Rmu_co8304491.1_g000001

CS domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8304491.1
OG0011066
Physical Location & Seq
Reverse (-)
1 .. 903
903 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8304491.1_g000001.1.cds

Sequence Viewer

Length: 443 bp
tcggcacccggaggttctttgggcgcagcggtccgatagagtatacctgacggtggcgttaccggatgcgaaagacataagcgtcaagtgtgagcccgagggcgtgttcgccttctccgccaccggagtccaaggagagtcctttcacttcactttggagctctacggacagatactgcctcagggttgtaaaactaaggctggctcaaggaacatcctctgctccatccagaaactacacaaaggttggtggcaacgacttctcaagacccaagaaaaacctgccccttacattaaggtcgattggaacaattggtgcgacgaggacgacgaactagactccacttctaatttggcctctgatgatgatgatgatgatgatggtgatgatgctgcgaatatcggtgaagatgatggaagcagcgaagatgaaggaatgctct
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00590 ko01100 map00590 map01100
Pfam Domains
Protein Families
CS

Protein Analysis

147

Amino Acids

16.44

Weight (kDa)

4.28

Isoelectric Point (pI)

40.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011066)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03773 AT3G03773 AT3G03773
fragaria_vesca FvH4_1g28480
malus_domestica MD12G1008700.v1.1
prunus_persica Prupe.7G010500_v2.0.a1
pyrus_communis pycom12g00650
rosa_chinensis RchiOBHm_Chr3g0496351
rosa_laevigata RLG00000022529
rosa_multiflora Rmu_co8304491.1_g000001 Rmu_sc0002461.1_g000005
rosa_roxburghii Rroxscaffold_6G00389260
rosa_rugosa Rorug03G0281700 Rorug03G0281800 Rorug03G0281900
rosa_samantha Rh3AG328500 Rh3BG364600 Rh3CG361600 Rh3DG364600
rosa_wichuraiana Rw3G028760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 81
Acc36I ACCTGC 1 cut(s) 290
AccB1I GGYRCC 1 cut(s) 4
AccI GTMKAC 1 cut(s) 43
AciI CCGC 2 cut(s) 29, 118
AfiI CCNNNNNNNGG 1 cut(s) 53
AluBI AGCT 1 cut(s) 161
AluI AGCT 1 cut(s) 161
Alw21I GWGCWC 1 cut(s) 163
AlwNI CAGNNNCTG 1 cut(s) 176
Ama87I CYCGRG 1 cut(s) 96
AoxI GGCC 1 cut(s) 355
ApeKI GCWGC 3 cut(s) 26, 393, 421
AspLEI GCGC 1 cut(s) 26
AspS9I GGNCC 1 cut(s) 31
AsuC2I CCSGG 1 cut(s) 9
AsuHPI GGTGA 2 cut(s) 396, 417
AvaI CYCGRG 1 cut(s) 96
AvaII GGWCC 1 cut(s) 31
AxyI CCTNAGG 1 cut(s) 181
BanI GGYRCC 1 cut(s) 4
BanII GRGCYC 2 cut(s) 97, 163
Bbv12I GWGCWC 1 cut(s) 163
BbvI GCAGC 3 cut(s) 38, 380, 433
BccI CCATC 3 cut(s) 234, 375, 408
BcnI CCSGG 1 cut(s) 9
BfaI CTAG 1 cut(s) 336
BfuAI ACCTGC 1 cut(s) 290
BisI GCNGC 3 cut(s) 27, 394, 422
BlsI GCNGC 3 cut(s) 28, 395, 423
