Rh3AG328500

CS domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0011066
Physical Location & Seq
Forward (+)
46748511 .. 46752019
3509 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG328500.1

Sequence Viewer

Length: 405 bp
ATGAGTCGGCACCCGGAGGTTCTTTGGGCGCAGCGGTCCGATAAAGTATACCTGACGGTGGCGTTACCGGATGCGAAAGACATAAGCGTCAAGTGTGAGCCGGAGGGCGTGTTCGTCTTCTCCGCCACCGGAGTCCAAGGAGAGTCCTTTCACTTCACTTTGGAGCTCTACGGACAGATACTACCTCAGGGTTGTAAAACTAAGGCTGGCTCAAGGAACATCCTCTGCTCCATCCAGAAACTAAACAAAGCTTGGTGGCAACGACTTCTCAAGACCCAAGAAAAACCTGCCCCTTACATTAAGGTCGATTGGAACAATTGGTGCGACGAGGACGACGAACCAGACTCCACTTGTATGTTCCCTTATACAAGTTTAGTTTCTCTGAGGTTTTCCTGCTTCTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00590 ko01100 map00590 map01100
Pfam Domains
Protein Families
CS

Protein Analysis

134

Amino Acids

15.4

Weight (kDa)

6.09

Isoelectric Point (pI)

