Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0006075

Physical Location & Seq

Genomic Coordinates Forward (+)

761075 .. 765228

Gene Structure 4154 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1006500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGAACGACCTGCTAAAGGATTCTTTTGAGATCTCTCGGGGTCAAGCTTTGAGAGATGGAGATATCGAACTAGGAGCACATGCTTCAATGAATTCTGGAGAACTTGGTTTGGAGGATTTTTTCAAAAAGGTTCAAGAGATCGAGAAGCAAAACGAGAAGCTTGATAAACTTTTGAAAAAGCTCCAGGATGCACATGAAGAGTCCAAGGCTGTTACTAAGGCTCCTTCCATGAAATCAATCAAGCAACGAATGGAGAAAGATGTTGACGAAGTTGGAAAAGTTGCTCGATGGATAAAGTCAAAAATTGAAGAACTTGACAAAGGGAATTTAGCAAATAGACAGAAGGCTGGTTGCGGAAAGGGAACAGGTGTAGATAGATCCCGAACAGCAACAACCCTTGCCTTGAAAAAGAAATTAAGGGACAAGATGACTGAATTTCAGACTCTAAGGGACACCATCCATCAAGAGTATCGTGATGTTGTCGAGAGGCGAGTTTTTACAGTGACGGGTGCAAGAGCTGATGAAGAGACAATTGAAAGACTAATCGAGACAGGAGACAGTGAACAAATTTTCCAGAAGGCAATCCAAGAACAAGGGCGAGGCCAGATAATGGACACTCTGGCCGAAATTCAAGAGCGACATGATGCTGTTAGAGATCTTGAGAGGAAGCTTCTCGATTTACAACAGATATTTCTGGATATGGCGGTGCTGGTCGATGCACAAGGGGACTTGCTTAACAACATAGAAACCCAGGTATCGAGTGCGGTAGATCATGTACAGCAAGGGAACAATGCTCTTCAGAAGGCCAAGAAGCTACAAAAGAGTTCGAGGAAATGGATGTGCATTGCGATCCTCATCCTTCTTATCATCGTTGCAATCATCGCGGTGGCGGTGTTAAAACCATGGAGTAGTAACAATGGTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031201 GO:0031224 GO:0032940 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0061024 GO:0061025 GO:0071840 GO:0071944 GO:0090174 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 ko04721 map04130 map04721

Pfam Domains

Protein Families

SNARE Syntaxin

Protein Analysis

309

Amino Acids

34.72

Weight (kDa)

6.99

Isoelectric Point (pI)