Bme1390I CCNGG 1 cut(s) 9
Bme18I GGWCC 1 cut(s) 31
BmeT110I CYCGRG 1 cut(s) 96
BmgT120I GGNCC 1 cut(s) 31
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 9
BmsI GCATC 2 cut(s) 56, 380
BpuEI CTTGAG 2 cut(s) 191, 249
BpuMI CCSGG 1 cut(s) 9
BsaJI CCNNGG 2 cut(s) 97, 131
BsaWI WCCGGW 2 cut(s) 62, 123
Bsc4I CCNNNNNNNGG 1 cut(s) 53
Bse21I CCTNAGG 1 cut(s) 181
BseDI CCNNGG 2 cut(s) 97, 131
BseGI GGATG 3 cut(s) 71, 214, 226
BseLI CCNNNNNNNGG 1 cut(s) 53
BseMII CTCAG 1 cut(s) 195
BseXI GCAGC 3 cut(s) 38, 380, 433
BshFI GGCC 1 cut(s) 357
BshNI GGYRCC 1 cut(s) 4
BsiHKAI GWGCWC 1 cut(s) 163
BsiHKCI CYCGRG 1 cut(s) 96
BsiSI CCGG 3 cut(s) 9, 63, 124
BslI CCNNNNNNNGG 1 cut(s) 53
BsmI GAATGC 1 cut(s) 442
BsnI GGCC 1 cut(s) 357
BsoBI CYCGRG 1 cut(s) 96
Bsp1286I GDGCHC 2 cut(s) 97, 163
BspACI CCGC 2 cut(s) 29, 118
BspANI GGCC 1 cut(s) 357
BspCNI CTCAG 1 cut(s) 194
BspLI GGNNCC 1 cut(s) 6
BspMI ACCTGC 1 cut(s) 290
BspT107I GGYRCC 1 cut(s) 4
BssECI CCNNGG 2 cut(s) 97, 131
BssNAI GTATAC 1 cut(s) 44
BssT1I CCWWGG 1 cut(s) 131
Bst1107I GTATAC 1 cut(s) 44
Bst4CI ACNGT 1 cut(s) 53
BstC8I GCNNGC 1 cut(s) 203
BstDEI CTNAG 2 cut(s) 181, 196
BstF5I GGATG 3 cut(s) 71, 214, 226
BstHHI GCGC 1 cut(s) 26
BstMWI GCNNNNNNNGC 1 cut(s) 117
BstSCI CCNGG 1 cut(s) 7
BstV1I GCAGC 3 cut(s) 38, 380, 433
BstZ17I GTATAC 1 cut(s) 44
Bsu36I CCTNAGG 1 cut(s) 181
BsuRI GGCC 1 cut(s) 357
BtsCI GGATG 3 cut(s) 71, 214, 226
BveI ACCTGC 1 cut(s) 290
Cac8I GCNNGC 1 cut(s) 203
CaiI CAGNNNCTG 1 cut(s) 176
CfoI GCGC 1 cut(s) 26
Cfr13I GGNCC 1 cut(s) 31
CpoI CGGWCCG 1 cut(s) 31
CseI GACGC 1 cut(s) 71
CspI CGGWCCG 1 cut(s) 31
CviJI RGCY 5 cut(s) 95, 161, 201, 205, 357
CviKI_1 RGCY 5 cut(s) 95, 161, 201, 205, 357
DdeI CTNAG 2 cut(s) 181, 196
DrdI GACNNNNNNGTC 1 cut(s) 81
DseDI GACNNNNNNGTC 1 cut(s) 81
EciI GGCGGA 1 cut(s) 107
Ecl136II GAGCTC 1 cut(s) 161
Eco130I CCWWGG 1 cut(s) 131
Eco24I GRGCYC 2 cut(s) 97, 163
Eco47I GGWCC 1 cut(s) 31
Eco53kI GAGCTC 1 cut(s) 161
Eco81I CCTNAGG 1 cut(s) 181
Eco88I CYCGRG 1 cut(s) 96
EcoICRI GAGCTC 1 cut(s) 161
EcoT14I CCWWGG 1 cut(s) 131
EcoT38I GRGCYC 2 cut(s) 97, 163
ErhI CCWWGG 1 cut(s) 131
FaiI YATR 2 cut(s) 44, 78
FblI GTMKAC 1 cut(s) 43
Fnu4HI GCNGC 3 cut(s) 27, 394, 422
FokI GGATG 3 cut(s) 78, 201, 213
FriOI GRGCYC 2 cut(s) 97, 163
Fsp4HI GCNGC 3 cut(s) 27, 394, 422
FspBI CTAG 1 cut(s) 336
GlaI GCGC 1 cut(s) 25