46.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CS PF04969 6 - 80 4.5e-08 CS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011066)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03773 AT3G03773 AT3G03773
fragaria_vesca FvH4_1g28480
malus_domestica MD12G1008700.v1.1
prunus_persica Prupe.7G010500_v2.0.a1
pyrus_communis pycom12g00650
rosa_chinensis RchiOBHm_Chr3g0496351
rosa_laevigata RLG00000022529
rosa_multiflora Rmu_co8304491.1_g000001 Rmu_sc0002461.1_g000005
rosa_roxburghii Rroxscaffold_6G00389260
rosa_rugosa Rorug03G0281700 Rorug03G0281800 Rorug03G0281900
rosa_samantha Rh3AG328500 Rh3BG364600 Rh3CG361600 Rh3DG364600
rosa_wichuraiana Rw3G028760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 86
Acc36I ACCTGC 1 cut(s) 295
AccB1I GGYRCC 1 cut(s) 9
AccI GTMKAC 1 cut(s) 48
AciI CCGC 2 cut(s) 34, 123
AfiI CCNNNNNNNGG 1 cut(s) 58
AloI GAACNNNNNNTCC 2 cut(s) 95, 127
AluBI AGCT 2 cut(s) 166, 251
AluI AGCT 2 cut(s) 166, 251
Alw21I GWGCWC 1 cut(s) 168
ApeKI GCWGC 1 cut(s) 31
AspLEI GCGC 1 cut(s) 31
AspS9I GGNCC 1 cut(s) 36
AsuC2I CCSGG 1 cut(s) 14
AvaII GGWCC 1 cut(s) 36
AxyI CCTNAGG 1 cut(s) 186
BanI GGYRCC 1 cut(s) 9
BanII GRGCYC 1 cut(s) 168
BbsI GAAGAC 1 cut(s) 109
Bbv12I GWGCWC 1 cut(s) 168
BbvI GCAGC 1 cut(s) 43
BccI CCATC 1 cut(s) 239
BcnI CCSGG 1 cut(s) 14
BfuAI ACCTGC 1 cut(s) 295
BisI GCNGC 1 cut(s) 32
BlsI GCNGC 1 cut(s) 33
Bme1390I CCNGG 1 cut(s) 14
Bme18I GGWCC 1 cut(s) 36
BmgT120I GGNCC 1 cut(s) 36
BmiI GGNNCC 1 cut(s) 11
BmrFI CCNGG 1 cut(s) 14
BmsI GCATC 1 cut(s) 61
BpiI GAAGAC 1 cut(s) 109
BpuEI CTTGAG 2 cut(s) 196, 254
BpuMI CCSGG 1 cut(s) 14
BsaJI CCNNGG 1 cut(s) 136
BsaWI WCCGGW 2 cut(s) 67, 128
BsaXI ACNNNNNCTCC 2 cut(s) 95, 125
Bsc4I CCNNNNNNNGG 1 cut(s) 58
Bse21I CCTNAGG 1 cut(s) 186
BseDI CCNNGG 1 cut(s) 136
BseGI GGATG 3 cut(s) 76, 219, 231
BseLI CCNNNNNNNGG 1 cut(s) 58
BseMII CTCAG 2 cut(s) 200, 374
BseXI GCAGC 1 cut(s) 43
BshNI GGYRCC 1 cut(s) 9
BsiHKAI GWGCWC 1 cut(s) 168
BsiSI CCGG 4 cut(s) 14, 68, 101, 129
BslI CCNNNNNNNGG 1 cut(s) 58
Bsp1286I GDGCHC 1 cut(s) 168
BspACI CCGC 2 cut(s) 34, 123
BspCNI CTCAG 2 cut(s) 199, 375
BspLI GGNNCC 1 cut(s) 11
BspMI ACCTGC 1 cut(s) 295
BspT107I GGYRCC 1 cut(s) 9
BssECI CCNNGG 1 cut(s) 136
BssNAI GTATAC 1 cut(s) 49
BssT1I CCWWGG 1 cut(s) 136
Bst1107I GTATAC 1 cut(s) 49
Bst4CI ACNGT 1 cut(s) 58
BstC8I GCNNGC 1 cut(s) 208
BstDEI CTNAG 3 cut(s) 186, 201, 383
BstF5I GGATG 3 cut(s) 76, 219, 231
BstHHI GCGC 1 cut(s) 31
BstSCI CCNGG 1 cut(s) 12
BstV1I GCAGC 1 cut(s) 43
BstV2I GAAGAC 1 cut(s) 109
BstZ17I GTATAC 1 cut(s) 49
Bsu36I CCTNAGG 1 cut(s) 186
BtsCI GGATG 3 cut(s) 76, 219, 231
BveI ACCTGC 1 cut(s) 295
Cac8I GCNNGC 1 cut(s) 208
CfoI GCGC 1 cut(s) 31
Cfr13I GGNCC 1 cut(s) 36
CpoI CGGWCCG 1 cut(s) 36
CseI GACGC 1 cut(s) 76