40.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Syntaxin	PF00804	36 - 195	4.3e-51	Syntaxin
SNARE	PF05739	244 - 294	5.4e-18	SNARE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006075)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03800 AT3G03800 AT5G08080 AT5G08080 AT5G08080 AT5G08080 AT5G08080
fragaria_vesca	FvH4_1g28350 FvH4_1g28350 FvH4_1g28350
malus_domestica	MD12G1006500.v1.1 MD14G1004100.v1.1
prunus_persica	Prupe.7G006600_v2.0.a1
pyrus_communis	pycom12g00480 pycom14g00190
rosa_chinensis	RchiOBHm_Chr3g0496741
rosa_laevigata	RLG00000022509
rosa_multiflora	Rmu_sc0000542.1_g000019
rosa_roxburghii	Rroxscaffold_6G00388750
rosa_rugosa	Rorug03G0286300 Rorug03G0286300 Rorug03G0286300 Rorug03G0286300
rosa_samantha	Rh3AG330900 Rh3BG366900 Rh3DG366700
rosa_wichuraiana	Rw3G028970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	18
AccB7I	CCANNNNNTGG	1 cut(s)	610
AccII	CGCG	1 cut(s)	884
AciI	CCGC	5 cut(s)	354, 704, 764, 884, 890
AclWI	GGATC	2 cut(s)	372, 844
AcoI	YGGCCR	1 cut(s)	621
AcsI	RAATTY	5 cut(s)	91, 325, 434, 567, 627
AcuI	CTGAAG	1 cut(s)	782
AfaI	GTAC	1 cut(s)	777
AfiI	CCNNNNNNNGG	2 cut(s)	16, 610
AgsI	TTSAA	8 cut(s)	87, 124, 134, 175, 308, 406, 536, 632
AjnI	CCWGG	2 cut(s)	183, 750
AloI	GAACNNNNNNTCC	2 cut(s)	555, 587
AluBI	AGCT	6 cut(s)	47, 160, 181, 518, 670, 814
AluI	AGCT	6 cut(s)	47, 160, 181, 518, 670, 814
Alw21I	GWGCWC	1 cut(s)	79
Alw26I	GTCTC	3 cut(s)	521, 542, 549
AlwI	GGATC	2 cut(s)	372, 844
Ama87I	CYCGRG	1 cut(s)	36
AoxI	GGCC	3 cut(s)	601, 621, 804
ApoI	RAATTY	5 cut(s)	91, 325, 434, 567, 627
AvaI	CYCGRG	1 cut(s)	36
BaeI	ACNNNNGTAYC	2 cut(s)	738, 771
Bbv12I	GWGCWC	1 cut(s)	79
BccI	CCATC	4 cut(s)	50, 282, 464, 468
BciT130I	CCWGG	2 cut(s)	185, 752
BcoDI	GTCTC	3 cut(s)	521, 542, 549
BfaI	CTAG	1 cut(s)	71
BfuAI	ACCTGC	1 cut(s)	18
BglII	AGATCT	2 cut(s)	30, 655
Bme1390I	CCNGG	2 cut(s)	185, 752
BmeT110I	CYCGRG	1 cut(s)	36
BmiI	GGNNCC	1 cut(s)	222
BmrFI	CCNGG	2 cut(s)	185, 752
BmsI	GCATC	3 cut(s)	178, 634, 706
BpmI	CTGGAG	2 cut(s)	117, 167
BpuEI	CTTGAG	1 cut(s)	680
BsaBI	GATNNNNATC	1 cut(s)	854
BsaJI	CCNNGG	3 cut(s)	204, 750, 902
BsaXI	ACNNNNNCTCC	2 cut(s)	205, 235
Bsc4I	CCNNNNNNNGG	2 cut(s)	16, 610
Bse3DI	GCAATG	1 cut(s)	843
Bse8I	GATNNNNATC	1 cut(s)	854
BseBI	CCWGG	2 cut(s)	185, 752
BseDI	CCNNGG	3 cut(s)	204, 750, 902
BseGI	GGATG	4 cut(s)	193, 456, 843, 855
BseJI	GATNNNNATC	1 cut(s)	854
BseLI	CCNNNNNNNGG	2 cut(s)	16, 610
BseMI	GCAATG	1 cut(s)	843
Bsh1236I	CGCG	1 cut(s)	884
BshFI	GGCC	3 cut(s)	603, 623, 806
BsiHKAI	GWGCWC	1 cut(s)	79
BsiHKCI	CYCGRG	1 cut(s)	36
BslFI	GGGAC	3 cut(s)	434, 464, 740
BslI	CCNNNNNNNGG	2 cut(s)	16, 610
BsmAI	GTCTC	3 cut(s)	521, 542, 549