GluI GCNGC 3 cut(s) 27, 394, 422
HaeIII GGCC 1 cut(s) 357
HapII CCGG 3 cut(s) 9, 63, 124
HgaI GACGC 1 cut(s) 71
HhaI GCGC 1 cut(s) 26
Hin6I GCGC 1 cut(s) 24
HinP1I GCGC 1 cut(s) 24
HinfI GANTC 3 cut(s) 127, 138, 339
HpaII CCGG 3 cut(s) 9, 63, 124
HphI GGTGA 2 cut(s) 396, 417
Hpy166II GTNNAC 1 cut(s) 44
Hpy188I TCNGA 2 cut(s) 35, 362
Hpy188III TCNNGA 2 cut(s) 230, 266
Hpy8I GTNNAC 1 cut(s) 44
Hpy99I CGWCG 2 cut(s) 324, 333
HpyAV CCTTC 2 cut(s) 122, 426
HpyCH4III ACNGT 1 cut(s) 53
HpyF10VI GCNNNNNNNGC 1 cut(s) 117
HpyF3I CTNAG 2 cut(s) 181, 196
HspAI GCGC 1 cut(s) 24
LmnI GCTCC 2 cut(s) 158, 228
LpnPI CCDG 8 cut(s) 22, 60, 76, 137, 168, 187, 243, 295
Lsp1109I GCAGC 3 cut(s) 38, 380, 433
LweI GCATC 2 cut(s) 56, 380
MaeI CTAG 1 cut(s) 336
MaeIII GTNAC 1 cut(s) 58
MboII GAAGA 2 cut(s) 420, 438
MfeI CAATTG 1 cut(s) 311
MhlI GDGCHC 2 cut(s) 97, 163
MluCI AATT 2 cut(s) 311, 350
MlyI GAGTC 3 cut(s) 136, 147, 333
MnlI CCTC 6 cut(s) 5, 92, 190, 228, 317, 368
MseI TTAA 1 cut(s) 295
MspA1I CMGCKG 1 cut(s) 29
MspI CCGG 3 cut(s) 9, 63, 124
MspR9I CCNGG 1 cut(s) 9
MunI CAATTG 1 cut(s) 311
Mva1269I GAATGC 1 cut(s) 442
MwoI GCNNNNNNNGC 1 cut(s) 117
NciI CCSGG 1 cut(s) 9
NlaIV GGNNCC 1 cut(s) 6
PcsI WCGNNNNNNNCGW 1 cut(s) 328
PctI GAATGC 1 cut(s) 442
PkrI GCNGC 3 cut(s) 28, 395, 423
PleI GAGTC 3 cut(s) 135, 146, 333
PpsI GAGTC 3 cut(s) 135, 146, 333
Psp124BI GAGCTC 1 cut(s) 163
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 31
PstNI CAGNNNCTG 1 cut(s) 176
Rsr2I CGGWCCG 1 cut(s) 31
RsrII CGGWCCG 1 cut(s) 31
SacI GAGCTC 1 cut(s) 163
SaqAI TTAA 1 cut(s) 295
SatI GCNGC 3 cut(s) 27, 394, 422
Sau96I GGNCC 1 cut(s) 31
SchI GAGTC 3 cut(s) 136, 147, 333
ScrFI CCNGG 1 cut(s) 9
SduI GDGCHC 2 cut(s) 97, 163
SetI ASST 6 cut(s) 16, 49, 163, 248, 284, 301
SfaNI GCATC 2 cut(s) 56, 380
SinI GGWCC 1 cut(s) 31
SmlI CTYRAG 2 cut(s) 206, 264
SmoI CTYRAG 2 cut(s) 206, 264
Sse9I AATT 2 cut(s) 311, 350
SsiI CCGC 2 cut(s) 29, 118
SspMI CTAG 1 cut(s) 336
SstI GAGCTC 1 cut(s) 163
StyD4I CCNGG 1 cut(s) 7
StyI CCWWGG 1 cut(s) 131
TaaI ACNGT 1 cut(s) 53
TaqI TCGA 1 cut(s) 301
TasI AATT 2 cut(s) 311, 350
Tru1I TTAA 1 cut(s) 295
Tru9I TTAA 1 cut(s) 295
TseI GCWGC 3 cut(s) 26, 393, 421
TspGWI ACGGA 1 cut(s) 181
VpaK11BI GGWCC 1 cut(s) 31
XcmI CCANNNNNNNNNTGG 1 cut(s) 350
XmiI GTMKAC 1 cut(s) 43
XspI CTAG 1 cut(s) 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.