Rh3AG330900

Belongs to the syntaxin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0006075
Physical Location & Seq
Reverse (-)
47682253 .. 47687992
5740 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG330900.1

Sequence Viewer

Length: 693 bp
ATGAACGACCTCCTCAAGGATTCTTTTGAGATCCCTCGGAGTCAACCTCCTACCGGTGGAGATATTGAACTAGGAACACAAGTCTCAATGAATTCTGGAGAACTTGGTTTGGAAAATTTCTTTAAAAAGGTTCAAGAGATTGAGAAACAGAATGAGAAGCTAGATAAGCTTCTGAGAAAGCTCCAGGATGCACATGAGGAGACCAAGGCTGTGACTAAGGCACCTTCCATGAAATCCATTAAAAAGCGGATGGAGAAAGATGTAGATGAAGTTGGAAAAATTGCTCGCTTTATAAAGTCAAAAATTGAAGAACTTGACAGAGAGAATTTAGCAAATAGACAGAAACCTGGGTGTGGAAAAGGAACAGGTGTAGATCGATCGCGAACAGCAACAACTCTTGCTTTGAAAAAGAAATTAAAGGACAAGATGGCTGAATTTCAGACTCTAAGAGAAACCATTCATCAAGAGTATCGGGAGGTTGTCGAGAGGCGAGTTTTTACAGTGACGGGCACGAGAGCGGATGAAGAGACAATTGAGAGATTAATTGAGACTGGAGACAGTGAACAAATTTTCCAAAAGGCAATCCACGAACAAGGTCGAGGCCAGGTCATGGACACTCTGGCAGAAATTCAAGAGCGCCATGATGCTGTTAGAGACCTTGAGAAGAAGCTTCTTGATTTACAGCAGTTTTGA

Protein Analysis

230

Amino Acids

26.42

Weight (kDa)

6.49

Isoelectric Point (pI)

