Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0006075

Physical Location & Seq

Genomic Coordinates Forward (+)

1863389 .. 1870965

Gene Structure 7577 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00388750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGAACGACCTCCTCAAGGATTCTTTTGAGATCCCTCGGGGTCAACCTCCTACTGGTGGAGATATTGAACTAGGAACAGAAGTCTCAATGAATTCTGGAGAACTTGGTTTGGAAAATTTCTTTAAAAAGGTTCAAGAGATTGAGAAACAAAATGAGAAGCTAGATAAGCTTCTGAGAAAGCTCCAGCCTGAAGCTTGTTGTCCTTCCATTATGCTTTTGTACTTTTCTGTTTTTGGAATTTCAGATGTTCTTGATGCCAAATGGGATGATGCACATGAGGAGACCAAGGCTGTGACTAAGGCTCCTTCCATGAAATCCATTAAAAAGCGGATGGAGAAAGATGTAGATGAAGTTGGAAAAATTGCTCGCTTTATAAAGTCAAAAATTGAAGAACTTGACAGAGAGAATTTAGCAAATAGACAGAAACCTGGGTGCGGAAAAGGAACAGGTGTAGATCGATCGCGATCAGCAACAACTCTTGCTTTGAAAAAGAAATTAAAGGACAAAATGGCTGAATTTCAGACTCTAAGAGAAACCATTCATCAAGAGTATCGGGAGGTTGTCGAGAGGCGAGTTTTTACAGTGACGGGCACAAGAGCTGATGAAGAGACAATTGAGAGATTAATTGAGACTGGAGACAGTGAACAAATTTTCCAAAAGGCAATCCACGAACAAGGTCGAGGCCAGGTCATGGACACTCTGGCAGAAATTCAAGAGCGCCATGATGCTGTTAGAGACCTTGAGAAGAAGCTTCTTGATTTACAGCAGATATTTCTTGATATGGCGGTGTTGGTGGATGCACAAGGGGAATTGCTTGACAACATTGAAACCCAAGTATCAAGTGCAGTTGATCACGTACAGCAGGGGAATACTGCTCTGCACAAGGCCAAGAAGCTACAGAAGAGTTCCAGGAAATGGATGTGCATTGCGATCCTCATTCTTCTTATCGTTGTTGTAATCATTGTGGTTGCCGTTTTGAAGCCCTGGAGTAGCAACAACGGTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031201 GO:0031224 GO:0032940 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0061024 GO:0061025 GO:0071840 GO:0071944 GO:0090174 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 ko04721 map04130 map04721

Pfam Domains

Protein Families

SNARE Syntaxin

Protein Analysis

335

Amino Acids

37.83

Weight (kDa)

5.99

Isoelectric Point (pI)

