Rmu_sc0002461.1_g000005

CS domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002461.1
OG0011066
Physical Location & Seq
Forward (+)
21266 .. 23554
2289 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002461.1_g000005.1.cds

Sequence Viewer

Length: 483 bp
atggttggcataagcgactgtttctcttatggggcgcgagggtttctatacctgacggtggcgttaccggatgcgaaagacataagcgtcaagtgtgagcccgagggcgtgttcgccttctccgccaccggagtccaaggagagtcctttcacttcactttggagctctacggacagatactgcctcagggttgtaaaactaaggctggctcaaggaacatcctctgctccatccagaaactacacaaaggttggtggcaacgacttctcaagacccaagaaaaacctgccccttacattaaggtcgattggaacaattggtgcgacgaggacgacgaactagactccacttctaatttggcctctgatgatgatgatgatgatgatggtgatgatgctgcgaatatcggtgaagatgatggaagcagcgaagatgaaggaatgctctatcttcccgacctggagaaggcaagaaaaaaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00590 ko01100 map00590 map01100
Pfam Domains
Protein Families
CS

Protein Analysis

160

Amino Acids

17.75

Weight (kDa)

4.31

Isoelectric Point (pI)

31.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011066)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03773 AT3G03773 AT3G03773
fragaria_vesca FvH4_1g28480
malus_domestica MD12G1008700.v1.1
prunus_persica Prupe.7G010500_v2.0.a1
pyrus_communis pycom12g00650
rosa_chinensis RchiOBHm_Chr3g0496351
rosa_laevigata RLG00000022529
rosa_multiflora Rmu_co8304491.1_g000001 Rmu_sc0002461.1_g000005
rosa_roxburghii Rroxscaffold_6G00389260
rosa_rugosa Rorug03G0281700 Rorug03G0281800 Rorug03G0281900
rosa_samantha Rh3AG328500 Rh3BG364600 Rh3CG361600 Rh3DG364600
rosa_wichuraiana Rw3G028760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 86
Acc36I ACCTGC 1 cut(s) 295
AccII CGCG 1 cut(s) 37
AciI CCGC 1 cut(s) 123
AfiI CCNNNNNNNGG 2 cut(s) 58, 466
AjnI CCWGG 1 cut(s) 459
AluBI AGCT 1 cut(s) 166
AluI AGCT 1 cut(s) 166
Alw21I GWGCWC 1 cut(s) 168
AlwNI CAGNNNCTG 1 cut(s) 181
Ama87I CYCGRG 1 cut(s) 101
AoxI GGCC 1 cut(s) 360
ApeKI GCWGC 2 cut(s) 398, 426
AspLEI GCGC 1 cut(s) 37
AsuHPI GGTGA 2 cut(s) 401, 422
AvaI CYCGRG 1 cut(s) 101
AxyI CCTNAGG 1 cut(s) 186
BanII GRGCYC 2 cut(s) 102, 168
Bbv12I GWGCWC 1 cut(s) 168
BbvI GCAGC 2 cut(s) 385, 438
BccI CCATC 3 cut(s) 239, 380, 413
BciT130I CCWGG 1 cut(s) 461
BfaI CTAG 1 cut(s) 341
BfuAI ACCTGC 1 cut(s) 295
BisI GCNGC 2 cut(s) 399, 427
