Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0006075

Physical Location & Seq

Genomic Coordinates Forward (+)

863538 .. 868758

Gene Structure 5221 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G006600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGAACGACCTGCTAAAGGATTCTTTTGAGATCCCTCGGGGTCAAGCATCTAGAGATGGAGATATCGAACTAGGAACAAATGGTTCAATGAATTCTGGAGAATTTGGTTTGGAGAATTTCTTTAAAAAGGTTCAAGAGATTGAGAAGCAAAATGAGAAGCTTAATAAGCTCCTGAAAAAACTCCAGGATGCACATGAGGAGTCCAAGGCTGTGACTAAGGCTCCTTCAATGAAATCAATCAAGCAGCGGATGGAGAAAGATGTCGATGAAGTTGGAAAAATTGCTCGTTGGATAAAGTCAAAAATTGAAGAACTTGACAAAGAGAATTTAGCAAATAGACAAAAGCCTGGGTGCGGAAAAGGAACAGGTGTAGATCGATCCCGAACAGCAACAACCCTTGCCTTGAAAAAAAAATTAAAGGACAAGATGGCTGAATTTCAGACTCTAAGAGAAACCATCCATCAAGAGTATCGGGAGGTTGTCGAGAGGCGAGTTTTTACAGTAACGGGCACAAGAGCTGATGAAGAGACAATTGAAAGATTAATTGAGACAGGAGACAGTGAACAAATTTTTCAAAAGGCAATCCAGGAACAAGGACGAGGCCAGATAATGGACACTCTGGCAGAGATTCAAGAGCGCCATGATGCGGTTAGAGATCTTGAGAGGAAGCTTCTTGATTTACAACAGATATTTCTGGATATGGCGGTGTTGGTGGATGCACAAGGGGACTTACTTGACAACATAGAAACCCAGGTATCGAGTGCAGTAGATCATGTACAGCAAGGGAATACAGCTCTTCAGAAGGCGAAGAAGCTACAGAAGAGTTCCAGGAAATGGATGTGCATTGCAATCCTCATCCTTCTCATCATTGTTATAATCATTGTGGTGGCCGTGCTCAAGCCGTGGAATAGCAACAAGGGCGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031201 GO:0031224 GO:0032940 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0061024 GO:0061025 GO:0071840 GO:0071944 GO:0090174 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 ko04721 map04130 map04721

Pfam Domains

Protein Families

SNARE Syntaxin

Protein Analysis

309

Amino Acids

34.94

Weight (kDa)

7.7

Isoelectric Point (pI)