38.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Syntaxin	PF00804	91 - 222	1e-43	Syntaxin
SNARE	PF05739	270 - 322	2.6e-19	SNARE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006075)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03800 AT3G03800 AT5G08080 AT5G08080 AT5G08080 AT5G08080 AT5G08080
fragaria_vesca	FvH4_1g28350 FvH4_1g28350 FvH4_1g28350
malus_domestica	MD12G1006500.v1.1 MD14G1004100.v1.1
prunus_persica	Prupe.7G006600_v2.0.a1
pyrus_communis	pycom12g00480 pycom14g00190
rosa_chinensis	RchiOBHm_Chr3g0496741
rosa_laevigata	RLG00000022509
rosa_multiflora	Rmu_sc0000542.1_g000019
rosa_roxburghii	Rroxscaffold_6G00388750
rosa_rugosa	Rorug03G0286300 Rorug03G0286300 Rorug03G0286300 Rorug03G0286300
rosa_samantha	Rh3AG330900 Rh3BG366900 Rh3DG366700
rosa_wichuraiana	Rw3G028970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	374
AccB7I	CCANNNNNTGG	2 cut(s)	691, 915
AccII	CGCG	1 cut(s)	463
AciI	CCGC	3 cut(s)	328, 435, 785
AclWI	GGATC	2 cut(s)	25, 925
AcsI	RAATTY	7 cut(s)	91, 115, 237, 406, 515, 648, 708
AcuI	CTGAAG	1 cut(s)	210
AfaI	GTAC	2 cut(s)	221, 858
AfiI	CCNNNNNNNGG	6 cut(s)	16, 53, 56, 434, 691, 915
AgsI	TTSAA	7 cut(s)	68, 134, 389, 487, 713, 827, 979
AjnI	CCWGG	4 cut(s)	427, 684, 908, 983
AloI	GAACNNNNNNTCC	2 cut(s)	636, 668
AluBI	AGCT	7 cut(s)	160, 169, 181, 194, 599, 751, 895
AluI	AGCT	7 cut(s)	160, 169, 181, 194, 599, 751, 895
Alw26I	GTCTC	6 cut(s)	88, 275, 602, 623, 630, 729
AlwI	GGATC	2 cut(s)	25, 925
Ama87I	CYCGRG	1 cut(s)	36
AoxI	GGCC	2 cut(s)	682, 885
ApoI	RAATTY	7 cut(s)	91, 115, 237, 406, 515, 648, 708
AseI	ATTAAT	1 cut(s)	623
Asp700I	GAANNNNTTC	1 cut(s)	537
AspLEI	GCGC	1 cut(s)	720
AvaI	CYCGRG	1 cut(s)	36
BaeGI	GKGCMC	1 cut(s)	593
BaeI	ACNNNNGTAYC	2 cut(s)	819, 852
BccI	CCATC	1 cut(s)	325
BceAI	ACGGC	1 cut(s)	956
BciT130I	CCWGG	4 cut(s)	429, 686, 910, 985
BclI	TGATCA	1 cut(s)	850
BcoDI	GTCTC	6 cut(s)	88, 275, 602, 623, 630, 729
BfaI	CTAG	2 cut(s)	71, 161
BfmI	CTRYAG	1 cut(s)	896
BfoI	RGCGCY	1 cut(s)	721
Bme1390I	CCNGG	4 cut(s)	429, 686, 910, 985
BmeT110I	CYCGRG	1 cut(s)	36
BmiI	GGNNCC	1 cut(s)	303
BmrFI	CCNGG	4 cut(s)	429, 686, 910, 985
BmsI	GCATC	4 cut(s)	244, 259, 715, 787
BpmI	CTGGAG	4 cut(s)	117, 167, 654, 1006
BpuEI	CTTGAG	1 cut(s)	761
