Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_samantha

Chromosome

Unknown

Orthogroup ID

OG0006075

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG366900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGAACGACCTCCTCAAGGATTCTTTTGAGATCCCTCGGGGTCAACCTCCTACCGGTGGAGATATTGAACTAGGAACAGAAGTCTCAATGAATTCTGGAGAACTTGGTTTGGAAAATTTCTTTAAAAAGGTTCAAGAGATTGAGAAACAAAATGAGAAGCTAGATAAGCTTCTGAGAAAGCTCCAGGATGCACATGAGGAGACCAAGGCTGTGACTAAGGCTCCTTCCATGAAATCCATTAAAAAGCGGATGGAGAAAGATGTAGATGAAGTTGGAAAAATTGCTCGCTTTATAAAGTCAAAAATTGAAGAACTTGACAGAGAGAATTTAGCAAATAGACAGAAACCTGGGTGTGGAAAAGGAACAGGTGTAGATCGATCGCGAACAGCAACAACTCTTGCTTTGAAAAAGAAATTAAAGGACAAGATGGCTGAATTTCAGACTCTAAGAGAAACCATTCATCAAGAGTATCGGGAGGTTGTCGAGAGGCGAGTTTTTACAGTGACGGGCACAAGAGCTGATGAAGAGACAATTGAGAGATTAATTGAGACTGGAGACAGTGAACAAATTTTCCAAAAGGCAATCCATGAACAAGGTCGAGGCCAGGTCATGGACACTCTGGCAGAAATTCAAGAGCGCCATGATGCTGTTAGAGACCTTGAGAAGAAGCTTCTTGATTTACAGCAGATATTTCTTGATATGGCGGTGTTGGTGGATGCACAAGGGGAATTGCTTGACAACATTGAAACCCAAGTATCAAGTGCAGTTGATCATGTACAGCAGGGGAATACTGCTCTGCACAAGGCCAAGAAGCTACAGAAGAGTTCCAGGAAATGGATGTGCATTGCGATCCTCATTCTTCTTATTGTTGTTGTAATCATTGTGGTTGCCGTGTTGAAGCCATGGAGTAGCAACAACGGTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031201 GO:0031224 GO:0032940 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0061024 GO:0061025 GO:0071840 GO:0071944 GO:0090174 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 ko04721 map04130 map04721

Pfam Domains

Protein Families

SNARE Syntaxin

Protein Analysis

308

Amino Acids

34.84

Weight (kDa)

6.64

Isoelectric Point (pI)