39.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Syntaxin PF00804 36 - 195 5.3e-53 Syntaxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 293
AccB1I GGYRCC 1 cut(s) 220
AccB7I CCANNNNNTGG 1 cut(s) 610
AccBSI CCGCTC 1 cut(s) 518
AccII CGCG 1 cut(s) 382
AciI CCGC 2 cut(s) 247, 518
AclWI GGATC 1 cut(s) 25
AcsI RAATTY 6 cut(s) 91, 115, 325, 434, 567, 627
AfiI CCNNNNNNNGG 5 cut(s) 16, 53, 56, 353, 610
AgeI ACCGGT 1 cut(s) 53
AgsI TTSAA 5 cut(s) 68, 134, 308, 406, 632
AjnI CCWGG 3 cut(s) 183, 346, 603
AloI GAACNNNNNNTCC 2 cut(s) 555, 587
AluBI AGCT 4 cut(s) 160, 169, 181, 670
AluI AGCT 4 cut(s) 160, 169, 181, 670
Alw26I GTCTC 6 cut(s) 88, 194, 521, 542, 549, 648
AlwI GGATC 1 cut(s) 25
AoxI GGCC 1 cut(s) 601
ApoI RAATTY 6 cut(s) 91, 115, 325, 434, 567, 627
AseI ATTAAT 1 cut(s) 542
AsiGI ACCGGT 1 cut(s) 53
Asp700I GAANNNNTTC 1 cut(s) 456
AspLEI GCGC 1 cut(s) 639
BaeGI GKGCMC 1 cut(s) 512
BanI GGYRCC 1 cut(s) 220
BauI CACGAG 1 cut(s) 511
BccI CCATC 2 cut(s) 244, 421
BciT130I CCWGG 3 cut(s) 185, 348, 605
BcoDI GTCTC 6 cut(s) 88, 194, 521, 542, 549, 648
BfaI CTAG 2 cut(s) 71, 161
BfoI RGCGCY 1 cut(s) 640
Bme1390I CCNGG 3 cut(s) 185, 348, 605
BmiI GGNNCC 1 cut(s) 222
BmrFI CCNGG 3 cut(s) 185, 348, 605
BmsI GCATC 2 cut(s) 178, 634
BplI GAGNNNNNCTC 2 cut(s) 31, 63
BpmI CTGGAG 3 cut(s) 117, 167, 573
BpuEI CTTGAG 1 cut(s) 680
Bsa29I ATCGAT 1 cut(s) 376
BsaI GGTCTC 2 cut(s) 194, 648
BsaJI CCNNGG 3 cut(s) 35, 204, 347
BsaWI WCCGGW 1 cut(s) 53
Bsc4I CCNNNNNNNGG 5 cut(s) 16, 53, 56, 353, 610
Bse118I RCCGGY 1 cut(s) 53
Bse1I ACTGG 1 cut(s) 556
BseBI CCWGG 3 cut(s) 185, 348, 605
BseCI ATCGAT 1 cut(s) 376
BseDI CCNNGG 3 cut(s) 35, 204, 347
BseGI GGATG 3 cut(s) 193, 255, 526
BseLI CCNNNNNNNGG 5 cut(s) 16, 53, 56, 353, 610
BseMII CTCAG 1 cut(s) 164
BseNI ACTGG 1 cut(s) 556
BseRI GAGGAG 1 cut(s) 212
BseSI GKGCMC 1 cut(s) 512
Bsh1236I CGCG 1 cut(s) 382
Bsh1285I CGRYCG 1 cut(s) 380
BshFI GGCC 1 cut(s) 603
BshNI GGYRCC 1 cut(s) 220
BshTI ACCGGT 1 cut(s) 53
BshVI ATCGAT 1 cut(s) 376
BsiEI CGRYCG 1 cut(s) 380
BsiSI CCGG 1 cut(s) 54
BslI CCNNNNNNNGG 5 cut(s) 16, 53, 56, 353, 610
BsmAI GTCTC 6 cut(s) 88, 194, 521, 542, 549, 648
BsnI GGCC 1 cut(s) 603
Bso31I GGTCTC 2 cut(s) 194, 648
Bsp1286I GDGCHC 1 cut(s) 512
Bsp143I GATC 3 cut(s) 30, 373, 377
Bsp68I TCGCGA 1 cut(s) 382
BspACI CCGC 2 cut(s) 247, 518
BspANI GGCC 1 cut(s) 603
BspCNI CTCAG 1 cut(s) 165
BspDI ATCGAT 1 cut(s) 376
BspFNI CGCG 1 cut(s) 382
BspLI GGNNCC 1 cut(s) 222
BspPI GGATC 1 cut(s) 25