Bsa29I	ATCGAT	1 cut(s)	457
BsaAI	YACGTR	1 cut(s)	856
BsaBI	GATNNNNATC	1 cut(s)	463
BsaI	GGTCTC	2 cut(s)	275, 729
BsaJI	CCNNGG	4 cut(s)	35, 285, 428, 983
BsaXI	ACNNNNNCTCC	2 cut(s)	286, 316
Bsc4I	CCNNNNNNNGG	6 cut(s)	16, 53, 56, 434, 691, 915
Bse1I	ACTGG	2 cut(s)	58, 637
Bse3DI	GCAATG	1 cut(s)	924
Bse8I	GATNNNNATC	1 cut(s)	463
BseBI	CCWGG	4 cut(s)	429, 686, 910, 985
BseCI	ATCGAT	1 cut(s)	457
BseDI	CCNNGG	4 cut(s)	35, 285, 428, 983
BseGI	GGATG	4 cut(s)	271, 336, 802, 924
BseJI	GATNNNNATC	1 cut(s)	463
BseLI	CCNNNNNNNGG	6 cut(s)	16, 53, 56, 434, 691, 915
BseMI	GCAATG	1 cut(s)	924
BseMII	CTCAG	1 cut(s)	164
BseNI	ACTGG	2 cut(s)	58, 637
BseRI	GAGGAG	1 cut(s)	293
BseSI	GKGCMC	1 cut(s)	593
BsgI	GTGCAG	2 cut(s)	863, 864
Bsh1236I	CGCG	1 cut(s)	463
Bsh1285I	CGRYCG	1 cut(s)	461
BshFI	GGCC	2 cut(s)	684, 887
BshVI	ATCGAT	1 cut(s)	457
BsiEI	CGRYCG	1 cut(s)	461
BsiHKCI	CYCGRG	1 cut(s)	36
BslI	CCNNNNNNNGG	6 cut(s)	16, 53, 56, 434, 691, 915
BsmAI	GTCTC	6 cut(s)	88, 275, 602, 623, 630, 729
BsnI	GGCC	2 cut(s)	684, 887
Bso31I	GGTCTC	2 cut(s)	275, 729
BsoBI	CYCGRG	1 cut(s)	36
Bsp1286I	GDGCHC	1 cut(s)	593
Bsp143I	GATC	6 cut(s)	30, 454, 458, 464, 850, 930
Bsp68I	TCGCGA	1 cut(s)	463
BspACI	CCGC	3 cut(s)	328, 435, 785
BspANI	GGCC	2 cut(s)	684, 887
BspCNI	CTCAG	1 cut(s)	165
BspDI	ATCGAT	1 cut(s)	457
BspFNI	CGCG	1 cut(s)	463
BspLI	GGNNCC	1 cut(s)	303
BspPI	GGATC	2 cut(s)	25, 925
BspTNI	GGTCTC	2 cut(s)	275, 729
BsrDI	GCAATG	1 cut(s)	924
BsrI	ACTGG	2 cut(s)	58, 637
BssECI	CCNNGG	4 cut(s)	35, 285, 428, 983
BssMI	GATC	6 cut(s)	30, 454, 458, 464, 850, 930
BssT1I	CCWWGG	1 cut(s)	285
Bst2UI	CCWGG	4 cut(s)	429, 686, 910, 985
Bst4CI	ACNGT	3 cut(s)	583, 641, 1001
Bst6I	CTCTTC	2 cut(s)	600, 896
BstBAI	YACGTR	1 cut(s)	856
BstC8I	GCNNGC	1 cut(s)	367
BstDEI	CTNAG	3 cut(s)	173, 297, 527
BstENI	CCTNNNNNAGG	1 cut(s)	14
BstF5I	GGATG	4 cut(s)	271, 336, 802, 924
BstFNI	CGCG	1 cut(s)	463
BstH2I	RGCGCY	1 cut(s)	721
BstHHI	GCGC	1 cut(s)	720
BstKTI	GATC	6 cut(s)	33, 457, 461, 467, 853, 933
BstMAI	GTCTC	6 cut(s)	88, 275, 602, 623, 630, 729
BstMBI	GATC	6 cut(s)	30, 454, 458, 464, 850, 930
BstMCI	CGRYCG	1 cut(s)	461
BstMWI	GCNNNNNNNGC	1 cut(s)	166
BstNI	CCWGG	4 cut(s)	429, 686, 910, 985
BstSCI	CCNGG	4 cut(s)	427, 684, 908, 983
BstSFI	CTRYAG	1 cut(s)	896