38.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006075)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03800 AT3G03800 AT5G08080 AT5G08080 AT5G08080 AT5G08080 AT5G08080
fragaria_vesca	FvH4_1g28350 FvH4_1g28350 FvH4_1g28350
malus_domestica	MD12G1006500.v1.1 MD14G1004100.v1.1
prunus_persica	Prupe.7G006600_v2.0.a1
pyrus_communis	pycom12g00480 pycom14g00190
rosa_chinensis	RchiOBHm_Chr3g0496741
rosa_laevigata	RLG00000022509
rosa_multiflora	Rmu_sc0000542.1_g000019
rosa_roxburghii	Rroxscaffold_6G00388750
rosa_rugosa	Rorug03G0286300 Rorug03G0286300 Rorug03G0286300 Rorug03G0286300
rosa_samantha	Rh3AG330900 Rh3BG366900 Rh3DG366700
rosa_wichuraiana	Rw3G028970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	875
Acc36I	ACCTGC	1 cut(s)	18
AccB7I	CCANNNNNTGG	2 cut(s)	610, 834
AciI	CCGC	4 cut(s)	247, 354, 647, 704
AclWI	GGATC	2 cut(s)	25, 372
AcoI	YGGCCR	1 cut(s)	888
AcsI	RAATTY	6 cut(s)	91, 101, 115, 325, 434, 567
AcuI	CTGAAG	1 cut(s)	782
AfaI	GTAC	1 cut(s)	777
AfiI	CCNNNNNNNGG	5 cut(s)	16, 353, 610, 646, 834
AgsI	TTSAA	8 cut(s)	87, 134, 228, 308, 406, 536, 575, 632
AjnI	CCWGG	5 cut(s)	183, 346, 585, 750, 827
AluBI	AGCT	6 cut(s)	160, 169, 518, 670, 794, 814
AluI	AGCT	6 cut(s)	160, 169, 518, 670, 794, 814
Alw21I	GWGCWC	1 cut(s)	897
Alw26I	GTCTC	3 cut(s)	521, 542, 549
AlwI	GGATC	2 cut(s)	25, 372
Ama87I	CYCGRG	1 cut(s)	36
AoxI	GGCC	2 cut(s)	601, 888
ApeKI	GCWGC	1 cut(s)	244
ApoI	RAATTY	6 cut(s)	91, 101, 115, 325, 434, 567
AseI	ATTAAT	1 cut(s)	542
AspLEI	GCGC	2 cut(s)	639, 923
AvaI	CYCGRG	1 cut(s)	36
BaeGI	GKGCMC	1 cut(s)	512
BaeI	ACNNNNGTAYC	2 cut(s)	738, 771
Bbv12I	GWGCWC	1 cut(s)	897
BbvI	GCAGC	1 cut(s)	256
BccI	CCATC	5 cut(s)	50, 244, 421, 464, 468
BceAI	ACGGC	2 cut(s)	875, 886
BciT130I	CCWGG	5 cut(s)	185, 348, 587, 752, 829
BcoDI	GTCTC	3 cut(s)	521, 542, 549
BfaI	CTAG	2 cut(s)	51, 71
BfmI	CTRYAG	1 cut(s)	815
BfoI	RGCGCY	2 cut(s)	640, 924
BfuAI	ACCTGC	1 cut(s)	18
BglII	AGATCT	1 cut(s)	655
BisI	GCNGC	1 cut(s)	245
BlsI	GCNGC	1 cut(s)	246
Bme1390I	CCNGG	5 cut(s)	185, 348, 587, 752, 829
BmeT110I	CYCGRG	1 cut(s)	36
BmiI	GGNNCC	1 cut(s)	222
BmrFI	CCNGG	5 cut(s)	185, 348, 587, 752, 829
BmsI	GCATC	4 cut(s)	56, 178, 634, 706
BpmI	CTGGAG	2 cut(s)	117, 167
BpuEI	CTTGAG	2 cut(s)	680, 881
Bsa29I	ATCGAT	1 cut(s)	376
BsaJI	CCNNGG	5 cut(s)	35, 204, 347, 750, 902
BsaXI	ACNNNNNCTCC	2 cut(s)	205, 235
Bsc4I	CCNNNNNNNGG	5 cut(s)	16, 353, 610, 646, 834
Bse3DI	GCAATG	1 cut(s)	843
BseBI	CCWGG	5 cut(s)	185, 348, 587, 752, 829
BseCI	ATCGAT	1 cut(s)	376
BseDI	CCNNGG	5 cut(s)	35, 204, 347, 750, 902
BseGI	GGATG	6 cut(s)	193, 255, 456, 721, 843, 855
BseLI	CCNNNNNNNGG	5 cut(s)	16, 353, 610, 646, 834
BseMI	GCAATG	1 cut(s)	843
BseRI	GAGGAG	1 cut(s)	212
BseSI	GKGCMC	1 cut(s)	512
BseXI	GCAGC	1 cut(s)	256
BsgI	GTGCAG	1 cut(s)	783
BshFI	GGCC	2 cut(s)	603, 890
BshVI	ATCGAT	1 cut(s)	376
BsiHKAI	GWGCWC	1 cut(s)	897
BsiHKCI	CYCGRG	1 cut(s)	36
BslFI	GGGAC	1 cut(s)	740
