Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006075

Physical Location & Seq

Genomic Coordinates Forward (+)

969050 .. 971691

Gene Structure 2642 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G03800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGAACGACCTCTTAAAGGGTTCGTTAGAGTTCTCCAGGGATCGCTCTAATAGAAGCGATATTGAGTCAGGACATGGCCCTGGTAACTCTGGAGATCTCGGGCTCTCTGGTTTCTTCAAAAAGGTCCAGGAAATCGAAAAGCAATATGAGAAGCTTGACAAGCATCTCAACAAGCTTCAGGGGGCACATGAGGAGACTAAAGCCGTCACCAAGGCTCCTGCAATGAAATCAATCAAGCAAAGGATGGAGAGAGATGTTGATGAAGTGGGAAGAATTTCTCGTTTCATCAAAGGAAAGATCGAGGAACTGGACCGAGAGAATCTGGAGAACCGGACTAAACCGGGTTGTGGGAAAGGAACAGGTGTAGACAGAACAAGAACAGCCACAACTATTGCGGTGAAGAAGAAATTTAAGGACAAGATATCTGAATTCCAAACTCTAAGACAAAACATTCAACAAGAATACAGAGAAGTTGTAGAGAGGCGTGTGTTTACAGTGACTGGCCAACGAGCTGATGAAGAGACAGTTGATAGATTGATTGAAACTGGAGACAGTGAGCAAATTTTCCAGAAAGCAATCAGGGAGCAAGGACGAGGACAGATAATGGACACACTGGCTGAGATTCAGGAACGCCATGACGCTGTCAGAGATTTAGAGAAGAAACTCCTTGACCTGCAACAGGTGTTTCTCGATATGGCCGTGCTGGTGGATGCACAGGGAGAGATGTTAGACAACATAGAGAATATGGTCTCAAGTGCTGTGGATCATGTTCAATCCGGAAACAATCAACTAACAAAGGCAGTAAAAAGCCAGAAAAGTTCAAGGAAATGGATGTGCATTGCCATCCTTATCCTTCTTATCATTATTATCATTACTGTCATCTCTGTTCTCAAACCATGGACACAGAAAAATGGTGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031201 GO:0031224 GO:0032940 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0061024 GO:0061025 GO:0071840 GO:0071944 GO:0090174 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 ko04721 map04130 map04721

Pfam Domains

Protein Families

SNARE Syntaxin

Protein Analysis

306

Amino Acids

34.74

Weight (kDa)

8.67

Isoelectric Point (pI)

