Rh3BG364600

CS domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0011066
Physical Location & Seq
Forward (+)
44862501 .. 44865055
2555 bp
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UTR
Exon/CDS
Intron
Rh3BG364600.1

Sequence Viewer

Length: 471 bp
ATGAGTCGGCACCCGGAGGTTCTTTGGGCGCAGCGGTCCGACAAAGTATACCTGACGGTGGCGTTACCGGATGCGAAAGACATAAGCGTCAAGTGTGAGCCCGAGGGCTTGTTCGCCTTCTCCGCCACCGGAGTCCAAGGAGAGTCCTTTCACTTCACTTTGGAGCTCTACGGACAGATACTACCTCAGGGTTGTAAAACTAAGGCCGGCTCAAGGAACATCCTCTGCTCCATCCAGAAACTACACAAAGCTTGGTGGCAACGACTTCTCAAGACCCAAGAAAAACCTGCCCCTTACATTAAGGTCGATTGGAACAATTGGTGCGACGAGGACGACGAACTAGACTCCACTTCTAATTTGGCCTCTGATGATGATGATGCTGATGCTGCGAATATCGGTGAAGATGATGGAAGCAGCGAAGATGAAGGAATGCTCTATCTTCCCGACCTGGAGAAGGCAAGAAAAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00590 ko01100 map00590 map01100
Pfam Domains
Protein Families
CS

Protein Analysis

156

Amino Acids

17.55

Weight (kDa)

4.65

Isoelectric Point (pI)

