AT3G03773

CS domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0011066
Physical Location & Seq
Forward (+)
951628 .. 954055
2428 bp
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UTR
Exon/CDS
Intron
AT3G03773.3

Sequence Viewer

Length: 453 bp
ATGAGTCGTAATCCGGAGGTTCTTTGGGCTCAGCGTTCTGATAAAGTTTACCTAACTGTCGCCTTACCTGATGCGAAGGACATTTCGGTGAAGTGTGAGCCTCAGGGTCTATTCAGTTTCTCTGCTCTTGGTGCCCAAGGCGAGCGCTTTGAATTCAGCTTGGAGTTATATGGGAAGATTATGACAGAATATCGGAAGAATGTAGGACTAAGGAACATCATATTTTCAATTCAGAAAGAAGAGAGAAGCTGGTGGACACGACTGCTGAAATCGGAAGAGAAACCTGCACCTTACATCAAAGTCGACTGGAATAAATGGTGTGATGAGGATGAGGAGGTCAACTCTGAAACAGCCTCTGATGATGAGAGTGCATTTGTTAATCAAGATAGTGAAAGCAGCGATGACGATGGATTGCTCTATCTTCCTGATCTGGAAAAGGCAAGAAACAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00590 ko01100 map00590 map01100
Pfam Domains
Protein Families
CS

Protein Analysis

150

Amino Acids

17.37

Weight (kDa)

4.6

Isoelectric Point (pI)