BsmFI	GGGAC	3 cut(s)	434, 464, 740
BsnI	GGCC	3 cut(s)	603, 623, 806
BsoBI	CYCGRG	1 cut(s)	36
Bsp1286I	GDGCHC	1 cut(s)	79
Bsp1407I	TGTACA	1 cut(s)	775
Bsp143I	GATC	6 cut(s)	30, 138, 377, 655, 769, 849
Bsp19I	CCATGG	1 cut(s)	902
BspACI	CCGC	5 cut(s)	354, 704, 764, 884, 890
BspANI	GGCC	3 cut(s)	603, 623, 806
BspFNI	CGCG	1 cut(s)	884
BspLI	GGNNCC	1 cut(s)	222
BspMI	ACCTGC	1 cut(s)	18
BspPI	GGATC	2 cut(s)	372, 844
BspQI	GCTCTTC	1 cut(s)	801
BsrDI	GCAATG	1 cut(s)	843
BsrGI	TGTACA	1 cut(s)	775
BssECI	CCNNGG	3 cut(s)	204, 750, 902
BssMI	GATC	6 cut(s)	30, 138, 377, 655, 769, 849
BssT1I	CCWWGG	2 cut(s)	204, 902
Bst2UI	CCWGG	2 cut(s)	185, 752
Bst4CI	ACNGT	2 cut(s)	502, 560
Bst6I	CTCTTC	3 cut(s)	192, 519, 801
BstAUI	TGTACA	1 cut(s)	775
BstDEI	CTNAG	2 cut(s)	216, 446
BstDSI	CCRYGG	1 cut(s)	902
BstENI	CCTNNNNNAGG	1 cut(s)	14
BstF5I	GGATG	4 cut(s)	193, 456, 843, 855
BstFNI	CGCG	1 cut(s)	884
BstKTI	GATC	6 cut(s)	33, 141, 380, 658, 772, 852
BstMAI	GTCTC	3 cut(s)	521, 542, 549
BstMBI	GATC	6 cut(s)	30, 138, 377, 655, 769, 849
BstMWI	GCNNNNNNNGC	1 cut(s)	881
BstNI	CCWGG	2 cut(s)	185, 752
BstNSI	RCATGY	1 cut(s)	83
BstSCI	CCNGG	2 cut(s)	183, 750
BstUI	CGCG	1 cut(s)	884
BstX2I	RGATCY	3 cut(s)	30, 377, 655
BstYI	RGATCY	3 cut(s)	30, 377, 655
BsuRI	GGCC	3 cut(s)	603, 623, 806
BtgI	CCRYGG	1 cut(s)	902
BtgZI	GCGATG	1 cut(s)	865
BtsCI	GGATG	4 cut(s)	193, 456, 843, 855
BtsIMutI	CAGTG	2 cut(s)	507, 565
BveI	ACCTGC	1 cut(s)	18
Csp6I	GTAC	1 cut(s)	776
CviAII	CATG	6 cut(s)	80, 194, 229, 641, 773, 903
CviQI	GTAC	1 cut(s)	776
DdeI	CTNAG	2 cut(s)	216, 446
DpnI	GATC	6 cut(s)	32, 140, 379, 657, 771, 851
DpnII	GATC	6 cut(s)	30, 138, 377, 655, 769, 849
EaeI	YGGCCR	1 cut(s)	621
Eam1104I	CTCTTC	3 cut(s)	192, 519, 801
EarI	CTCTTC	3 cut(s)	192, 519, 801
Eco130I	CCWWGG	2 cut(s)	204, 902
Eco32I	GATATC	1 cut(s)	64
Eco57I	CTGAAG	1 cut(s)	782
Eco88I	CYCGRG	1 cut(s)	36
EcoNI	CCTNNNNNAGG	1 cut(s)	14
EcoRI	GAATTC	1 cut(s)	91
EcoRII	CCWGG	2 cut(s)	183, 750
EcoRV	GATATC	1 cut(s)	64
EcoT14I	CCWWGG	2 cut(s)	204, 902
ErhI	CCWWGG	2 cut(s)	204, 902
FaeI	CATG	6 cut(s)	83, 197, 232, 644, 776, 906
FaiI	YATR	8 cut(s)	81, 195, 230, 642, 701, 743, 774, 904
FaqI	GGGAC	3 cut(s)	434, 464, 740
FatI	CATG	6 cut(s)	79, 193, 228, 640, 772, 902
FokI	GGATG	4 cut(s)	200, 443, 842, 850
FspBI	CTAG	1 cut(s)	71
GsuI	CTGGAG	2 cut(s)	117, 167
HaeIII	GGCC	3 cut(s)	603, 623, 806
Hin1II	CATG	6 cut(s)	83, 197, 232, 644, 776, 906
HincII	GTYRAC	1 cut(s)	265
HindII	GTYRAC	1 cut(s)	265
HindIII	AAGCTT	3 cut(s)	45, 158, 668
HinfI	GANTC	3 cut(s)	20, 200, 442
Hpy166II	GTNNAC	2 cut(s)	265, 563
Hpy188I	TCNGA	2 cut(s)	441, 801
Hpy8I	GTNNAC	2 cut(s)	265, 563
HpyAV	CCTTC	5 cut(s)	234, 337, 571, 796, 869