BstSLI	GKGCMC	1 cut(s)	593
BstUI	CGCG	1 cut(s)	463
BstX2I	RGATCY	1 cut(s)	30
BstYI	RGATCY	1 cut(s)	30
Bsu15I	ATCGAT	1 cut(s)	457
BsuRI	GGCC	2 cut(s)	684, 887
BsuTUI	ATCGAT	1 cut(s)	457
BtsCI	GGATG	4 cut(s)	271, 336, 802, 924
BtsIMutI	CAGTG	2 cut(s)	588, 646
BtuMI	TCGCGA	1 cut(s)	463
Cac8I	GCNNGC	1 cut(s)	367
CfoI	GCGC	1 cut(s)	720
ClaI	ATCGAT	1 cut(s)	457
Csp6I	GTAC	2 cut(s)	220, 857
CviAII	CATG	4 cut(s)	275, 310, 691, 722
CviQI	GTAC	2 cut(s)	220, 857
DdeI	CTNAG	3 cut(s)	173, 297, 527
DpnI	GATC	6 cut(s)	32, 456, 460, 466, 852, 932
DpnII	GATC	6 cut(s)	30, 454, 458, 464, 850, 930
DraI	TTTAAA	1 cut(s)	124
Eam1104I	CTCTTC	2 cut(s)	600, 896
EarI	CTCTTC	2 cut(s)	600, 896
Eco130I	CCWWGG	1 cut(s)	285
Eco31I	GGTCTC	2 cut(s)	275, 729
Eco57I	CTGAAG	1 cut(s)	210
Eco88I	CYCGRG	1 cut(s)	36
EcoNI	CCTNNNNNAGG	1 cut(s)	14
EcoRI	GAATTC	1 cut(s)	91
EcoRII	CCWGG	4 cut(s)	427, 684, 908, 983
EcoT14I	CCWWGG	1 cut(s)	285
ErhI	CCWWGG	1 cut(s)	285
FaeI	CATG	4 cut(s)	278, 313, 694, 725
FaiI	YATR	7 cut(s)	212, 276, 311, 374, 692, 723, 782
FatI	CATG	4 cut(s)	274, 309, 690, 721
FbaI	TGATCA	1 cut(s)	850
FokI	GGATG	4 cut(s)	278, 343, 809, 931
FspBI	CTAG	2 cut(s)	71, 161
GlaI	GCGC	1 cut(s)	719
GsuI	CTGGAG	4 cut(s)	117, 167, 654, 1006
HaeII	RGCGCY	1 cut(s)	721
HaeIII	GGCC	2 cut(s)	684, 887
HhaI	GCGC	1 cut(s)	720
Hin1II	CATG	4 cut(s)	278, 313, 694, 725
Hin6I	GCGC	1 cut(s)	718
HinP1I	GCGC	1 cut(s)	718
HincII	GTYRAC	1 cut(s)	44
HindII	GTYRAC	1 cut(s)	44
HindIII	AAGCTT	3 cut(s)	167, 192, 749
HinfI	GANTC	2 cut(s)	20, 523
Hpy166II	GTNNAC	2 cut(s)	44, 644
Hpy188I	TCNGA	3 cut(s)	174, 244, 522
Hpy8I	GTNNAC	2 cut(s)	44, 644
HpyAV	CCTTC	2 cut(s)	213, 315
HpyCH4III	ACNGT	3 cut(s)	583, 641, 1001
HpyCH4IV	ACGT	1 cut(s)	855
HpyCH4V	TGCA	5 cut(s)	272, 800, 845, 880, 924
HpyF10VI	GCNNNNNNNGC	1 cut(s)	166
HpyF3I	CTNAG	3 cut(s)	173, 297, 527
HpySE526I	ACGT	1 cut(s)	855
Hsp92II	CATG	4 cut(s)	278, 313, 694, 725
HspAI	GCGC	1 cut(s)	718
Ksp22I	TGATCA	1 cut(s)	850
Kzo9I	GATC	6 cut(s)	30, 454, 458, 464, 850, 930
LmnI	GCTCC	2 cut(s)	186, 307
LweI	GCATC	4 cut(s)	244, 259, 715, 787
MaeI	CTAG	2 cut(s)	71, 161
MaeII	ACGT	1 cut(s)	855
MaeIII	GTNAC	2 cut(s)	292, 583
MalI	GATC	6 cut(s)	32, 456, 460, 466, 852, 932
MboI	GATC	6 cut(s)	30, 454, 458, 464, 850, 930