42.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CS PF04969 6 - 80 6.2e-08 CS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011066)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03773 AT3G03773 AT3G03773
fragaria_vesca FvH4_1g28480
malus_domestica MD12G1008700.v1.1
prunus_persica Prupe.7G010500_v2.0.a1
pyrus_communis pycom12g00650
rosa_chinensis RchiOBHm_Chr3g0496351
rosa_laevigata RLG00000022529
rosa_multiflora Rmu_co8304491.1_g000001 Rmu_sc0002461.1_g000005
rosa_roxburghii Rroxscaffold_6G00389260
rosa_rugosa Rorug03G0281700 Rorug03G0281800 Rorug03G0281900
rosa_samantha Rh3AG328500 Rh3BG364600 Rh3CG361600 Rh3DG364600
rosa_wichuraiana Rw3G028760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 86
Acc36I ACCTGC 1 cut(s) 295
AccB1I GGYRCC 1 cut(s) 9
AccI GTMKAC 1 cut(s) 48
AciI CCGC 2 cut(s) 34, 123
AfiI CCNNNNNNNGG 3 cut(s) 58, 213, 454
AjnI CCWGG 1 cut(s) 447
AluBI AGCT 2 cut(s) 166, 251
AluI AGCT 2 cut(s) 166, 251
Alw21I GWGCWC 1 cut(s) 168
Ama87I CYCGRG 1 cut(s) 101
AoxI GGCC 2 cut(s) 204, 360
ApeKI GCWGC 3 cut(s) 31, 386, 414
AspLEI GCGC 1 cut(s) 31
AspS9I GGNCC 1 cut(s) 36
AsuC2I CCSGG 1 cut(s) 14
AsuHPI GGTGA 1 cut(s) 410
AvaI CYCGRG 1 cut(s) 101
AvaII GGWCC 1 cut(s) 36
AxyI CCTNAGG 1 cut(s) 186
BanI GGYRCC 1 cut(s) 9
BanII GRGCYC 2 cut(s) 102, 168
Bbv12I GWGCWC 1 cut(s) 168
BbvI GCAGC 3 cut(s) 43, 373, 426
BccI CCATC 2 cut(s) 239, 401
BciT130I CCWGG 1 cut(s) 449
BcnI CCSGG 1 cut(s) 14
BfaI CTAG 1 cut(s) 341
BfuAI ACCTGC 1 cut(s) 295
BisI GCNGC 3 cut(s) 32, 387, 415
BlsI GCNGC 3 cut(s) 33, 388, 416
Bme1390I CCNGG 2 cut(s) 14, 449
Bme18I GGWCC 1 cut(s) 36
BmeT110I CYCGRG 1 cut(s) 101
BmgT120I GGNCC 1 cut(s) 36
BmiI GGNNCC 1 cut(s) 11
BmrFI CCNGG 2 cut(s) 14, 449
BmsI GCATC 3 cut(s) 61, 367, 373
BpmI CTGGAG 1 cut(s) 470
BpuEI CTTGAG 2 cut(s) 196, 254
BpuMI CCSGG 1 cut(s) 14
BsaJI CCNNGG 2 cut(s) 102, 136
BsaWI WCCGGW 2 cut(s) 67, 128
Bsc4I CCNNNNNNNGG 3 cut(s) 58, 213, 454
Bse118I RCCGGY 1 cut(s) 206
Bse21I CCTNAGG 1 cut(s) 186
BseBI CCWGG 1 cut(s) 449
BseDI CCNNGG 2 cut(s) 102, 136
BseGI GGATG 3 cut(s) 76, 219, 231
BseLI CCNNNNNNNGG 3 cut(s) 58, 213, 454
BseMII CTCAG 1 cut(s) 200
BseXI GCAGC 3 cut(s) 43, 373, 426
BshFI GGCC 2 cut(s) 206, 362
BshNI GGYRCC 1 cut(s) 9
BsiHKAI GWGCWC 1 cut(s) 168
BsiHKCI CYCGRG 1 cut(s) 101
BsiSI CCGG 4 cut(s) 14, 68, 129, 207
BslI CCNNNNNNNGG 3 cut(s) 58, 213, 454
BsmI GAATGC 1 cut(s) 435
BsnI GGCC 2 cut(s) 206, 362
BsoBI CYCGRG 1 cut(s) 101
Bsp1286I GDGCHC 2 cut(s) 102, 168
BspACI CCGC 2 cut(s) 34, 123
BspANI GGCC 2 cut(s) 206, 362
BspCNI CTCAG 1 cut(s) 199
BspLI GGNNCC 1 cut(s) 11
BspMI ACCTGC 1 cut(s) 295
BspT107I GGYRCC 1 cut(s) 9
BsrFI RCCGGY 1 cut(s) 206
BssAI RCCGGY 1 cut(s) 206
BssECI CCNNGG 2 cut(s) 102, 136
BssNAI GTATAC 1 cut(s) 49
BssT1I CCWWGG 1 cut(s) 136
Bst1107I GTATAC 1 cut(s) 49
Bst2UI CCWGG 1 cut(s) 449
Bst4CI ACNGT 1 cut(s) 58
BstC8I GCNNGC 1 cut(s) 208
BstDEI CTNAG 2 cut(s) 186, 201
BstENI CCTNNNNNAGG 1 cut(s) 452
BstF5I GGATG 3 cut(s) 76, 219, 231
BstHHI GCGC 1 cut(s) 31
BstMWI GCNNNNNNNGC 2 cut(s) 122, 386
BstNI CCWGG 1 cut(s) 449
BstSCI CCNGG 2 cut(s) 12, 447
BstV1I GCAGC 3 cut(s) 43, 373, 426
BstZ17I GTATAC 1 cut(s) 49
Bsu36I CCTNAGG 1 cut(s) 186
BsuRI GGCC 2 cut(s) 206, 362
BtsCI GGATG 3 cut(s) 76, 219, 231
BveI ACCTGC 1 cut(s) 295
Cac8I GCNNGC 1 cut(s) 208
CfoI GCGC 1 cut(s) 31
Cfr10I RCCGGY 1 cut(s) 206
Cfr13I GGNCC 1 cut(s) 36
CpoI CGGWCCG 1 cut(s) 36
CseI GACGC 1 cut(s) 76
CspI CGGWCCG 1 cut(s) 36
CviJI RGCY 7 cut(s) 100, 108, 166, 206, 210, 251, 362