33.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Syntaxin	PF00804	34 - 193	7.1e-51	Syntaxin
SNARE	PF05739	241 - 293	2.1e-20	SNARE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006075)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03800 AT3G03800 AT5G08080 AT5G08080 AT5G08080 AT5G08080 AT5G08080
fragaria_vesca	FvH4_1g28350 FvH4_1g28350 FvH4_1g28350
malus_domestica	MD12G1006500.v1.1 MD14G1004100.v1.1
prunus_persica	Prupe.7G006600_v2.0.a1
pyrus_communis	pycom12g00480 pycom14g00190
rosa_chinensis	RchiOBHm_Chr3g0496741
rosa_laevigata	RLG00000022509
rosa_multiflora	Rmu_sc0000542.1_g000019
rosa_roxburghii	Rroxscaffold_6G00388750
rosa_rugosa	Rorug03G0286300 Rorug03G0286300 Rorug03G0286300 Rorug03G0286300
rosa_samantha	Rh3AG330900 Rh3BG366900 Rh3DG366700
rosa_wichuraiana	Rw3G028970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	681
AccB1I	GGYRCC	1 cut(s)	914
AccI	GTMKAC	1 cut(s)	366
AccIII	TCCGGA	1 cut(s)	776
AciI	CCGC	1 cut(s)	395
AclWI	GGATC	2 cut(s)	48, 771
AcoI	YGGCCR	2 cut(s)	502, 696
AcsI	RAATTY	4 cut(s)	273, 407, 428, 561
AcuI	CTGAAG	1 cut(s)	161
AfiI	CCNNNNNNNGG	3 cut(s)	16, 347, 679
AgsI	TTSAA	5 cut(s)	118, 455, 542, 773, 822
AjnI	CCWGG	3 cut(s)	35, 79, 126
AluBI	AGCT	3 cut(s)	154, 175, 512
AluI	AGCT	3 cut(s)	154, 175, 512
Alw26I	GTCTC	4 cut(s)	188, 515, 543, 754
AlwI	GGATC	2 cut(s)	48, 771
AlwNI	CAGNNNCTG	1 cut(s)	500
Ama87I	CYCGRG	1 cut(s)	98
Aor13HI	TCCGGA	1 cut(s)	776
AoxI	GGCC	3 cut(s)	76, 502, 696
ApoI	RAATTY	4 cut(s)	273, 407, 428, 561
Asp700I	GAANNNNTTC	1 cut(s)	274
AspS9I	GGNCC	3 cut(s)	77, 124, 310
AsuC2I	CCSGG	1 cut(s)	342
AsuHPI	GGTGA	2 cut(s)	199, 409
AvaI	CYCGRG	1 cut(s)	98
AvaII	GGWCC	2 cut(s)	124, 310
BaeGI	GKGCMC	1 cut(s)	187
BalI	TGGCCA	1 cut(s)	504
BanI	GGYRCC	1 cut(s)	914
BanII	GRGCYC	1 cut(s)	105
BccI	CCATC	2 cut(s)	238, 851
BceAI	ACGGC	2 cut(s)	188, 683
BciT130I	CCWGG	3 cut(s)	37, 81, 128
BcnI	CCSGG	1 cut(s)	342
BcoDI	GTCTC	4 cut(s)	188, 515, 543, 754
BfuAI	ACCTGC	1 cut(s)	681
BglII	AGATCT	1 cut(s)	94
Bme1390I	CCNGG	4 cut(s)	37, 81, 128, 342
Bme18I	GGWCC	2 cut(s)	124, 310
BmeT110I	CYCGRG	1 cut(s)	98
BmgT120I	GGNCC	3 cut(s)	77, 124, 310
BmiI	GGNNCC	2 cut(s)	216, 916
BmrFI	CCNGG	4 cut(s)	37, 81, 128, 342
BmsI	GCATC	2 cut(s)	172, 700
BpmI	CTGGAG	4 cut(s)	19, 111, 344, 567
BpuEI	CTTGAG	1 cut(s)	736
BpuMI	CCSGG	1 cut(s)	342
BsaI	GGTCTC	1 cut(s)	754
BsaJI	CCNNGG	4 cut(s)	36, 79, 210, 896
BsaWI	WCCGGW	2 cut(s)	330, 776
BsaXI	ACNNNNNCTCC	2 cut(s)	199, 229
Bsc4I	CCNNNNNNNGG	3 cut(s)	16, 347, 679
Bse1I	ACTGG	4 cut(s)	312, 505, 550, 618
Bse3DI	GCAATG	2 cut(s)	228, 837
BseAI	TCCGGA	1 cut(s)	776
BseBI	CCWGG	3 cut(s)	37, 81, 128
BseDI	CCNNGG	4 cut(s)	36, 79, 210, 896
BseGI	GGATG	4 cut(s)	249, 715, 837, 843
BseLI	CCNNNNNNNGG	3 cut(s)	16, 347, 679
BseMI	GCAATG	2 cut(s)	228, 837
BseMII	CTCAG	1 cut(s)	609
BseNI	ACTGG	4 cut(s)	312, 505, 550, 618
BseRI	GAGGAG	1 cut(s)	206
BseSI	GKGCMC	1 cut(s)	187
