Prupe.7G010500_v2.0.a1

CS domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0011066
Physical Location & Seq
Reverse (-)
1388522 .. 1394269
5748 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G010500.1

Sequence Viewer

Length: 633 bp
ATGAGACTCTTGACCAAATTTGACCCGTTGGCCGTACTTGATTCGAGTTTGAACATTCTTTTAGGGTTGAGGGTTGTTTCAAAGTTTCCATTTGGAAAATTCCTTATTGCCTTATACTGGGTTTTACAGTACGGAGTACACTCGATTTCTGCCTTTCCTCAGCCACGCTCCAAAATGAGTCGGCACCCGGAGGTTCTGTGGGCCCAGCGCTCCGATAAGGTGTACCTAACGGTGGCGTTACCTGACGCCAAAGACATCAACATCAAGTGTGAGCCTCAGGGCTCCTTCAGCTTCTCCGCCATTGGAGTCCAAGGCGAGCCCTTTCACTTCACTTTGGACCTTTACGGACCAATAACGCCTGATGGTTGTAAAACTAAAGCTGGGTTGAGGAACATCCTCTGCTCAATCCAGAAAGATCAGAATGGTTGGTGGAAACGGCTGCTCAAGACTGAAGAGAAGCCTGCACCTTACATTAAGGTTGATTGGAACAAATGGTGTGATGAGGACGAGGAAGACACTACTTCTGATTTGGCCTCTGATGATGACAATGCTGCGTATGTCGGTCAAGATGGTGGAAGCAGTGATGATGATGGAATGCTTTATCTTCCGGACCTGGAAAAGGCAAGAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00590 ko01100 map00590 map01100
Pfam Domains
Protein Families
CS

Protein Analysis

211

Amino Acids

23.66

Weight (kDa)

5.25

Isoelectric Point (pI)