MboII	GAAGA	5 cut(s)	401, 617, 757, 913, 932
MfeI	CAATTG	1 cut(s)	612
MflI	RGATCY	1 cut(s)	30
MhlI	GDGCHC	1 cut(s)	593
MlyI	GAGTC	1 cut(s)	517
MmeI	TCCRAC	1 cut(s)	334
MnlI	CCTC	9 cut(s)	20, 23, 45, 57, 271, 550, 561, 674, 944
MroXI	GAANNNNTTC	1 cut(s)	537
MseI	TTAA	5 cut(s)	123, 321, 497, 623, 1006
MspR9I	CCNGG	4 cut(s)	429, 686, 910, 985
MunI	CAATTG	1 cut(s)	612
MvaI	CCWGG	4 cut(s)	429, 686, 910, 985
MvnI	CGCG	1 cut(s)	463
MwoI	GCNNNNNNNGC	1 cut(s)	166
NdeII	GATC	6 cut(s)	30, 454, 458, 464, 850, 930
NlaIII	CATG	4 cut(s)	278, 313, 694, 725
NlaIV	GGNNCC	1 cut(s)	303
NmuCI	GTSAC	2 cut(s)	292, 583
NruI	TCGCGA	1 cut(s)	463
PdmI	GAANNNNTTC	1 cut(s)	537
PfeI	GAWTC	1 cut(s)	20
PflMI	CCANNNNNTGG	2 cut(s)	691, 915
PfoI	TCCNGGA	1 cut(s)	908
Ple19I	CGATCG	1 cut(s)	461
PleI	GAGTC	1 cut(s)	517
PpsI	GAGTC	1 cut(s)	517
Ppu21I	YACGTR	1 cut(s)	856
PshBI	ATTAAT	1 cut(s)	623
PsiI	TTATAA	1 cut(s)	374
Psp6I	CCWGG	4 cut(s)	427, 684, 908, 983
PspGI	CCWGG	4 cut(s)	427, 684, 908, 983
PspN4I	GGNNCC	1 cut(s)	303
PsuI	RGATCY	1 cut(s)	30
PvuI	CGATCG	1 cut(s)	461
RruI	TCGCGA	1 cut(s)	463
RsaI	GTAC	2 cut(s)	221, 858
RsaNI	GTAC	2 cut(s)	220, 857
SaqAI	TTAA	5 cut(s)	123, 321, 497, 623, 1006
Sau3AI	GATC	6 cut(s)	30, 454, 458, 464, 850, 930
SchI	GAGTC	1 cut(s)	517
ScrFI	CCNGG	4 cut(s)	429, 686, 910, 985
SduI	GDGCHC	1 cut(s)	593
SfaNI	GCATC	4 cut(s)	244, 259, 715, 787
SfcI	CTRYAG	1 cut(s)	896
SmlI	CTYRAG	2 cut(s)	14, 740
SmoI	CTYRAG	2 cut(s)	14, 740
SsiI	CCGC	3 cut(s)	328, 435, 785
SspMI	CTAG	2 cut(s)	71, 161
StyD4I	CCNGG	4 cut(s)	427, 684, 908, 983
StyI	CCWWGG	1 cut(s)	285
TaaI	ACNGT	3 cut(s)	583, 641, 1001
TaiI	ACGT	1 cut(s)	858
TaqI	TCGA	3 cut(s)	457, 564, 679
TatI	WGTACW	1 cut(s)	219
TfiI	GAWTC	1 cut(s)	20
Tru1I	TTAA	5 cut(s)	123, 321, 497, 623, 1006
Tru9I	TTAA	5 cut(s)	123, 321, 497, 623, 1006
TscAI	CASTG	2 cut(s)	588, 646
TseFI	GTSAC	2 cut(s)	292, 583
Tsp45I	GTSAC	2 cut(s)	292, 583
TspDTI	ATGAA	6 cut(s)	17, 104, 326, 363, 530, 618
TspRI	CASTG	2 cut(s)	588, 646
Van91I	CCANNNNNTGG	2 cut(s)	691, 915
VspI	ATTAAT	1 cut(s)	623
XagI	CCTNNNNNAGG	1 cut(s)	14
XapI	RAATTY	7 cut(s)	91, 115, 237, 406, 515, 648, 708
XmnI	GAANNNNTTC	1 cut(s)	537
XspI	CTAG	2 cut(s)	71, 161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.