BshFI	GGCC	3 cut(s)	78, 504, 698
BshNI	GGYRCC	1 cut(s)	914
BsiHKCI	CYCGRG	1 cut(s)	98
BsiSI	CCGG	3 cut(s)	331, 341, 777
BslI	CCNNNNNNNGG	3 cut(s)	16, 347, 679
BsmAI	GTCTC	4 cut(s)	188, 515, 543, 754
BsnI	GGCC	3 cut(s)	78, 504, 698
Bso31I	GGTCTC	1 cut(s)	754
BsoBI	CYCGRG	1 cut(s)	98
Bsp1286I	GDGCHC	2 cut(s)	105, 187
Bsp13I	TCCGGA	1 cut(s)	776
Bsp143I	GATC	4 cut(s)	40, 94, 297, 763
Bsp19I	CCATGG	1 cut(s)	896
BspACI	CCGC	1 cut(s)	395
BspANI	GGCC	3 cut(s)	78, 504, 698
BspCNI	CTCAG	1 cut(s)	610
BspEI	TCCGGA	1 cut(s)	776
BspLI	GGNNCC	2 cut(s)	216, 916
BspMI	ACCTGC	1 cut(s)	681
BspPI	GGATC	2 cut(s)	48, 771
BspT107I	GGYRCC	1 cut(s)	914
BspTNI	GGTCTC	1 cut(s)	754
BsrDI	GCAATG	2 cut(s)	228, 837
BsrI	ACTGG	4 cut(s)	312, 505, 550, 618
BssECI	CCNNGG	4 cut(s)	36, 79, 210, 896
BssMI	GATC	4 cut(s)	40, 94, 297, 763
BssT1I	CCWWGG	2 cut(s)	210, 896
Bst2UI	CCWGG	3 cut(s)	37, 81, 128
Bst4CI	ACNGT	4 cut(s)	496, 526, 554, 877
Bst6I	CTCTTC	1 cut(s)	513
BstDEI	CTNAG	2 cut(s)	440, 618
BstDSI	CCRYGG	1 cut(s)	896
BstENI	CCTNNNNNAGG	2 cut(s)	14, 677
BstF5I	GGATG	4 cut(s)	249, 715, 837, 843
BstKTI	GATC	4 cut(s)	43, 97, 300, 766
BstMAI	GTCTC	4 cut(s)	188, 515, 543, 754
BstMBI	GATC	4 cut(s)	40, 94, 297, 763
BstMWI	GCNNNNNNNGC	1 cut(s)	160
BstNI	CCWGG	3 cut(s)	37, 81, 128
BstSCI	CCNGG	4 cut(s)	35, 79, 126, 340
BstSLI	GKGCMC	1 cut(s)	187
BstX2I	RGATCY	1 cut(s)	94
BstYI	RGATCY	1 cut(s)	94
BsuRI	GGCC	3 cut(s)	78, 504, 698
BtgI	CCRYGG	1 cut(s)	896
BtsCI	GGATG	4 cut(s)	249, 715, 837, 843
BtsIMutI	CAGTG	3 cut(s)	501, 559, 611
BveI	ACCTGC	1 cut(s)	681
CaiI	CAGNNNCTG	1 cut(s)	500
Cfr13I	GGNCC	3 cut(s)	77, 124, 310
CseI	GACGC	1 cut(s)	647
CspCI	CAANNNNNGTGG	4 cut(s)	373, 408, 741, 776
CviAII	CATG	5 cut(s)	74, 188, 635, 767, 897
DdeI	CTNAG	2 cut(s)	440, 618
DpnI	GATC	4 cut(s)	42, 96, 299, 765
DpnII	GATC	4 cut(s)	40, 94, 297, 763
EaeI	YGGCCR	2 cut(s)	502, 696
Eam1104I	CTCTTC	1 cut(s)	513
EarI	CTCTTC	1 cut(s)	513
Eco130I	CCWWGG	2 cut(s)	210, 896
Eco24I	GRGCYC	1 cut(s)	105
Eco31I	GGTCTC	1 cut(s)	754
Eco32I	GATATC	1 cut(s)	423
Eco47I	GGWCC	2 cut(s)	124, 310
Eco57I	CTGAAG	1 cut(s)	161
Eco88I	CYCGRG	1 cut(s)	98
EcoNI	CCTNNNNNAGG	2 cut(s)	14, 677
EcoRI	GAATTC	1 cut(s)	428
EcoRII	CCWGG	3 cut(s)	35, 79, 126
EcoRV	GATATC	1 cut(s)	423
EcoT14I	CCWWGG	2 cut(s)	210, 896
EcoT38I	GRGCYC	1 cut(s)	105
ErhI	CCWWGG	2 cut(s)	210, 896
FaeI	CATG	5 cut(s)	77, 191, 638, 770, 900
FaiI	YATR	9 cut(s)	75, 147, 189, 636, 695, 737, 746, 768, 898
FatI	CATG	5 cut(s)	73, 187, 634, 766, 896
FblI	GTMKAC	1 cut(s)	366
FokI	GGATG	4 cut(s)	256, 722, 830, 844
FriOI	GRGCYC	1 cut(s)	105
GsuI	CTGGAG	4 cut(s)	19, 111, 344, 567
HaeIII	GGCC	3 cut(s)	78, 504, 698
HapII	CCGG	3 cut(s)	331, 341, 777
HgaI	GACGC	1 cut(s)	647
Hin1II	CATG	5 cut(s)	77, 191, 638, 770, 900
HindIII	AAGCTT	2 cut(s)	152, 173
HinfI	GANTC	3 cut(s)	65, 319, 622
HpaII	CCGG	3 cut(s)	331, 341, 777
HphI	GGTGA	2 cut(s)	199, 409