BlsI GCNGC 2 cut(s) 400, 428
Bme1390I CCNGG 1 cut(s) 461
BmeT110I CYCGRG 1 cut(s) 101
BmrFI CCNGG 1 cut(s) 461
BmsI GCATC 2 cut(s) 61, 385
BpmI CTGGAG 1 cut(s) 482
BpuEI CTTGAG 2 cut(s) 196, 254
BsaJI CCNNGG 2 cut(s) 102, 136
BsaWI WCCGGW 2 cut(s) 67, 128
Bsc4I CCNNNNNNNGG 2 cut(s) 58, 466
Bse21I CCTNAGG 1 cut(s) 186
BseBI CCWGG 1 cut(s) 461
BseDI CCNNGG 2 cut(s) 102, 136
BseGI GGATG 3 cut(s) 76, 219, 231
BseLI CCNNNNNNNGG 2 cut(s) 58, 466
BseMII CTCAG 1 cut(s) 200
BseXI GCAGC 2 cut(s) 385, 438
Bsh1236I CGCG 1 cut(s) 37
BshFI GGCC 1 cut(s) 362
BsiHKAI GWGCWC 1 cut(s) 168
BsiHKCI CYCGRG 1 cut(s) 101
BsiSI CCGG 2 cut(s) 68, 129
BslI CCNNNNNNNGG 2 cut(s) 58, 466
BsmI GAATGC 1 cut(s) 447
BsnI GGCC 1 cut(s) 362
BsoBI CYCGRG 1 cut(s) 101
Bsp1286I GDGCHC 2 cut(s) 102, 168
BspACI CCGC 1 cut(s) 123
BspANI GGCC 1 cut(s) 362
BspCNI CTCAG 1 cut(s) 199
BspFNI CGCG 1 cut(s) 37
BspMI ACCTGC 1 cut(s) 295
BssECI CCNNGG 2 cut(s) 102, 136
BssT1I CCWWGG 1 cut(s) 136
Bst2UI CCWGG 1 cut(s) 461
Bst4CI ACNGT 2 cut(s) 20, 58
BstC8I GCNNGC 1 cut(s) 208
BstDEI CTNAG 2 cut(s) 186, 201
BstENI CCTNNNNNAGG 1 cut(s) 464
BstF5I GGATG 3 cut(s) 76, 219, 231
BstFNI CGCG 1 cut(s) 37
BstHHI GCGC 1 cut(s) 37
BstMWI GCNNNNNNNGC 1 cut(s) 122
BstNI CCWGG 1 cut(s) 461
BstSCI CCNGG 1 cut(s) 459
BstUI CGCG 1 cut(s) 37
BstV1I GCAGC 2 cut(s) 385, 438
Bsu36I CCTNAGG 1 cut(s) 186
BsuRI GGCC 1 cut(s) 362
BtsCI GGATG 3 cut(s) 76, 219, 231
BveI ACCTGC 1 cut(s) 295
Cac8I GCNNGC 1 cut(s) 208
CaiI CAGNNNCTG 1 cut(s) 181
CfoI GCGC 1 cut(s) 37
CseI GACGC 1 cut(s) 76
CviJI RGCY 5 cut(s) 100, 166, 206, 210, 362
CviKI_1 RGCY 5 cut(s) 100, 166, 206, 210, 362
DdeI CTNAG 2 cut(s) 186, 201
DrdI GACNNNNNNGTC 1 cut(s) 86
DseDI GACNNNNNNGTC 1 cut(s) 86
EciI GGCGGA 1 cut(s) 112
Ecl136II GAGCTC 1 cut(s) 166
Eco130I CCWWGG 1 cut(s) 136
Eco24I GRGCYC 2 cut(s) 102, 168
Eco53kI GAGCTC 1 cut(s) 166
Eco81I CCTNAGG 1 cut(s) 186
Eco88I CYCGRG 1 cut(s) 101
EcoICRI GAGCTC 1 cut(s) 166
EcoNI CCTNNNNNAGG 1 cut(s) 464
EcoRII CCWGG 1 cut(s) 459
EcoT14I CCWWGG 1 cut(s) 136
EcoT38I GRGCYC 2 cut(s) 102, 168
ErhI CCWWGG 1 cut(s) 136
FaiI YATR 4 cut(s) 11, 30, 49, 83
Fnu4HI GCNGC 2 cut(s) 399, 427
FokI GGATG 3 cut(s) 83, 206, 218
FriOI GRGCYC 2 cut(s) 102, 168
Fsp4HI GCNGC 2 cut(s) 399, 427