CspI CGGWCCG 1 cut(s) 36
CviJI RGCY 5 cut(s) 100, 166, 206, 210, 251
CviKI_1 RGCY 5 cut(s) 100, 166, 206, 210, 251
DdeI CTNAG 3 cut(s) 186, 201, 383
DrdI GACNNNNNNGTC 1 cut(s) 86
DseDI GACNNNNNNGTC 1 cut(s) 86
EciI GGCGGA 1 cut(s) 112
Ecl136II GAGCTC 1 cut(s) 166
Eco130I CCWWGG 1 cut(s) 136
Eco24I GRGCYC 1 cut(s) 168
Eco47I GGWCC 1 cut(s) 36
Eco53kI GAGCTC 1 cut(s) 166
Eco81I CCTNAGG 1 cut(s) 186
EcoICRI GAGCTC 1 cut(s) 166
EcoT14I CCWWGG 1 cut(s) 136
EcoT38I GRGCYC 1 cut(s) 168
ErhI CCWWGG 1 cut(s) 136
FaiI YATR 4 cut(s) 49, 83, 356, 366
FblI GTMKAC 1 cut(s) 48
Fnu4HI GCNGC 1 cut(s) 32
FokI GGATG 3 cut(s) 83, 206, 218
FriOI GRGCYC 1 cut(s) 168
Fsp4HI GCNGC 1 cut(s) 32
GlaI GCGC 1 cut(s) 30
GluI GCNGC 1 cut(s) 32
HapII CCGG 4 cut(s) 14, 68, 101, 129
HgaI GACGC 1 cut(s) 76
HhaI GCGC 1 cut(s) 31
Hin6I GCGC 1 cut(s) 29
HinP1I GCGC 1 cut(s) 29
HindIII AAGCTT 1 cut(s) 249
HinfI GANTC 4 cut(s) 4, 132, 143, 344
HpaII CCGG 4 cut(s) 14, 68, 101, 129
Hpy166II GTNNAC 1 cut(s) 49
Hpy188I TCNGA 3 cut(s) 40, 384, 404
Hpy188III TCNNGA 2 cut(s) 235, 271
Hpy8I GTNNAC 1 cut(s) 49
Hpy99I CGWCG 2 cut(s) 329, 338
HpyCH4III ACNGT 1 cut(s) 58
HpyF3I CTNAG 3 cut(s) 186, 201, 383
HspAI GCGC 1 cut(s) 29
LmnI GCTCC 2 cut(s) 163, 233
Lsp1109I GCAGC 1 cut(s) 43
LweI GCATC 1 cut(s) 61
MaeIII GTNAC 1 cut(s) 63
MboII GAAGA 2 cut(s) 109, 391
MfeI CAATTG 1 cut(s) 316
MhlI GDGCHC 1 cut(s) 168
MluCI AATT 1 cut(s) 316
MlyI GAGTC 4 cut(s) 13, 141, 152, 338
MnlI CCTC 6 cut(s) 10, 97, 195, 233, 322, 378
MseI TTAA 1 cut(s) 300
MslI CAYNNNNRTG 1 cut(s) 353
MspA1I CMGCKG 1 cut(s) 34
MspI CCGG 4 cut(s) 14, 68, 101, 129
MspR9I CCNGG 1 cut(s) 14
MunI CAATTG 1 cut(s) 316
NciI CCSGG 1 cut(s) 14
NlaIV GGNNCC 1 cut(s) 11
PcsI WCGNNNNNNNCGW 1 cut(s) 333
PkrI GCNGC 1 cut(s) 33
PleI GAGTC 4 cut(s) 12, 140, 151, 338
PpsI GAGTC 4 cut(s) 12, 140, 151, 338
Psp124BI GAGCTC 1 cut(s) 168
PspN4I GGNNCC 1 cut(s) 11
PspPI GGNCC 1 cut(s) 36
RseI CAYNNNNRTG 1 cut(s) 353
Rsr2I CGGWCCG 1 cut(s) 36
RsrII CGGWCCG 1 cut(s) 36
SacI GAGCTC 1 cut(s) 168
SaqAI TTAA 1 cut(s) 300
SatI GCNGC 1 cut(s) 32
Sau96I GGNCC 1 cut(s) 36
SchI GAGTC 4 cut(s) 13, 141, 152, 338
ScrFI CCNGG 1 cut(s) 14
SduI GDGCHC 1 cut(s) 168
SetI ASST 8 cut(s) 21, 54, 168, 187, 253, 289, 306, 389
SfaNI GCATC 1 cut(s) 61
SinI GGWCC 1 cut(s) 36
SmiMI CAYNNNNRTG 1 cut(s) 353
SmlI CTYRAG 2 cut(s) 211, 269
SmoI CTYRAG 2 cut(s) 211, 269
Sse9I AATT 1 cut(s) 316
SsiI CCGC 2 cut(s) 34, 123
SstI GAGCTC 1 cut(s) 168
StyD4I CCNGG 1 cut(s) 12
StyI CCWWGG 1 cut(s) 136
TaaI ACNGT 1 cut(s) 58
TaqI TCGA 1 cut(s) 306
TasI AATT 1 cut(s) 316
Tru1I TTAA 1 cut(s) 300
Tru9I TTAA 1 cut(s) 300
TseI GCWGC 1 cut(s) 31
TspGWI ACGGA 1 cut(s) 186
VpaK11BI GGWCC 1 cut(s) 36
XmiI GTMKAC 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.