Rh3DG364600

CS domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0011066
Physical Location & Seq
Forward (+)
45512555 .. 45513277
723 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG364600.1

Sequence Viewer

Length: 453 bp
ATGAGTCGGCACCCGGAGGTTCTTTGGGCGCAGCGGTCCGACAAAGTATACCTGACGGTGGCGTTACCGGATGCAAAAGACATAAGCGTCAAGTGTGAGCCCGAGGGCGTGTTCGCCTTCTCCGCCACCGGAGTCCAAGGAGAGTCCTTTCACTTCACTTTGGAGCTCTACGGACAGATACTGCCTCAGGGTTGTAAAACTAAGGCTGGCTCAAGGAACATCCTCTGCTCCATCCAGAAACTACACAAAGCTTGGTGGCAACGACTTCTCAAGACCCAAGAAAAACCTGCCCCTTACATTAAGGTCGATTGGAACAATTGGTGCGACGAGGACGACGAACTAGACTCCACTTCTAATTTGGCCTCTGATGATGATGATGATGATACTGCTGCTGCGGTAAATTCACATCCTATATCATTTAAAATAATGGATTATGTTCACATAATCAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00590 ko01100 map00590 map01100
Pfam Domains
Protein Families
CS

Protein Analysis

150

Amino Acids

16.94

Weight (kDa)

4.98

Isoelectric Point (pI)