48.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CS PF04969 6 - 63 4.6e-06 CS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011066)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03773 AT3G03773 AT3G03773
fragaria_vesca FvH4_1g28480
malus_domestica MD12G1008700.v1.1
prunus_persica Prupe.7G010500_v2.0.a1
pyrus_communis pycom12g00650
rosa_chinensis RchiOBHm_Chr3g0496351
rosa_laevigata RLG00000022529
rosa_multiflora Rmu_co8304491.1_g000001 Rmu_sc0002461.1_g000005
rosa_roxburghii Rroxscaffold_6G00389260
rosa_rugosa Rorug03G0281700 Rorug03G0281800 Rorug03G0281900
rosa_samantha Rh3AG328500 Rh3BG364600 Rh3CG361600 Rh3DG364600
rosa_wichuraiana Rw3G028760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 292
AccB1I GGYRCC 1 cut(s) 131
AccI GTMKAC 1 cut(s) 303
AccIII TCCGGA 1 cut(s) 13
AcsI RAATTY 1 cut(s) 152
AfeI AGCGCT 1 cut(s) 146
AgsI TTSAA 2 cut(s) 152, 228
AluBI AGCT 2 cut(s) 159, 249
AluI AGCT 2 cut(s) 159, 249
AlwNI CAGNNNCTG 1 cut(s) 356
Aor13HI TCCGGA 1 cut(s) 13
Aor51HI AGCGCT 1 cut(s) 146
ApeKI GCWGC 1 cut(s) 396
ApoI RAATTY 1 cut(s) 152
AspLEI GCGC 1 cut(s) 147
AsuHPI GGTGA 1 cut(s) 100
AxyI CCTNAGG 1 cut(s) 102
BaeGI GKGCMC 1 cut(s) 136
BanI GGYRCC 1 cut(s) 131
BanII GRGCYC 1 cut(s) 31
BbvI GCAGC 1 cut(s) 408
BccI CCATC 1 cut(s) 401
BfoI RGCGCY 1 cut(s) 148
BfuAI ACCTGC 1 cut(s) 292
BisI GCNGC 1 cut(s) 397
BlpI GCTNAGC 1 cut(s) 30
BlsI GCNGC 1 cut(s) 398
BmiI GGNNCC 1 cut(s) 133
BmsI GCATC 1 cut(s) 61
BplI GAGNNNNNCTC 2 cut(s) 326, 358
Bpu1102I GCTNAGC 1 cut(s) 30
BsaJI CCNNGG 1 cut(s) 136
BsaWI WCCGGW 1 cut(s) 13
Bse1I ACTGG 1 cut(s) 311
Bse21I CCTNAGG 1 cut(s) 102
BseAI TCCGGA 1 cut(s) 13
BseDI CCNNGG 1 cut(s) 136
BseGI GGATG 1 cut(s) 334
BseMII CTCAG 2 cut(s) 44, 116
BseNI ACTGG 1 cut(s) 311
BseRI GAGGAG 1 cut(s) 347
BseSI GKGCMC 1 cut(s) 136
BseXI GCAGC 1 cut(s) 408
BsgI GTGCAG 1 cut(s) 270
BshNI GGYRCC 1 cut(s) 131
BsiSI CCGG 1 cut(s) 14
Bsp1286I GDGCHC 2 cut(s) 31, 136
Bsp13I TCCGGA 1 cut(s) 13
Bsp143I GATC 1 cut(s) 427
Bsp1720I GCTNAGC 1 cut(s) 30
BspCNI CTCAG 2 cut(s) 43, 115
BspEI TCCGGA 1 cut(s) 13
BspLI GGNNCC 1 cut(s) 133
BspMI ACCTGC 1 cut(s) 292
BspT107I GGYRCC 1 cut(s) 131
BsrI ACTGG 1 cut(s) 311
BssECI CCNNGG 1 cut(s) 136
BssMI GATC 1 cut(s) 427
BssT1I CCWWGG 1 cut(s) 136
Bst4CI ACNGT 1 cut(s) 58
Bst6I CTCTTC 2 cut(s) 234, 270
BstC8I GCNNGC 1 cut(s) 143
BstDEI CTNAG 3 cut(s) 30, 102, 209
BstF5I GGATG 1 cut(s) 334
BstH2I RGCGCY 1 cut(s) 148
BstHHI GCGC 1 cut(s) 147
BstKTI GATC 1 cut(s) 430
BstMBI GATC 1 cut(s) 427
BstMWI GCNNNNNNNGC 1 cut(s) 131
BstSLI GKGCMC 1 cut(s) 136
BstV1I GCAGC 1 cut(s) 408
Bsu36I CCTNAGG 1 cut(s) 102
BtgZI GCGATG 1 cut(s) 414
BtsCI GGATG 1 cut(s) 334
BveI ACCTGC 1 cut(s) 292
Cac8I GCNNGC 1 cut(s) 143
CaiI CAGNNNCTG 1 cut(s) 356
CfoI GCGC 1 cut(s) 147
CviJI RGCY 5 cut(s) 29, 100, 159, 249, 353
CviKI_1 RGCY 5 cut(s) 29, 100, 159, 249, 353
DdeI CTNAG 3 cut(s) 30, 102, 209
DpnI GATC 1 cut(s) 429
DpnII GATC 1 cut(s) 427
Eam1104I CTCTTC 2 cut(s) 234, 270
EarI CTCTTC 2 cut(s) 234, 270
Eco130I CCWWGG 1 cut(s) 136
Eco24I GRGCYC 1 cut(s) 31
Eco47III AGCGCT 1 cut(s) 146
Eco81I CCTNAGG 1 cut(s) 102
EcoRI GAATTC 1 cut(s) 152
EcoT14I CCWWGG 1 cut(s) 136
EcoT38I GRGCYC 1 cut(s) 31
ErhI CCWWGG 1 cut(s) 136
FaiI YATR 4 cut(s) 169, 171, 182, 221
FblI GTMKAC 1 cut(s) 303
Fnu4HI GCNGC 1 cut(s) 397
FokI GGATG 1 cut(s) 341
FriOI GRGCYC 1 cut(s) 31
Fsp4HI GCNGC 1 cut(s) 397
GlaI GCGC 1 cut(s) 146
GluI GCNGC 1 cut(s) 397
HaeII RGCGCY 1 cut(s) 148
HapII CCGG 1 cut(s) 14
HhaI GCGC 1 cut(s) 147
Hin6I GCGC 1 cut(s) 145
HinP1I GCGC 1 cut(s) 145
HincII GTYRAC 2 cut(s) 304, 340
HindII GTYRAC 2 cut(s) 304, 340
HinfI GANTC 1 cut(s) 4
HpaII CCGG 1 cut(s) 14
HphI GGTGA 1 cut(s) 100
Hpy166II GTNNAC 4 cut(s) 49, 255, 304, 340
Hpy188I TCNGA 6 cut(s) 40, 195, 234, 274, 346, 358
Hpy188III TCNNGA 4 cut(s) 14, 383, 425, 431
Hpy8I GTNNAC 4 cut(s) 49, 255, 304, 340
HpyAV CCTTC 1 cut(s) 70
HpyCH4III ACNGT 1 cut(s) 58
HpyCH4V TGCA 2 cut(s) 287, 371
HpyF10VI GCNNNNNNNGC 1 cut(s) 131
HpyF3I CTNAG 3 cut(s) 30, 102, 209
HspAI GCGC 1 cut(s) 145
Kpn2I TCCGGA 1 cut(s) 13
Kzo9I GATC 1 cut(s) 427
LpnPI CCDG 8 cut(s) 27, 81, 89, 235, 292, 297, 416, 438
Lsp1109I GCAGC 1 cut(s) 408
LweI GCATC 1 cut(s) 61
MalI GATC 1 cut(s) 429
MboI GATC 1 cut(s) 427
MboII GAAGA 5 cut(s) 187, 208, 251, 287, 413
MhlI GDGCHC 2 cut(s) 31, 136
MluCI AATT 2 cut(s) 152, 228
MlyI GAGTC 1 cut(s) 13
MnlI CCTC 6 cut(s) 10, 111, 319, 325, 328, 364
MroI TCCGGA 1 cut(s) 13
MseI TTAA 1 cut(s) 378
MslI CAYNNNNRTG 1 cut(s) 86
MspI CCGG 1 cut(s) 14
MwoI GCNNNNNNNGC 1 cut(s) 131
NdeII GATC 1 cut(s) 427
NlaIV GGNNCC 1 cut(s) 133
PkrI GCNGC 1 cut(s) 398
PleI GAGTC 1 cut(s) 12
PpsI GAGTC 1 cut(s) 12
PspN4I GGNNCC 1 cut(s) 133
PstNI CAGNNNCTG 1 cut(s) 356
RseI CAYNNNNRTG 1 cut(s) 86
SalI GTCGAC 1 cut(s) 302
SaqAI TTAA 1 cut(s) 378
SatI GCNGC 1 cut(s) 397
Sau3AI GATC 1 cut(s) 427
SchI GAGTC 1 cut(s) 13
SduI GDGCHC 2 cut(s) 31, 136
SetI ASST 8 cut(s) 21, 54, 70, 161, 251, 286, 292, 339
SfaNI GCATC 1 cut(s) 61
SmiMI CAYNNNNRTG 1 cut(s) 86
Sse9I AATT 2 cut(s) 152, 228
StyI CCWWGG 1 cut(s) 136
TaaI ACNGT 1 cut(s) 58
TaqI TCGA 1 cut(s) 303
TasI AATT 2 cut(s) 152, 228
Tru1I TTAA 1 cut(s) 378
Tru9I TTAA 1 cut(s) 378
TseI GCWGC 1 cut(s) 396
XapI RAATTY 1 cut(s) 152
XmiI GTMKAC 1 cut(s) 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.