BslI	CCNNNNNNNGG	5 cut(s)	16, 353, 610, 646, 834
BsmAI	GTCTC	3 cut(s)	521, 542, 549
BsmFI	GGGAC	1 cut(s)	740
BsnI	GGCC	2 cut(s)	603, 890
BsoBI	CYCGRG	1 cut(s)	36
Bsp1286I	GDGCHC	2 cut(s)	512, 897
Bsp1407I	TGTACA	1 cut(s)	775
Bsp143I	GATC	5 cut(s)	30, 373, 377, 655, 769
BspACI	CCGC	4 cut(s)	247, 354, 647, 704
BspANI	GGCC	2 cut(s)	603, 890
BspDI	ATCGAT	1 cut(s)	376
BspLI	GGNNCC	1 cut(s)	222
BspMI	ACCTGC	1 cut(s)	18
BspPI	GGATC	2 cut(s)	25, 372
BspQI	GCTCTTC	1 cut(s)	801
BsrDI	GCAATG	1 cut(s)	843
BsrGI	TGTACA	1 cut(s)	775
BssECI	CCNNGG	5 cut(s)	35, 204, 347, 750, 902
BssMI	GATC	5 cut(s)	30, 373, 377, 655, 769
BssT1I	CCWWGG	1 cut(s)	204
Bst2UI	CCWGG	5 cut(s)	185, 348, 587, 752, 829
Bst4CI	ACNGT	2 cut(s)	502, 560
Bst6I	CTCTTC	3 cut(s)	519, 801, 815
BstAUI	TGTACA	1 cut(s)	775
BstDEI	CTNAG	3 cut(s)	216, 446, 924
BstDSI	CCRYGG	1 cut(s)	902
BstENI	CCTNNNNNAGG	1 cut(s)	14
BstF5I	GGATG	6 cut(s)	193, 255, 456, 721, 843, 855
BstH2I	RGCGCY	2 cut(s)	640, 924
BstHHI	GCGC	2 cut(s)	639, 923
BstKTI	GATC	5 cut(s)	33, 376, 380, 658, 772
BstMAI	GTCTC	3 cut(s)	521, 542, 549
BstMBI	GATC	5 cut(s)	30, 373, 377, 655, 769
BstMWI	GCNNNNNNNGC	2 cut(s)	166, 918
BstNI	CCWGG	5 cut(s)	185, 348, 587, 752, 829
BstSCI	CCNGG	5 cut(s)	183, 346, 585, 750, 827
BstSFI	CTRYAG	1 cut(s)	815
BstSLI	GKGCMC	1 cut(s)	512
BstV1I	GCAGC	1 cut(s)	256
BstX2I	RGATCY	2 cut(s)	30, 655
BstYI	RGATCY	2 cut(s)	30, 655
Bsu15I	ATCGAT	1 cut(s)	376
BsuRI	GGCC	2 cut(s)	603, 890
BsuTUI	ATCGAT	1 cut(s)	376
BtgI	CCRYGG	1 cut(s)	902
BtsCI	GGATG	6 cut(s)	193, 255, 456, 721, 843, 855
BtsIMutI	CAGTG	1 cut(s)	565
BveI	ACCTGC	1 cut(s)	18
CfoI	GCGC	2 cut(s)	639, 923
ClaI	ATCGAT	1 cut(s)	376
Csp6I	GTAC	1 cut(s)	776
CviAII	CATG	3 cut(s)	194, 641, 773
CviQI	GTAC	1 cut(s)	776
DdeI	CTNAG	3 cut(s)	216, 446, 924
DpnI	GATC	5 cut(s)	32, 375, 379, 657, 771
DpnII	GATC	5 cut(s)	30, 373, 377, 655, 769
DraI	TTTAAA	1 cut(s)	124
EaeI	YGGCCR	1 cut(s)	888
Eam1104I	CTCTTC	3 cut(s)	519, 801, 815
EarI	CTCTTC	3 cut(s)	519, 801, 815
Eco130I	CCWWGG	1 cut(s)	204
Eco32I	GATATC	1 cut(s)	64
Eco57I	CTGAAG	1 cut(s)	782
Eco88I	CYCGRG	1 cut(s)	36
EcoNI	CCTNNNNNAGG	1 cut(s)	14
EcoRI	GAATTC	1 cut(s)	91
EcoRII	CCWGG	5 cut(s)	183, 346, 585, 750, 827
EcoRV	GATATC	1 cut(s)	64
EcoT14I	CCWWGG	1 cut(s)	204
ErhI	CCWWGG	1 cut(s)	204
FaeI	CATG	3 cut(s)	197, 644, 776
FaiI	YATR	6 cut(s)	195, 642, 701, 743, 774, 875
FaqI	GGGAC	1 cut(s)	740
FatI	CATG	3 cut(s)	193, 640, 772
Fnu4HI	GCNGC	1 cut(s)	245
FokI	GGATG	6 cut(s)	200, 262, 443, 728, 842, 850
Fsp4HI	GCNGC	1 cut(s)	245
FspBI	CTAG	2 cut(s)	51, 71
GlaI	GCGC	2 cut(s)	638, 922
GluI	GCNGC	1 cut(s)	245
GsuI	CTGGAG	2 cut(s)	117, 167
HaeII	RGCGCY	2 cut(s)	640, 924
HaeIII	GGCC	2 cut(s)	603, 890
HhaI	GCGC	2 cut(s)	639, 923
Hin1II	CATG	3 cut(s)	197, 644, 776
Hin6I	GCGC	2 cut(s)	637, 921
HinP1I	GCGC	2 cut(s)	637, 921
HindIII	AAGCTT	2 cut(s)	158, 668
HinfI	GANTC	4 cut(s)	20, 200, 442, 628