35.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CS PF04969 6 - 80 5.8e-08 CS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011066)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03773 AT3G03773 AT3G03773
fragaria_vesca FvH4_1g28480
malus_domestica MD12G1008700.v1.1
prunus_persica Prupe.7G010500_v2.0.a1
pyrus_communis pycom12g00650
rosa_chinensis RchiOBHm_Chr3g0496351
rosa_laevigata RLG00000022529
rosa_multiflora Rmu_co8304491.1_g000001 Rmu_sc0002461.1_g000005
rosa_roxburghii Rroxscaffold_6G00389260
rosa_rugosa Rorug03G0281700 Rorug03G0281800 Rorug03G0281900
rosa_samantha Rh3AG328500 Rh3BG364600 Rh3CG361600 Rh3DG364600
rosa_wichuraiana Rw3G028760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 86
Acc36I ACCTGC 1 cut(s) 295
AccB1I GGYRCC 1 cut(s) 9
AccI GTMKAC 1 cut(s) 48
AciI CCGC 3 cut(s) 34, 123, 395
AcsI RAATTY 1 cut(s) 400
AfiI CCNNNNNNNGG 1 cut(s) 58
AluBI AGCT 3 cut(s) 166, 251, 450
AluI AGCT 3 cut(s) 166, 251, 450
Alw21I GWGCWC 1 cut(s) 168
AlwNI CAGNNNCTG 1 cut(s) 181
Ama87I CYCGRG 1 cut(s) 101
AoxI GGCC 1 cut(s) 360
ApeKI GCWGC 3 cut(s) 31, 389, 392
ApoI RAATTY 1 cut(s) 400
AspLEI GCGC 1 cut(s) 31
AspS9I GGNCC 1 cut(s) 36
AsuC2I CCSGG 1 cut(s) 14
AvaI CYCGRG 1 cut(s) 101
AvaII GGWCC 1 cut(s) 36
AxyI CCTNAGG 1 cut(s) 186
BanI GGYRCC 1 cut(s) 9
BanII GRGCYC 2 cut(s) 102, 168
Bbv12I GWGCWC 1 cut(s) 168
BbvI GCAGC 3 cut(s) 43, 376, 379
BccI CCATC 1 cut(s) 239
BcnI CCSGG 1 cut(s) 14
BfaI CTAG 1 cut(s) 341
BfuAI ACCTGC 1 cut(s) 295
BisI GCNGC 3 cut(s) 32, 390, 393
BlsI GCNGC 3 cut(s) 33, 391, 394
Bme1390I CCNGG 1 cut(s) 14
Bme18I GGWCC 1 cut(s) 36
BmeT110I CYCGRG 1 cut(s) 101
BmgT120I GGNCC 1 cut(s) 36
BmiI GGNNCC 1 cut(s) 11
BmrFI CCNGG 1 cut(s) 14
BmsI GCATC 1 cut(s) 61
BpuEI CTTGAG 2 cut(s) 196, 254
BpuMI CCSGG 1 cut(s) 14
BsaJI CCNNGG 2 cut(s) 102, 136
BsaWI WCCGGW 2 cut(s) 67, 128
Bsc4I CCNNNNNNNGG 1 cut(s) 58
Bse21I CCTNAGG 1 cut(s) 186
BseDI CCNNGG 2 cut(s) 102, 136
BseGI GGATG 4 cut(s) 76, 219, 231, 406
BseLI CCNNNNNNNGG 1 cut(s) 58
BseMII CTCAG 1 cut(s) 200
BseXI GCAGC 3 cut(s) 43, 376, 379
BshFI GGCC 1 cut(s) 362
BshNI GGYRCC 1 cut(s) 9
BsiHKAI GWGCWC 1 cut(s) 168
BsiHKCI CYCGRG 1 cut(s) 101
BsiSI CCGG 3 cut(s) 14, 68, 129
BslI CCNNNNNNNGG 1 cut(s) 58
BsnI GGCC 1 cut(s) 362
BsoBI CYCGRG 1 cut(s) 101
Bsp1286I GDGCHC 2 cut(s) 102, 168
BspACI CCGC 3 cut(s) 34, 123, 395
BspANI GGCC 1 cut(s) 362
BspCNI CTCAG 1 cut(s) 199
BspLI GGNNCC 1 cut(s) 11
BspMI ACCTGC 1 cut(s) 295
BspT107I GGYRCC 1 cut(s) 9
BssECI CCNNGG 2 cut(s) 102, 136
BssNAI GTATAC 1 cut(s) 49
BssT1I CCWWGG 1 cut(s) 136
Bst1107I GTATAC 1 cut(s) 49
Bst4CI ACNGT 1 cut(s) 58
BstC8I GCNNGC 1 cut(s) 208
BstDEI CTNAG 2 cut(s) 186, 201
BstF5I GGATG 4 cut(s) 76, 219, 231, 406
BstHHI GCGC 1 cut(s) 31
BstMWI GCNNNNNNNGC 1 cut(s) 122
BstSCI CCNGG 1 cut(s) 12
BstV1I GCAGC 3 cut(s) 43, 376, 379
BstZ17I GTATAC 1 cut(s) 49
Bsu36I CCTNAGG 1 cut(s) 186
BsuRI GGCC 1 cut(s) 362
BtsCI GGATG 4 cut(s) 76, 219, 231, 406
BveI ACCTGC 1 cut(s) 295
Cac8I GCNNGC 1 cut(s) 208
CaiI CAGNNNCTG 1 cut(s) 181
CfoI GCGC 1 cut(s) 31
Cfr13I GGNCC 1 cut(s) 36
CpoI CGGWCCG 1 cut(s) 36
CseI GACGC 1 cut(s) 76
CspI CGGWCCG 1 cut(s) 36
CviJI RGCY 7 cut(s) 100, 166, 206, 210, 251, 362, 450