BspT107I GGYRCC 1 cut(s) 220
BspTNI GGTCTC 2 cut(s) 194, 648
BsrBI CCGCTC 1 cut(s) 518
BsrFI RCCGGY 1 cut(s) 53
BsrI ACTGG 1 cut(s) 556
BssAI RCCGGY 1 cut(s) 53
BssECI CCNNGG 3 cut(s) 35, 204, 347
BssMI GATC 3 cut(s) 30, 373, 377
BssSI CACGAG 1 cut(s) 511
BssT1I CCWWGG 1 cut(s) 204
Bst2BI CACGAG 1 cut(s) 511
Bst2UI CCWGG 3 cut(s) 185, 348, 605
Bst4CI ACNGT 2 cut(s) 502, 560
Bst6I CTCTTC 1 cut(s) 519
BstC8I GCNNGC 1 cut(s) 286
BstDEI CTNAG 3 cut(s) 173, 216, 446
BstENI CCTNNNNNAGG 1 cut(s) 14
BstF5I GGATG 3 cut(s) 193, 255, 526
BstFNI CGCG 1 cut(s) 382
BstH2I RGCGCY 1 cut(s) 640
BstHHI GCGC 1 cut(s) 639
BstKTI GATC 3 cut(s) 33, 376, 380
BstMAI GTCTC 6 cut(s) 88, 194, 521, 542, 549, 648
BstMBI GATC 3 cut(s) 30, 373, 377
BstMCI CGRYCG 1 cut(s) 380
BstMWI GCNNNNNNNGC 1 cut(s) 166
BstNI CCWGG 3 cut(s) 185, 348, 605
BstSCI CCNGG 3 cut(s) 183, 346, 603
BstSLI GKGCMC 1 cut(s) 512
BstUI CGCG 1 cut(s) 382
BstX2I RGATCY 1 cut(s) 30
BstYI RGATCY 1 cut(s) 30
Bsu15I ATCGAT 1 cut(s) 376
BsuRI GGCC 1 cut(s) 603
BsuTUI ATCGAT 1 cut(s) 376
BtsCI GGATG 3 cut(s) 193, 255, 526
BtsIMutI CAGTG 2 cut(s) 507, 565
BtuMI TCGCGA 1 cut(s) 382
Cac8I GCNNGC 1 cut(s) 286
CfoI GCGC 1 cut(s) 639
Cfr10I RCCGGY 1 cut(s) 53
ClaI ATCGAT 1 cut(s) 376
CspAI ACCGGT 1 cut(s) 53
CviAII CATG 4 cut(s) 194, 229, 610, 641
CviJI RGCY 7 cut(s) 160, 169, 181, 209, 431, 603, 670
CviKI_1 RGCY 7 cut(s) 160, 169, 181, 209, 431, 603, 670
DdeI CTNAG 3 cut(s) 173, 216, 446
DpnI GATC 3 cut(s) 32, 375, 379
DpnII GATC 3 cut(s) 30, 373, 377
DraI TTTAAA 1 cut(s) 124
Eam1104I CTCTTC 1 cut(s) 519
EarI CTCTTC 1 cut(s) 519
Eco130I CCWWGG 1 cut(s) 204
Eco31I GGTCTC 2 cut(s) 194, 648
EcoNI CCTNNNNNAGG 1 cut(s) 14
EcoRI GAATTC 1 cut(s) 91
EcoRII CCWGG 3 cut(s) 183, 346, 603
EcoT14I CCWWGG 1 cut(s) 204
ErhI CCWWGG 1 cut(s) 204
FaeI CATG 4 cut(s) 197, 232, 613, 644
FaiI YATR 5 cut(s) 195, 230, 293, 611, 642
FatI CATG 4 cut(s) 193, 228, 609, 640
FokI GGATG 3 cut(s) 200, 262, 533
FspBI CTAG 2 cut(s) 71, 161
GlaI GCGC 1 cut(s) 638
GsuI CTGGAG 3 cut(s) 117, 167, 573
HaeII RGCGCY 1 cut(s) 640
HaeIII GGCC 1 cut(s) 603
HapII CCGG 1 cut(s) 54
HhaI GCGC 1 cut(s) 639
Hin1II CATG 4 cut(s) 197, 232, 613, 644
Hin6I GCGC 1 cut(s) 637
HinP1I GCGC 1 cut(s) 637
HincII GTYRAC 1 cut(s) 44
HindII GTYRAC 1 cut(s) 44
HindIII AAGCTT 2 cut(s) 167, 668
HinfI GANTC 3 cut(s) 20, 40, 442
HpaII CCGG 1 cut(s) 54
Hpy166II GTNNAC 2 cut(s) 44, 563
Hpy188I TCNGA 3 cut(s) 39, 174, 441
Hpy188III TCNNGA 8 cut(s) 96, 134, 381, 464, 473, 484, 632, 674