FspBI CTAG 1 cut(s) 341
GlaI GCGC 1 cut(s) 36
GluI GCNGC 2 cut(s) 399, 427
GsuI CTGGAG 1 cut(s) 482
HaeIII GGCC 1 cut(s) 362
HapII CCGG 2 cut(s) 68, 129
HgaI GACGC 1 cut(s) 76
HhaI GCGC 1 cut(s) 37
Hin6I GCGC 1 cut(s) 35
HinP1I GCGC 1 cut(s) 35
HinfI GANTC 3 cut(s) 132, 143, 344
HpaII CCGG 2 cut(s) 68, 129
HphI GGTGA 2 cut(s) 401, 422
Hpy188I TCNGA 1 cut(s) 367
Hpy188III TCNNGA 3 cut(s) 235, 271, 455
Hpy99I CGWCG 2 cut(s) 329, 338
HpyAV CCTTC 3 cut(s) 127, 431, 460
HpyCH4III ACNGT 2 cut(s) 20, 58
HpyF10VI GCNNNNNNNGC 1 cut(s) 122
HpyF3I CTNAG 2 cut(s) 186, 201
HspAI GCGC 1 cut(s) 35
LmnI GCTCC 2 cut(s) 163, 233
LpnPI CCDG 9 cut(s) 65, 81, 142, 173, 192, 248, 300, 446, 473
Lsp1109I GCAGC 2 cut(s) 385, 438
LweI GCATC 2 cut(s) 61, 385
MaeI CTAG 1 cut(s) 341
MaeIII GTNAC 1 cut(s) 63
MboII GAAGA 3 cut(s) 425, 443, 443
MfeI CAATTG 1 cut(s) 316
MhlI GDGCHC 2 cut(s) 102, 168
MluCI AATT 2 cut(s) 316, 355
MlyI GAGTC 3 cut(s) 141, 152, 338
MnlI CCTC 6 cut(s) 32, 97, 195, 233, 322, 373
MseI TTAA 1 cut(s) 300
MspI CCGG 2 cut(s) 68, 129
MspR9I CCNGG 1 cut(s) 461
MunI CAATTG 1 cut(s) 316
Mva1269I GAATGC 1 cut(s) 447
MvaI CCWGG 1 cut(s) 461
MvnI CGCG 1 cut(s) 37
MwoI GCNNNNNNNGC 1 cut(s) 122
PcsI WCGNNNNNNNCGW 1 cut(s) 333
PctI GAATGC 1 cut(s) 447
PkrI GCNGC 2 cut(s) 400, 428
PleI GAGTC 3 cut(s) 140, 151, 338
PpsI GAGTC 3 cut(s) 140, 151, 338
Psp124BI GAGCTC 1 cut(s) 168
Psp6I CCWGG 1 cut(s) 459
PspGI CCWGG 1 cut(s) 459
PstNI CAGNNNCTG 1 cut(s) 181
SacI GAGCTC 1 cut(s) 168
SaqAI TTAA 1 cut(s) 300
SatI GCNGC 2 cut(s) 399, 427
SchI GAGTC 3 cut(s) 141, 152, 338
ScrFI CCNGG 1 cut(s) 461
SduI GDGCHC 2 cut(s) 102, 168
SetI ASST 6 cut(s) 54, 168, 253, 289, 306, 462
SfaNI GCATC 2 cut(s) 61, 385
SmlI CTYRAG 2 cut(s) 211, 269
SmoI CTYRAG 2 cut(s) 211, 269
Sse9I AATT 2 cut(s) 316, 355
SsiI CCGC 1 cut(s) 123
SspMI CTAG 1 cut(s) 341
SstI GAGCTC 1 cut(s) 168
StyD4I CCNGG 1 cut(s) 459
StyI CCWWGG 1 cut(s) 136
TaaI ACNGT 2 cut(s) 20, 58
TaqI TCGA 1 cut(s) 306
TasI AATT 2 cut(s) 316, 355
Tru1I TTAA 1 cut(s) 300
Tru9I TTAA 1 cut(s) 300
TseI GCWGC 2 cut(s) 398, 426
TspDTI ATGAA 1 cut(s) 450
TspGWI ACGGA 1 cut(s) 186
XagI CCTNNNNNAGG 1 cut(s) 464
XcmI CCANNNNNNNNNTGG 1 cut(s) 355
XspI CTAG 1 cut(s) 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.