Hpy166II	GTNNAC	1 cut(s)	563
Hpy188I	TCNGA	2 cut(s)	441, 801
Hpy8I	GTNNAC	1 cut(s)	563
HpyAV	CCTTC	3 cut(s)	234, 796, 869
HpyCH4III	ACNGT	2 cut(s)	502, 560
HpyCH4V	TGCA	5 cut(s)	191, 719, 764, 843, 848
HpyF10VI	GCNNNNNNNGC	2 cut(s)	166, 918
HpyF3I	CTNAG	3 cut(s)	216, 446, 924
Hsp92II	CATG	3 cut(s)	197, 644, 776
HspAI	GCGC	2 cut(s)	637, 921
Kzo9I	GATC	5 cut(s)	30, 373, 377, 655, 769
LguI	GCTCTTC	1 cut(s)	801
LmnI	GCTCC	2 cut(s)	174, 226
Lsp1109I	GCAGC	1 cut(s)	256
LweI	GCATC	4 cut(s)	56, 178, 634, 706
MaeI	CTAG	2 cut(s)	51, 71
MaeIII	GTNAC	2 cut(s)	211, 502
MalI	GATC	5 cut(s)	32, 375, 379, 657, 771
MboI	GATC	5 cut(s)	30, 373, 377, 655, 769
MboII	GAAGA	5 cut(s)	320, 536, 788, 820, 832
MfeI	CAATTG	1 cut(s)	531
MflI	RGATCY	2 cut(s)	30, 655
MhlI	GDGCHC	2 cut(s)	512, 897
MlyI	GAGTC	2 cut(s)	209, 436
MmeI	TCCRAC	2 cut(s)	253, 269
MnlI	CCTC	7 cut(s)	45, 190, 469, 480, 593, 657, 863
MseI	TTAA	4 cut(s)	123, 162, 416, 542
MslI	CAYNNNNRTG	1 cut(s)	884
MspA1I	CMGCKG	1 cut(s)	247
MspR9I	CCNGG	5 cut(s)	185, 348, 587, 752, 829
MunI	CAATTG	1 cut(s)	531
MvaI	CCWGG	5 cut(s)	185, 348, 587, 752, 829
MwoI	GCNNNNNNNGC	2 cut(s)	166, 918
NdeII	GATC	5 cut(s)	30, 373, 377, 655, 769
NlaIII	CATG	3 cut(s)	197, 644, 776
NlaIV	GGNNCC	1 cut(s)	222
NmuCI	GTSAC	1 cut(s)	211
PciSI	GCTCTTC	1 cut(s)	801
PfeI	GAWTC	2 cut(s)	20, 628
PflMI	CCANNNNNTGG	2 cut(s)	610, 834
PfoI	TCCNGGA	3 cut(s)	183, 585, 827
PkrI	GCNGC	1 cut(s)	246
PleI	GAGTC	2 cut(s)	208, 436
PpsI	GAGTC	2 cut(s)	208, 436
PshBI	ATTAAT	1 cut(s)	542
PsiI	TTATAA	1 cut(s)	875
Psp6I	CCWGG	5 cut(s)	183, 346, 585, 750, 827
PspGI	CCWGG	5 cut(s)	183, 346, 585, 750, 827
PspN4I	GGNNCC	1 cut(s)	222
PsuI	RGATCY	2 cut(s)	30, 655
RsaI	GTAC	1 cut(s)	777
RsaNI	GTAC	1 cut(s)	776
RseI	CAYNNNNRTG	1 cut(s)	884
SapI	GCTCTTC	1 cut(s)	801
SaqAI	TTAA	4 cut(s)	123, 162, 416, 542
SatI	GCNGC	1 cut(s)	245
Sau3AI	GATC	5 cut(s)	30, 373, 377, 655, 769
SchI	GAGTC	2 cut(s)	209, 436
ScrFI	CCNGG	5 cut(s)	185, 348, 587, 752, 829
SduI	GDGCHC	2 cut(s)	512, 897
SfaNI	GCATC	4 cut(s)	56, 178, 634, 706
SfcI	CTRYAG	1 cut(s)	815
SmiMI	CAYNNNNRTG	1 cut(s)	884
SmlI	CTYRAG	2 cut(s)	659, 896
SmoI	CTYRAG	2 cut(s)	659, 896
SsiI	CCGC	4 cut(s)	247, 354, 647, 704
SspMI	CTAG	2 cut(s)	51, 71
StyD4I	CCNGG	5 cut(s)	183, 346, 585, 750, 827
StyI	CCWWGG	1 cut(s)	204
TaaI	ACNGT	2 cut(s)	502, 560
TaqI	TCGA	5 cut(s)	66, 264, 376, 483, 758
TatI	WGTACW	1 cut(s)	775
TfiI	GAWTC	2 cut(s)	20, 628
Tru1I	TTAA	4 cut(s)	123, 162, 416, 542
Tru9I	TTAA	4 cut(s)	123, 162, 416, 542
TscAI	CASTG	1 cut(s)	565
TseFI	GTSAC	1 cut(s)	211
TseI	GCWGC	1 cut(s)	244
Tsp45I	GTSAC	1 cut(s)	211
TspDTI	ATGAA	5 cut(s)	17, 104, 245, 282, 537
TspRI	CASTG	1 cut(s)	565
Van91I	CCANNNNNTGG	2 cut(s)	610, 834
VspI	ATTAAT	1 cut(s)	542
XagI	CCTNNNNNAGG	1 cut(s)	14
XapI	RAATTY	6 cut(s)	91, 101, 115, 325, 434, 567
XbaI	TCTAGA	1 cut(s)	50
XspI	CTAG	2 cut(s)	51, 71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.