Hpy8I GTNNAC 2 cut(s) 44, 563
HpyAV CCTTC 1 cut(s) 234
HpyCH4III ACNGT 2 cut(s) 502, 560
HpyCH4V TGCA 1 cut(s) 191
HpyF10VI GCNNNNNNNGC 1 cut(s) 166
HpyF3I CTNAG 3 cut(s) 173, 216, 446
Hsp92II CATG 4 cut(s) 197, 232, 613, 644
HspAI GCGC 1 cut(s) 637
Kzo9I GATC 3 cut(s) 30, 373, 377
LmnI GCTCC 1 cut(s) 186
LweI GCATC 2 cut(s) 178, 634
MaeI CTAG 2 cut(s) 71, 161
MaeIII GTNAC 2 cut(s) 211, 502
MalI GATC 3 cut(s) 32, 375, 379
MbiI CCGCTC 1 cut(s) 518
MboI GATC 3 cut(s) 30, 373, 377
MboII GAAGA 3 cut(s) 320, 536, 676
MfeI CAATTG 1 cut(s) 531
MflI RGATCY 1 cut(s) 30
MhlI GDGCHC 1 cut(s) 512
MlyI GAGTC 2 cut(s) 49, 436
MmeI TCCRAC 1 cut(s) 253
MnlI CCTC 8 cut(s) 20, 23, 45, 57, 190, 469, 480, 593
MroXI GAANNNNTTC 1 cut(s) 456
MseI TTAA 4 cut(s) 123, 240, 416, 542
MspI CCGG 1 cut(s) 54
MspR9I CCNGG 3 cut(s) 185, 348, 605
MunI CAATTG 1 cut(s) 531
MvaI CCWGG 3 cut(s) 185, 348, 605
MvnI CGCG 1 cut(s) 382
MwoI GCNNNNNNNGC 1 cut(s) 166
NdeII GATC 3 cut(s) 30, 373, 377
NlaIII CATG 4 cut(s) 197, 232, 613, 644
NlaIV GGNNCC 1 cut(s) 222
NmuCI GTSAC 2 cut(s) 211, 502
NruI TCGCGA 1 cut(s) 382
PdmI GAANNNNTTC 1 cut(s) 456
PfeI GAWTC 1 cut(s) 20
PflMI CCANNNNNTGG 1 cut(s) 610
PfoI TCCNGGA 1 cut(s) 183
PinAI ACCGGT 1 cut(s) 53
Ple19I CGATCG 1 cut(s) 380
PleI GAGTC 2 cut(s) 48, 436
PpsI GAGTC 2 cut(s) 48, 436
PshBI ATTAAT 1 cut(s) 542
PsiI TTATAA 1 cut(s) 293
Psp6I CCWGG 3 cut(s) 183, 346, 603
PspGI CCWGG 3 cut(s) 183, 346, 603
PspN4I GGNNCC 1 cut(s) 222
PsuI RGATCY 1 cut(s) 30
PvuI CGATCG 1 cut(s) 380
RruI TCGCGA 1 cut(s) 382
SaqAI TTAA 4 cut(s) 123, 240, 416, 542
Sau3AI GATC 3 cut(s) 30, 373, 377
SchI GAGTC 2 cut(s) 49, 436
ScrFI CCNGG 3 cut(s) 185, 348, 605
SduI GDGCHC 1 cut(s) 512
SfaNI GCATC 2 cut(s) 178, 634
SmlI CTYRAG 2 cut(s) 14, 659
SmoI CTYRAG 2 cut(s) 14, 659
SsiI CCGC 2 cut(s) 247, 518
SspMI CTAG 2 cut(s) 71, 161
StyD4I CCNGG 3 cut(s) 183, 346, 603
StyI CCWWGG 1 cut(s) 204
TaaI ACNGT 2 cut(s) 502, 560
TaqI TCGA 3 cut(s) 376, 483, 598
TfiI GAWTC 1 cut(s) 20
Tru1I TTAA 4 cut(s) 123, 240, 416, 542
Tru9I TTAA 4 cut(s) 123, 240, 416, 542
TscAI CASTG 2 cut(s) 507, 565
TseFI GTSAC 2 cut(s) 211, 502
Tsp45I GTSAC 2 cut(s) 211, 502
TspDTI ATGAA 6 cut(s) 17, 104, 245, 282, 449, 537
TspRI CASTG 2 cut(s) 507, 565
Van91I CCANNNNNTGG 1 cut(s) 610
VspI ATTAAT 1 cut(s) 542
XagI CCTNNNNNAGG 1 cut(s) 14
XapI RAATTY 6 cut(s) 91, 115, 325, 434, 567, 627
XmnI GAANNNNTTC 1 cut(s) 456
XspI CTAG 2 cut(s) 71, 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.