CviKI_1 RGCY 7 cut(s) 100, 108, 166, 206, 210, 251, 362
DdeI CTNAG 2 cut(s) 186, 201
DrdI GACNNNNNNGTC 1 cut(s) 86
DseDI GACNNNNNNGTC 1 cut(s) 86
EciI GGCGGA 1 cut(s) 112
Ecl136II GAGCTC 1 cut(s) 166
Eco130I CCWWGG 1 cut(s) 136
Eco24I GRGCYC 2 cut(s) 102, 168
Eco47I GGWCC 1 cut(s) 36
Eco53kI GAGCTC 1 cut(s) 166
Eco81I CCTNAGG 1 cut(s) 186
Eco88I CYCGRG 1 cut(s) 101
EcoICRI GAGCTC 1 cut(s) 166
EcoNI CCTNNNNNAGG 1 cut(s) 452
EcoRII CCWGG 1 cut(s) 447
EcoT14I CCWWGG 1 cut(s) 136
EcoT38I GRGCYC 2 cut(s) 102, 168
ErhI CCWWGG 1 cut(s) 136
FaiI YATR 2 cut(s) 49, 83
FblI GTMKAC 1 cut(s) 48
Fnu4HI GCNGC 3 cut(s) 32, 387, 415
FokI GGATG 3 cut(s) 83, 206, 218
FriOI GRGCYC 2 cut(s) 102, 168
Fsp4HI GCNGC 3 cut(s) 32, 387, 415
FspBI CTAG 1 cut(s) 341
GlaI GCGC 1 cut(s) 30
GluI GCNGC 3 cut(s) 32, 387, 415
GsuI CTGGAG 1 cut(s) 470
HaeIII GGCC 2 cut(s) 206, 362
HapII CCGG 4 cut(s) 14, 68, 129, 207
HgaI GACGC 1 cut(s) 76
HhaI GCGC 1 cut(s) 31
Hin6I GCGC 1 cut(s) 29
HinP1I GCGC 1 cut(s) 29
HindIII AAGCTT 1 cut(s) 249
HinfI GANTC 4 cut(s) 4, 132, 143, 344
HpaII CCGG 4 cut(s) 14, 68, 129, 207
HphI GGTGA 1 cut(s) 410
Hpy166II GTNNAC 1 cut(s) 49
Hpy188I TCNGA 2 cut(s) 40, 367
Hpy188III TCNNGA 3 cut(s) 235, 271, 443
Hpy8I GTNNAC 1 cut(s) 49
Hpy99I CGWCG 2 cut(s) 329, 338
HpyAV CCTTC 3 cut(s) 127, 419, 448
HpyCH4III ACNGT 1 cut(s) 58
HpyF10VI GCNNNNNNNGC 2 cut(s) 122, 386
HpyF3I CTNAG 2 cut(s) 186, 201
HspAI GCGC 1 cut(s) 29
KroI GCCGGC 1 cut(s) 206
KroNI GCCGGC 1 cut(s) 208
LmnI GCTCC 2 cut(s) 163, 233
Lsp1109I GCAGC 3 cut(s) 43, 373, 426
LweI GCATC 3 cut(s) 61, 367, 373
MaeI CTAG 1 cut(s) 341
MaeIII GTNAC 1 cut(s) 63
MboII GAAGA 3 cut(s) 413, 431, 431
MfeI CAATTG 1 cut(s) 316
MhlI GDGCHC 2 cut(s) 102, 168
MluCI AATT 2 cut(s) 316, 355
MlyI GAGTC 4 cut(s) 13, 141, 152, 338
MmeI TCCRAC 1 cut(s) 63
MnlI CCTC 6 cut(s) 10, 97, 195, 233, 322, 373
MroNI GCCGGC 1 cut(s) 206
MseI TTAA 1 cut(s) 300
MspA1I CMGCKG 1 cut(s) 34
MspI CCGG 4 cut(s) 14, 68, 129, 207
MspR9I CCNGG 2 cut(s) 14, 449
MunI CAATTG 1 cut(s) 316
Mva1269I GAATGC 1 cut(s) 435
MvaI CCWGG 1 cut(s) 449
MwoI GCNNNNNNNGC 2 cut(s) 122, 386
NaeI GCCGGC 1 cut(s) 208
NciI CCSGG 1 cut(s) 14
NgoMIV GCCGGC 1 cut(s) 206
NlaIV GGNNCC 1 cut(s) 11
PcsI WCGNNNNNNNCGW 1 cut(s) 333
PctI GAATGC 1 cut(s) 435
PdiI GCCGGC 1 cut(s) 208
PkrI GCNGC 3 cut(s) 33, 388, 416
PleI GAGTC 4 cut(s) 12, 140, 151, 338
PpsI GAGTC 4 cut(s) 12, 140, 151, 338
Psp124BI GAGCTC 1 cut(s) 168
Psp6I CCWGG 1 cut(s) 447
PspGI CCWGG 1 cut(s) 447
PspN4I GGNNCC 1 cut(s) 11
PspPI GGNCC 1 cut(s) 36
Rsr2I CGGWCCG 1 cut(s) 36
RsrII CGGWCCG 1 cut(s) 36
SacI GAGCTC 1 cut(s) 168
SaqAI TTAA 1 cut(s) 300
SatI GCNGC 3 cut(s) 32, 387, 415
Sau96I GGNCC 1 cut(s) 36
SchI GAGTC 4 cut(s) 13, 141, 152, 338
ScrFI CCNGG 2 cut(s) 14, 449
SduI GDGCHC 2 cut(s) 102, 168
SetI ASST 8 cut(s) 21, 54, 168, 187, 253, 289, 306, 450
SfaNI GCATC 3 cut(s) 61, 367, 373
SinI GGWCC 1 cut(s) 36
SmlI CTYRAG 2 cut(s) 211, 269
SmoI CTYRAG 2 cut(s) 211, 269
Sse9I AATT 2 cut(s) 316, 355
SsiI CCGC 2 cut(s) 34, 123
SspMI CTAG 1 cut(s) 341
SstI GAGCTC 1 cut(s) 168
StyD4I CCNGG 2 cut(s) 12, 447
StyI CCWWGG 1 cut(s) 136
TaaI ACNGT 1 cut(s) 58
TaqI TCGA 1 cut(s) 306
TasI AATT 2 cut(s) 316, 355
Tru1I TTAA 1 cut(s) 300
Tru9I TTAA 1 cut(s) 300
TseI GCWGC 3 cut(s) 31, 386, 414
TspDTI ATGAA 1 cut(s) 438
TspGWI ACGGA 1 cut(s) 186
VpaK11BI GGWCC 1 cut(s) 36
XagI CCTNNNNNAGG 1 cut(s) 452
XcmI CCANNNNNNNNNTGG 1 cut(s) 355
XmiI GTMKAC 1 cut(s) 48
XspI CTAG 1 cut(s) 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.