CviKI_1 RGCY 7 cut(s) 100, 166, 206, 210, 251, 362, 450
DdeI CTNAG 2 cut(s) 186, 201
DraI TTTAAA 1 cut(s) 421
DrdI GACNNNNNNGTC 1 cut(s) 86
DseDI GACNNNNNNGTC 1 cut(s) 86
EciI GGCGGA 1 cut(s) 112
Ecl136II GAGCTC 1 cut(s) 166
Eco130I CCWWGG 1 cut(s) 136
Eco24I GRGCYC 2 cut(s) 102, 168
Eco47I GGWCC 1 cut(s) 36
Eco53kI GAGCTC 1 cut(s) 166
Eco81I CCTNAGG 1 cut(s) 186
Eco88I CYCGRG 1 cut(s) 101
EcoICRI GAGCTC 1 cut(s) 166
EcoT14I CCWWGG 1 cut(s) 136
EcoT38I GRGCYC 2 cut(s) 102, 168
ErhI CCWWGG 1 cut(s) 136
FaiI YATR 5 cut(s) 49, 83, 413, 435, 443
FblI GTMKAC 1 cut(s) 48
Fnu4HI GCNGC 3 cut(s) 32, 390, 393
FokI GGATG 4 cut(s) 83, 206, 218, 393
FriOI GRGCYC 2 cut(s) 102, 168
Fsp4HI GCNGC 3 cut(s) 32, 390, 393
FspBI CTAG 1 cut(s) 341
GlaI GCGC 1 cut(s) 30
GluI GCNGC 3 cut(s) 32, 390, 393
HaeIII GGCC 1 cut(s) 362
HapII CCGG 3 cut(s) 14, 68, 129
HgaI GACGC 1 cut(s) 76
HhaI GCGC 1 cut(s) 31
Hin6I GCGC 1 cut(s) 29
HinP1I GCGC 1 cut(s) 29
HindIII AAGCTT 1 cut(s) 249
HinfI GANTC 4 cut(s) 4, 132, 143, 344
HpaII CCGG 3 cut(s) 14, 68, 129
Hpy166II GTNNAC 2 cut(s) 49, 439
Hpy188I TCNGA 2 cut(s) 40, 367
Hpy188III TCNNGA 2 cut(s) 235, 271
Hpy8I GTNNAC 2 cut(s) 49, 439
Hpy99I CGWCG 2 cut(s) 329, 338
HpyAV CCTTC 1 cut(s) 127
HpyCH4III ACNGT 1 cut(s) 58
HpyCH4V TGCA 1 cut(s) 74
HpyF10VI GCNNNNNNNGC 1 cut(s) 122
HpyF3I CTNAG 2 cut(s) 186, 201
HspAI GCGC 1 cut(s) 29
LmnI GCTCC 2 cut(s) 163, 233
LpnPI CCDG 8 cut(s) 27, 65, 81, 142, 173, 192, 248, 300
Lsp1109I GCAGC 3 cut(s) 43, 376, 379
LweI GCATC 1 cut(s) 61
MaeI CTAG 1 cut(s) 341
MaeIII GTNAC 1 cut(s) 63
MfeI CAATTG 1 cut(s) 316
MhlI GDGCHC 2 cut(s) 102, 168
MluCI AATT 3 cut(s) 316, 355, 400
MlyI GAGTC 4 cut(s) 13, 141, 152, 338
MmeI TCCRAC 1 cut(s) 63
MnlI CCTC 6 cut(s) 10, 97, 195, 233, 322, 373
MseI TTAA 2 cut(s) 300, 420
MspA1I CMGCKG 1 cut(s) 34
MspI CCGG 3 cut(s) 14, 68, 129
MspR9I CCNGG 1 cut(s) 14
MunI CAATTG 1 cut(s) 316
MwoI GCNNNNNNNGC 1 cut(s) 122
NciI CCSGG 1 cut(s) 14
NlaIV GGNNCC 1 cut(s) 11
PcsI WCGNNNNNNNCGW 1 cut(s) 333
PkrI GCNGC 3 cut(s) 33, 391, 394
PleI GAGTC 4 cut(s) 12, 140, 151, 338
PpsI GAGTC 4 cut(s) 12, 140, 151, 338
Psp124BI GAGCTC 1 cut(s) 168
PspN4I GGNNCC 1 cut(s) 11
PspPI GGNCC 1 cut(s) 36
PstNI CAGNNNCTG 1 cut(s) 181
Rsr2I CGGWCCG 1 cut(s) 36
RsrII CGGWCCG 1 cut(s) 36
SacI GAGCTC 1 cut(s) 168
SaqAI TTAA 2 cut(s) 300, 420
SatI GCNGC 3 cut(s) 32, 390, 393
Sau96I GGNCC 1 cut(s) 36
SchI GAGTC 4 cut(s) 13, 141, 152, 338
ScrFI CCNGG 1 cut(s) 14
SduI GDGCHC 2 cut(s) 102, 168
SetI ASST 7 cut(s) 21, 54, 168, 253, 289, 306, 452
SfaNI GCATC 1 cut(s) 61
SinI GGWCC 1 cut(s) 36
SmlI CTYRAG 2 cut(s) 211, 269
SmoI CTYRAG 2 cut(s) 211, 269
Sse9I AATT 3 cut(s) 316, 355, 400
SsiI CCGC 3 cut(s) 34, 123, 395
SspMI CTAG 1 cut(s) 341
SstI GAGCTC 1 cut(s) 168
StyD4I CCNGG 1 cut(s) 12
StyI CCWWGG 1 cut(s) 136
TaaI ACNGT 1 cut(s) 58
TaqI TCGA 1 cut(s) 306
TasI AATT 3 cut(s) 316, 355, 400
Tru1I TTAA 2 cut(s) 300, 420
Tru9I TTAA 2 cut(s) 300, 420
TseI GCWGC 3 cut(s) 31, 389, 392
TspGWI ACGGA 1 cut(s) 186
VpaK11BI GGWCC 1 cut(s) 36
XapI RAATTY 1 cut(s) 400
XcmI CCANNNNNNNNNTGG 1 cut(s) 355
XmiI GTMKAC 1 cut(s) 48
XspI CTAG 1 cut(s) 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.