49.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011066)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03773 AT3G03773 AT3G03773
fragaria_vesca FvH4_1g28480
malus_domestica MD12G1008700.v1.1
prunus_persica Prupe.7G010500_v2.0.a1
pyrus_communis pycom12g00650
rosa_chinensis RchiOBHm_Chr3g0496351
rosa_laevigata RLG00000022529
rosa_multiflora Rmu_co8304491.1_g000001 Rmu_sc0002461.1_g000005
rosa_roxburghii Rroxscaffold_6G00389260
rosa_rugosa Rorug03G0281700 Rorug03G0281800 Rorug03G0281900
rosa_samantha Rh3AG328500 Rh3BG364600 Rh3CG361600 Rh3DG364600
rosa_wichuraiana Rw3G028760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 183
AccIII TCCGGA 1 cut(s) 607
AciI CCGC 1 cut(s) 297
AcoI YGGCCR 1 cut(s) 30
AcsI RAATTY 2 cut(s) 17, 98
AcuI CTGAAG 2 cut(s) 271, 471
AcyI GRCGYC 1 cut(s) 246
AfaI GTAC 4 cut(s) 36, 131, 138, 224
AfeI AGCGCT 1 cut(s) 209
AfiI CCNNNNNNNGG 3 cut(s) 117, 232, 619
AgsI TTSAA 2 cut(s) 52, 81
AjnI CCWGG 1 cut(s) 612
AluBI AGCT 2 cut(s) 291, 380
AluI AGCT 2 cut(s) 291, 380
Aor13HI TCCGGA 1 cut(s) 607
Aor51HI AGCGCT 1 cut(s) 209
AoxI GGCC 3 cut(s) 30, 201, 531
ApaI GGGCCC 1 cut(s) 205
ApeKI GCWGC 2 cut(s) 439, 551
ApoI RAATTY 2 cut(s) 17, 98
AspLEI GCGC 1 cut(s) 210
AspS9I GGNCC 5 cut(s) 201, 202, 337, 347, 610
AsuC2I CCSGG 1 cut(s) 188
AvaII GGWCC 3 cut(s) 337, 347, 610
AxyI CCTNAGG 1 cut(s) 276
BaeGI GKGCMC 1 cut(s) 205
BanI GGYRCC 1 cut(s) 183
BanII GRGCYC 3 cut(s) 205, 284, 321
BbsI GAAGAC 1 cut(s) 519
BbvCI CCTCAGC 1 cut(s) 159
BbvI GCAGC 2 cut(s) 426, 538
BccI CCATC 3 cut(s) 356, 563, 584
BceAI ACGGC 2 cut(s) 17, 452
BciT130I CCWGG 1 cut(s) 614
BcnI CCSGG 1 cut(s) 188
BfoI RGCGCY 1 cut(s) 211
BisI GCNGC 2 cut(s) 440, 552
BlsI GCNGC 2 cut(s) 441, 553
Bme1390I CCNGG 2 cut(s) 188, 614
Bme18I GGWCC 3 cut(s) 337, 347, 610
BmgT120I GGNCC 5 cut(s) 201, 202, 337, 347, 610
BmiI GGNNCC 3 cut(s) 185, 203, 283
BmrFI CCNGG 2 cut(s) 188, 614
BmrI ACTGGG 1 cut(s) 127
BmuI ACTGGG 1 cut(s) 127
BpiI GAAGAC 1 cut(s) 519
Bpu10I CCTNAGC 1 cut(s) 159
BpuEI CTTGAG 1 cut(s) 428
BpuMI CCSGG 1 cut(s) 188
BsaHI GRCGYC 1 cut(s) 246
BsaJI CCNNGG 1 cut(s) 310
BsaWI WCCGGW 1 cut(s) 607
BsaXI ACNNNNNCTCC 2 cut(s) 182, 212
Bsc4I CCNNNNNNNGG 3 cut(s) 117, 232, 619
Bse1I ACTGG 1 cut(s) 122
Bse21I CCTNAGG 1 cut(s) 276
BseAI TCCGGA 1 cut(s) 607
BseBI CCWGG 1 cut(s) 614
BseDI CCNNGG 1 cut(s) 310
BseGI GGATG 1 cut(s) 393
BseLI CCNNNNNNNGG 3 cut(s) 117, 232, 619
BseMII CTCAG 2 cut(s) 173, 290
BseNI ACTGG 1 cut(s) 122