Hpy166II	GTNNAC	2 cut(s)	367, 492
Hpy188I	TCNGA	2 cut(s)	427, 647
Hpy188III	TCNNGA	7 cut(s)	69, 90, 323, 568, 626, 689, 777
Hpy8I	GTNNAC	2 cut(s)	367, 492
HpyAV	CCTTC	1 cut(s)	863
HpyCH4III	ACNGT	4 cut(s)	496, 526, 554, 877
HpyCH4V	TGCA	4 cut(s)	221, 676, 713, 837
HpyF10VI	GCNNNNNNNGC	1 cut(s)	160
HpyF3I	CTNAG	2 cut(s)	440, 618
Hsp92II	CATG	5 cut(s)	77, 191, 638, 770, 900
Kpn2I	TCCGGA	1 cut(s)	776
Kzo9I	GATC	4 cut(s)	40, 94, 297, 763
LmnI	GCTCC	2 cut(s)	220, 583
LweI	GCATC	2 cut(s)	172, 700
MaeIII	GTNAC	3 cut(s)	83, 205, 496
MalI	GATC	4 cut(s)	42, 96, 299, 765
MboI	GATC	4 cut(s)	40, 94, 297, 763
MboII	GAAGA	6 cut(s)	106, 282, 412, 415, 530, 670
MflI	RGATCY	1 cut(s)	94
MhlI	GDGCHC	2 cut(s)	105, 187
MlsI	TGGCCA	1 cut(s)	504
MluCI	AATT	4 cut(s)	273, 407, 428, 561
MluNI	TGGCCA	1 cut(s)	504
MlyI	GAGTC	1 cut(s)	74
MnlI	CCTC	5 cut(s)	20, 184, 295, 474, 587
Mox20I	TGGCCA	1 cut(s)	504
MroI	TCCGGA	1 cut(s)	776
MroXI	GAANNNNTTC	1 cut(s)	274
MscI	TGGCCA	1 cut(s)	504
MseI	TTAA	2 cut(s)	14, 411
Msp20I	TGGCCA	1 cut(s)	504
MspI	CCGG	3 cut(s)	331, 341, 777
MspR9I	CCNGG	4 cut(s)	37, 81, 128, 342
MvaI	CCWGG	3 cut(s)	37, 81, 128
MwoI	GCNNNNNNNGC	1 cut(s)	160
NciI	CCSGG	1 cut(s)	342
NcoI	CCATGG	1 cut(s)	896
NdeII	GATC	4 cut(s)	40, 94, 297, 763
NlaIII	CATG	5 cut(s)	77, 191, 638, 770, 900
NlaIV	GGNNCC	2 cut(s)	216, 916
NmuCI	GTSAC	2 cut(s)	205, 496
PcsI	WCGNNNNNNNCGW	1 cut(s)	696
PdmI	GAANNNNTTC	1 cut(s)	274
PfeI	GAWTC	2 cut(s)	319, 622
PflFI	GACNNNGTC	1 cut(s)	641
PfoI	TCCNGGA	1 cut(s)	126
PleI	GAGTC	1 cut(s)	73
PpsI	GAGTC	1 cut(s)	73
Psp6I	CCWGG	3 cut(s)	35, 79, 126
PspGI	CCWGG	3 cut(s)	35, 79, 126
PspN4I	GGNNCC	2 cut(s)	216, 916
PspPI	GGNCC	3 cut(s)	77, 124, 310
PstNI	CAGNNNCTG	1 cut(s)	500
PsuI	RGATCY	1 cut(s)	94
PsyI	GACNNNGTC	1 cut(s)	641
SaqAI	TTAA	2 cut(s)	14, 411
Sau3AI	GATC	4 cut(s)	40, 94, 297, 763
Sau96I	GGNCC	3 cut(s)	77, 124, 310
SchI	GAGTC	1 cut(s)	74
ScrFI	CCNGG	4 cut(s)	37, 81, 128, 342
SduI	GDGCHC	2 cut(s)	105, 187
SetI	ASST	8 cut(s)	12, 126, 156, 177, 364, 514, 675, 684
SfaNI	GCATC	2 cut(s)	172, 700
SinI	GGWCC	2 cut(s)	124, 310
SmlI	CTYRAG	1 cut(s)	751
SmoI	CTYRAG	1 cut(s)	751
Sse9I	AATT	4 cut(s)	273, 407, 428, 561
SsiI	CCGC	1 cut(s)	395
StyD4I	CCNGG	4 cut(s)	35, 79, 126, 340
StyI	CCWWGG	2 cut(s)	210, 896
TaaI	ACNGT	4 cut(s)	496, 526, 554, 877
TaqI	TCGA	3 cut(s)	135, 300, 690
TaqII	GACCGA	1 cut(s)	327
TasI	AATT	4 cut(s)	273, 407, 428, 561
TfiI	GAWTC	2 cut(s)	319, 622
Tru1I	TTAA	2 cut(s)	14, 411
Tru9I	TTAA	2 cut(s)	14, 411
TscAI	CASTG	3 cut(s)	501, 559, 618
TseFI	GTSAC	2 cut(s)	205, 496
Tsp45I	GTSAC	2 cut(s)	205, 496
TspDTI	ATGAA	5 cut(s)	17, 239, 274, 276, 531
TspRI	CASTG	3 cut(s)	501, 559, 618
Tth111I	GACNNNGTC	1 cut(s)	641
VpaK11BI	GGWCC	2 cut(s)	124, 310
XagI	CCTNNNNNAGG	2 cut(s)	14, 677
XapI	RAATTY	4 cut(s)	273, 407, 428, 561
XmiI	GTMKAC	1 cut(s)	366
XmnI	GAANNNNTTC	1 cut(s)	274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.