC	3 cut(s)	297, 336, 369
MmeI	TCCRAC	4 cut(s)	135, 181, 325, 356
MroXI	GAANNNNTTC	1 cut(s)	27
MseI	TTAA	1 cut(s)	61
MslI	CAYNNNNRTG	1 cut(s)	408
MspR9I	CCNGG	3 cut(s)	90, 240, 249
MunI	CAATTG	1 cut(s)	452
MvaI	CCWGG	3 cut(s)	90, 240, 249
MwoI	GCNNNNNNNGC	1 cut(s)	372
NarI	GGCGCC	1 cut(s)	290
NlaIII	CATG	2 cut(s)	329, 360
NlaIV	GGNNCC	3 cut(s)	245, 291, 313
NmuCI	GTSAC	1 cut(s)	12
OliI	CACNNNNGTG	1 cut(s)	408
PagI	TCATGA	1 cut(s)	356
PcsI	WCGNNNNNNNCGW	2 cut(s)	180, 346
PdmI	GAANNNNTTC	1 cut(s)	27
PfeI	GAWTC	1 cut(s)	123
Pfl23II	CGTACG	1 cut(s)	406
PkrI	GCNGC	2 cut(s)	168, 171
PleI	GAGTC	3 cut(s)	297, 336, 368
PluTI	GGCGCC	1 cut(s)	293
PpsI	GAGTC	3 cut(s)	297, 336, 368
Ppu21I	YACGTR	2 cut(s)	406, 410
PshAI	GACNNNNGTC	1 cut(s)	151
Psp6I	CCWGG	3 cut(s)	88, 238, 247
PspGI	CCWGG	3 cut(s)	88, 238, 247
PspLI	CGTACG	1 cut(s)	406
PspN4I	GGNNCC	3 cut(s)	245, 291, 313
PspOMI	GGGCCC	1 cut(s)	311
PspPI	GGNCC	2 cut(s)	311, 312
RsaI	GTAC	2 cut(s)	161, 408
RsaNI	GTAC	2 cut(s)	160, 407
RseI	CAYNNNNRTG	1 cut(s)	408
SaqAI	TTAA	1 cut(s)	61
SatI	GCNGC	2 cut(s)	167, 170
Sau96I	GGNCC	2 cut(s)	311, 312
ScaI	AGTACT	1 cut(s)	161
SchI	GAGTC	3 cut(s)	297, 336, 369
ScrFI	CCNGG	3 cut(s)	90, 240, 249
SduI	GDGCHC	2 cut(s)	248, 315
SetI	ASST	7 cut(s)	208, 238, 276, 285, 388, 408, 412
SfoI	GGCGCC	1 cut(s)	291
SmiMI	CAYNNNNRTG	1 cut(s)	408
Sse9I	AATT	4 cut(s)	18, 113, 253, 452
SsiI	CCGC	1 cut(s)	169
SspDI	GGCGCC	1 cut(s)	289
StyD4I	CCNGG	3 cut(s)	88, 238, 247
TaaI	ACNGT	1 cut(s)	150
TaiI	ACGT	2 cut(s)	408, 412
TaqI	TCGA	1 cut(s)	257
TasI	AATT	4 cut(s)	18, 113, 253, 452
TatI	WGTACW	1 cut(s)	159
TauI	GCSGC	1 cut(s)	172
TfiI	GAWTC	1 cut(s)	123
Tru1I	TTAA	1 cut(s)	61
Tru9I	TTAA	1 cut(s)	61
TseFI	GTSAC	1 cut(s)	12
TseI	GCWGC	1 cut(s)	166
Tsp45I	GTSAC	1 cut(s)	12
TspDTI	ATGAA	2 cut(s)	345, 405
TspGWI	ACGGA	2 cut(s)	176, 180
XagI	CCTNNNNNAGG	1 cut(s)	278
XapI	RAATTY	2 cut(s)	113, 253
XcmI	CCANNNNNNNNNTGG	1 cut(s)	116
XmnI	GAANNNNTTC	1 cut(s)	27
ZrmI	AGTACT	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.