BseSI GKGCMC 1 cut(s) 205
BseXI GCAGC 2 cut(s) 426, 538
BseYI CCCAGC 2 cut(s) 204, 380
BsgI GTGCAG 1 cut(s) 447
BshFI GGCC 3 cut(s) 32, 203, 533
BshNI GGYRCC 1 cut(s) 183
BsiSI CCGG 2 cut(s) 188, 608
BslI CCNNNNNNNGG 3 cut(s) 117, 232, 619
BsmI GAATGC 1 cut(s) 600
BsnI GGCC 3 cut(s) 32, 203, 533
Bsp120I GGGCCC 1 cut(s) 201
Bsp1286I GDGCHC 3 cut(s) 205, 284, 321
Bsp13I TCCGGA 1 cut(s) 607
Bsp143I GATC 1 cut(s) 415
BspACI CCGC 1 cut(s) 297
BspANI GGCC 3 cut(s) 32, 203, 533
BspCNI CTCAG 2 cut(s) 172, 289
BspEI TCCGGA 1 cut(s) 607
BspLI GGNNCC 3 cut(s) 185, 203, 283
BspT107I GGYRCC 1 cut(s) 183
BsrI ACTGG 1 cut(s) 122
BssECI CCNNGG 1 cut(s) 310
BssMI GATC 1 cut(s) 415
BssNI GRCGYC 1 cut(s) 246
BssT1I CCWWGG 1 cut(s) 310
Bst2UI CCWGG 1 cut(s) 614
Bst4CI ACNGT 2 cut(s) 129, 232
Bst6I CTCTTC 1 cut(s) 447
BstACI GRCGYC 1 cut(s) 246
BstC8I GCNNGC 2 cut(s) 317, 462
BstDEI CTNAG 2 cut(s) 159, 276
BstENI CCTNNNNNAGG 1 cut(s) 617
BstF5I GGATG 1 cut(s) 393
BstH2I RGCGCY 1 cut(s) 211
BstHHI GCGC 1 cut(s) 210
BstKTI GATC 1 cut(s) 418
BstMBI GATC 1 cut(s) 415
BstMWI GCNNNNNNNGC 1 cut(s) 288
BstNI CCWGG 1 cut(s) 614
BstSCI CCNGG 2 cut(s) 186, 612
BstSLI GKGCMC 1 cut(s) 205
BstV1I GCAGC 2 cut(s) 426, 538
BstV2I GAAGAC 1 cut(s) 519
Bsu36I CCTNAGG 1 cut(s) 276
BsuRI GGCC 3 cut(s) 32, 203, 533
BtsCI GGATG 1 cut(s) 393
BtsI GCAGTG 1 cut(s) 586
BtsIMutI CAGTG 1 cut(s) 586
Cac8I GCNNGC 2 cut(s) 317, 462
CfoI GCGC 1 cut(s) 210
Cfr13I GGNCC 5 cut(s) 201, 202, 337, 347, 610
CseI GACGC 1 cut(s) 254
Csp6I GTAC 4 cut(s) 35, 130, 137, 223
CviQI GTAC 4 cut(s) 35, 130, 137, 223
DdeI CTNAG 2 cut(s) 159, 276
DpnI GATC 1 cut(s) 417
DpnII GATC 1 cut(s) 415
EaeI YGGCCR 1 cut(s) 30
Eam1104I CTCTTC 1 cut(s) 447
EarI CTCTTC 1 cut(s) 447
EciI GGCGGA 1 cut(s) 286
Eco130I CCWWGG 1 cut(s) 310
Eco24I GRGCYC 3 cut(s) 205, 284, 321
Eco47I GGWCC 3 cut(s) 337, 347, 610
Eco47III AGCGCT 1 cut(s) 209
Eco57I CTGAAG 2 cut(s) 271, 471
Eco81I CCTNAGG 1 cut(s) 276
EcoNI CCTNNNNNAGG 1 cut(s) 617
EcoRII CCWGG 1 cut(s) 612
EcoT14I CCWWGG 1 cut(s) 310
EcoT38I GRGCYC 3 cut(s) 205, 284, 321
ErhI CCWWGG 1 cut(s) 310
FaiI YATR 2 cut(s) 115, 558
Fnu4HI GCNGC 2 cut(s) 440, 552
FokI GGATG 1 cut(s) 380
FriOI GRGCYC 3 cut(s) 205, 284, 321
Fsp4HI GCNGC 2 cut(s) 440, 552
GlaI GCGC 1 cut(s) 209
GluI GCNGC 2 cut(s) 440, 552
GsaI CCCAGC 2 cut(s) 208, 384
HaeII RGCGCY 1 cut(s) 211
HaeIII GGCC 3 cut(s) 32, 203, 533
HapII CCGG 2 cut(s) 188, 608
HgaI GACGC 1 cut(s) 254