HpyCH4III	ACNGT	2 cut(s)	502, 560
HpyCH4V	TGCA	5 cut(s)	191, 512, 719, 843, 875
HpyF10VI	GCNNNNNNNGC	1 cut(s)	881
HpyF3I	CTNAG	2 cut(s)	216, 446
Hsp92II	CATG	6 cut(s)	83, 197, 232, 644, 776, 906
Kzo9I	GATC	6 cut(s)	30, 138, 377, 655, 769, 849
LguI	GCTCTTC	1 cut(s)	801
LmnI	GCTCC	3 cut(s)	74, 186, 226
LweI	GCATC	3 cut(s)	178, 634, 706
MaeI	CTAG	1 cut(s)	71
MaeIII	GTNAC	3 cut(s)	211, 502, 911
MalI	GATC	6 cut(s)	32, 140, 379, 657, 771, 851
MboI	GATC	6 cut(s)	30, 138, 377, 655, 769, 849
MboII	GAAGA	4 cut(s)	209, 320, 536, 788
MfeI	CAATTG	1 cut(s)	531
MflI	RGATCY	3 cut(s)	30, 377, 655
MhlI	GDGCHC	1 cut(s)	79
MluCI	AATT	8 cut(s)	91, 303, 325, 413, 434, 531, 567, 627
MlyI	GAGTC	2 cut(s)	209, 436
MmeI	TCCRAC	1 cut(s)	253
MnlI	CCTC	6 cut(s)	106, 480, 593, 657, 822, 863
MseI	TTAA	4 cut(s)	416, 735, 896, 925
MslI	CAYNNNNRTG	1 cut(s)	884
MspR9I	CCNGG	2 cut(s)	185, 752
MunI	CAATTG	1 cut(s)	531
MvaI	CCWGG	2 cut(s)	185, 752
MvnI	CGCG	1 cut(s)	884
MwoI	GCNNNNNNNGC	1 cut(s)	881
NcoI	CCATGG	1 cut(s)	902
NdeII	GATC	6 cut(s)	30, 138, 377, 655, 769, 849
NlaIII	CATG	6 cut(s)	83, 197, 232, 644, 776, 906
NlaIV	GGNNCC	1 cut(s)	222
NmuCI	GTSAC	1 cut(s)	502
NspI	RCATGY	1 cut(s)	83
PciSI	GCTCTTC	1 cut(s)	801
PfeI	GAWTC	1 cut(s)	20
PflMI	CCANNNNNTGG	1 cut(s)	610
PfoI	TCCNGGA	1 cut(s)	183
PleI	GAGTC	2 cut(s)	208, 436
PpsI	GAGTC	2 cut(s)	208, 436
Psp6I	CCWGG	2 cut(s)	183, 750
PspGI	CCWGG	2 cut(s)	183, 750
PspN4I	GGNNCC	1 cut(s)	222
PsuI	RGATCY	3 cut(s)	30, 377, 655
RsaI	GTAC	1 cut(s)	777
RsaNI	GTAC	1 cut(s)	776
RseI	CAYNNNNRTG	1 cut(s)	884
SapI	GCTCTTC	1 cut(s)	801
SaqAI	TTAA	4 cut(s)	416, 735, 896, 925
Sau3AI	GATC	6 cut(s)	30, 138, 377, 655, 769, 849
SchI	GAGTC	2 cut(s)	209, 436
ScrFI	CCNGG	2 cut(s)	185, 752
SduI	GDGCHC	1 cut(s)	79
SfaNI	GCATC	3 cut(s)	178, 634, 706
SmiMI	CAYNNNNRTG	1 cut(s)	884
SmlI	CTYRAG	1 cut(s)	659
SmoI	CTYRAG	1 cut(s)	659
Sse9I	AATT	8 cut(s)	91, 303, 325, 413, 434, 531, 567, 627
SsiI	CCGC	5 cut(s)	354, 704, 764, 884, 890
SspMI	CTAG	1 cut(s)	71
StyD4I	CCNGG	2 cut(s)	183, 750
StyI	CCWWGG	2 cut(s)	204, 902
TaaI	ACNGT	2 cut(s)	502, 560
TaqI	TCGA	9 cut(s)	66, 141, 286, 483, 546, 675, 714, 758, 827
TasI	AATT	8 cut(s)	91, 303, 325, 413, 434, 531, 567, 627
TatI	WGTACW	1 cut(s)	775
TfiI	GAWTC	1 cut(s)	20
Tru1I	TTAA	4 cut(s)	416, 735, 896, 925
Tru9I	TTAA	4 cut(s)	416, 735, 896, 925
TscAI	CASTG	2 cut(s)	507, 565
TseFI	GTSAC	1 cut(s)	502
Tsp45I	GTSAC	1 cut(s)	502
TspDTI	ATGAA	5 cut(s)	17, 104, 210, 245, 537
TspRI	CASTG	2 cut(s)	507, 565
Van91I	CCANNNNNTGG	1 cut(s)	610
XagI	CCTNNNNNAGG	1 cut(s)	14
XapI	RAATTY	5 cut(s)	91, 325, 434, 567, 627
XceI	RCATGY	1 cut(s)	83
XspI	CTAG	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.