HhaI GCGC 1 cut(s) 210
Hin1I GRCGYC 1 cut(s) 246
Hin6I GCGC 1 cut(s) 208
HinP1I GCGC 1 cut(s) 208
HinfI GANTC 4 cut(s) 6, 41, 178, 306
HpaII CCGG 2 cut(s) 188, 608
Hpy166II GTNNAC 2 cut(s) 139, 223
Hpy188I TCNGA 4 cut(s) 214, 420, 526, 538
Hpy188III TCNNGA 5 cut(s) 10, 409, 445, 566, 608
Hpy8I GTNNAC 2 cut(s) 139, 223
HpyAV CCTTC 1 cut(s) 295
HpyCH4III ACNGT 2 cut(s) 129, 232
HpyCH4V TGCA 1 cut(s) 464
HpyF10VI GCNNNNNNNGC 1 cut(s) 288
HpyF3I CTNAG 2 cut(s) 159, 276
Hsp92I GRCGYC 1 cut(s) 246
HspAI GCGC 1 cut(s) 208
Kpn2I TCCGGA 1 cut(s) 607
Kzo9I GATC 1 cut(s) 415
LmnI GCTCC 3 cut(s) 173, 215, 287
Lsp1109I GCAGC 2 cut(s) 426, 538
MaeIII GTNAC 1 cut(s) 237
MalI GATC 1 cut(s) 417
MboI GATC 1 cut(s) 415
MboII GAAGA 3 cut(s) 464, 524, 596
MhlI GDGCHC 3 cut(s) 205, 284, 321
MluCI AATT 2 cut(s) 17, 98
MlyI GAGTC 2 cut(s) 187, 315
MnlI CCTC 9 cut(s) 63, 168, 184, 285, 381, 407, 496, 502, 544
MroI TCCGGA 1 cut(s) 607
MseI TTAA 1 cut(s) 474
MspI CCGG 2 cut(s) 188, 608
MspR9I CCNGG 2 cut(s) 188, 614
Mva1269I GAATGC 1 cut(s) 600
MvaI CCWGG 1 cut(s) 614
MwoI GCNNNNNNNGC 1 cut(s) 288
NciI CCSGG 1 cut(s) 188
NdeII GATC 1 cut(s) 415
NlaIV GGNNCC 3 cut(s) 185, 203, 283
PctI GAATGC 1 cut(s) 600
PfeI GAWTC 1 cut(s) 41
PkrI GCNGC 2 cut(s) 441, 553
PleI GAGTC 2 cut(s) 186, 314
PpsI GAGTC 2 cut(s) 186, 314
Psp6I CCWGG 1 cut(s) 612
PspFI CCCAGC 2 cut(s) 204, 380
PspGI CCWGG 1 cut(s) 612
PspN4I GGNNCC 3 cut(s) 185, 203, 283
PspOMI GGGCCC 1 cut(s) 201
PspPI GGNCC 5 cut(s) 201, 202, 337, 347, 610
RsaI GTAC 4 cut(s) 36, 131, 138, 224
RsaNI GTAC 4 cut(s) 35, 130, 137, 223
SaqAI TTAA 1 cut(s) 474
SatI GCNGC 2 cut(s) 440, 552
Sau3AI GATC 1 cut(s) 415
Sau96I GGNCC 5 cut(s) 201, 202, 337, 347, 610
SchI GAGTC 2 cut(s) 187, 315
ScrFI CCNGG 2 cut(s) 188, 614
SduI GDGCHC 3 cut(s) 205, 284, 321
SinI GGWCC 3 cut(s) 337, 347, 610
SmlI CTYRAG 1 cut(s) 443
SmoI CTYRAG 1 cut(s) 443
Sse9I AATT 2 cut(s) 17, 98
SsiI CCGC 1 cut(s) 297
StyD4I CCNGG 2 cut(s) 186, 612
StyI CCWWGG 1 cut(s) 310
TaaI ACNGT 2 cut(s) 129, 232
TaqI TCGA 2 cut(s) 44, 143
TaqII GACCGA 1 cut(s) 551
TasI AATT 2 cut(s) 17, 98
TatI WGTACW 1 cut(s) 136
TfiI GAWTC 1 cut(s) 41
Tru1I TTAA 1 cut(s) 474
Tru9I TTAA 1 cut(s) 474
TscAI CASTG 1 cut(s) 586
TseI GCWGC 2 cut(s) 439, 551
TspGWI ACGGA 2 cut(s) 147, 360
TspRI CASTG 1 cut(s) 586
VpaK11BI GGWCC 3 cut(s) 337, 347, 610
XagI CCTNNNNNAGG 1 cut(s) 617
XapI RAATTY 2 cut(s) 17, 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.