36.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Syntaxin	PF00804	36 - 195	1.2e-52	Syntaxin
SNARE	PF05739	243 - 295	2.3e-19	SNARE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006075)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03800 AT3G03800 AT5G08080 AT5G08080 AT5G08080 AT5G08080 AT5G08080
fragaria_vesca	FvH4_1g28350 FvH4_1g28350 FvH4_1g28350
malus_domestica	MD12G1006500.v1.1 MD14G1004100.v1.1
prunus_persica	Prupe.7G006600_v2.0.a1
pyrus_communis	pycom12g00480 pycom14g00190
rosa_chinensis	RchiOBHm_Chr3g0496741
rosa_laevigata	RLG00000022509
rosa_multiflora	Rmu_sc0000542.1_g000019
rosa_roxburghii	Rroxscaffold_6G00388750
rosa_rugosa	Rorug03G0286300 Rorug03G0286300 Rorug03G0286300 Rorug03G0286300
rosa_samantha	Rh3AG330900 Rh3BG366900 Rh3DG366700
rosa_wichuraiana	Rw3G028970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	293
AccB7I	CCANNNNNTGG	2 cut(s)	610, 834
AccII	CGCG	1 cut(s)	382
AciI	CCGC	2 cut(s)	247, 704
AclWI	GGATC	2 cut(s)	25, 844
AcsI	RAATTY	6 cut(s)	91, 115, 325, 434, 567, 627
AfaI	GTAC	1 cut(s)	777
AfiI	CCNNNNNNNGG	6 cut(s)	16, 53, 56, 353, 610, 834
AgeI	ACCGGT	1 cut(s)	53
AgsI	TTSAA	7 cut(s)	68, 134, 308, 406, 632, 746, 898
AjnI	CCWGG	4 cut(s)	183, 346, 603, 827
AloI	GAACNNNNNNTCC	2 cut(s)	555, 587
AluBI	AGCT	6 cut(s)	160, 169, 181, 518, 670, 814
AluI	AGCT	6 cut(s)	160, 169, 181, 518, 670, 814
Alw26I	GTCTC	6 cut(s)	88, 194, 521, 542, 549, 648
AlwI	GGATC	2 cut(s)	25, 844
Ama87I	CYCGRG	1 cut(s)	36
AoxI	GGCC	2 cut(s)	601, 804
ApoI	RAATTY	6 cut(s)	91, 115, 325, 434, 567, 627
AseI	ATTAAT	1 cut(s)	542
AsiGI	ACCGGT	1 cut(s)	53
Asp700I	GAANNNNTTC	1 cut(s)	456
AspLEI	GCGC	1 cut(s)	639
AvaI	CYCGRG	1 cut(s)	36
BaeGI	GKGCMC	1 cut(s)	512
BaeI	ACNNNNGTAYC	2 cut(s)	738, 771
BccI	CCATC	2 cut(s)	244, 421
BceAI	ACGGC	1 cut(s)	875
BciT130I	CCWGG	4 cut(s)	185, 348, 605, 829
BclI	TGATCA	1 cut(s)	769
BcoDI	GTCTC	6 cut(s)	88, 194, 521, 542, 549, 648
BfaI	CTAG	2 cut(s)	71, 161
BfmI	CTRYAG	1 cut(s)	815
BfoI	RGCGCY	1 cut(s)	640
Bme1390I	CCNGG	4 cut(s)	185, 348, 605, 829
BmeT110I	CYCGRG	1 cut(s)	36
BmiI	GGNNCC	1 cut(s)	222
BmrFI	CCNGG	4 cut(s)	185, 348, 605, 829
BmsI	GCATC	3 cut(s)	178, 634, 706
BpmI	CTGGAG	3 cut(s)	117, 167, 573
BpuEI	CTTGAG	1 cut(s)	680
Bsa29I	ATCGAT	1 cut(s)	376
BsaI	GGTCTC	2 cut(s)	194, 648
BsaJI	CCNNGG	4 cut(s)	35, 204, 347, 902
BsaWI	WCCGGW	1 cut(s)	53
BsaXI	ACNNNNNCTCC	2 cut(s)	205, 235
Bsc4I	CCNNNNNNNGG	6 cut(s)	16, 53, 56, 353, 610, 834
Bse118I	RCCGGY	1 cut(s)	53
Bse1I	ACTGG	1 cut(s)	556
Bse3DI	GCAATG	1 cut(s)	843
BseBI	CCWGG	4 cut(s)	185, 348, 605, 829
BseCI	ATCGAT	1 cut(s)	376
BseDI	CCNNGG	4 cut(s)	35, 204, 347, 902
BseGI	GGATG	4 cut(s)	193, 255, 721, 843
BseLI	CCNNNNNNNGG	6 cut(s)	16, 53, 56, 353, 610, 834
BseMI	GCAATG	1 cut(s)	843
BseMII	CTCAG	1 cut(s)	164
BseNI	ACTGG	1 cut(s)	556
BseRI	GAGGAG	1 cut(s)	212
BseSI	GKGCMC	1 cut(s)	512
BsgI	GTGCAG	2 cut(s)	782, 783
Bsh1236I	CGCG	1 cut(s)	382
Bsh1285I	CGRYCG	1 cut(s)	380
BshFI	GGCC	2 cut(s)	603, 806
BshTI	ACCGGT	1 cut(s)	53
BshVI	ATCGAT	1 cut(s)	376
BsiEI	CGRYCG	1 cut(s)	380
BsiHKCI	CYCGRG	1 cut(s)	36
BsiSI	CCGG	1 cut(s)	54
BslI	CCNNNNNNNGG	6 cut(s)	16, 53, 56, 353, 610, 834
BsmAI	GTCTC	6 cut(s)	88, 194, 521, 542, 549, 648
BsnI	GGCC	2 cut(s)	603, 806
Bso31I	GGTCTC	2 cut(s)	194, 648
BsoBI	CYCGRG	1 cut(s)	36
Bsp1286I	GDGCHC	1 cut(s)	512
Bsp1407I	TGTACA	1 cut(s)	775
Bsp143I	GATC	5 cut(s)	30, 373, 377, 769, 849
Bsp19I	CCATGG	1 cut(s)	902
Bsp68I	TCGCGA	1 cut(s)	382
BspACI	CCGC	2 cut(s)	247, 704
BspANI	GGCC	2 cut(s)	603, 806
BspCNI	CTCAG	1 cut(s)	165
BspDI	ATCGAT	1 cut(s)	376
BspFNI	CGCG	1 cut(s)	382
BspLI	GGNNCC	1 cut(s)	222
BspPI	GGATC	2 cut(s)	25, 844
BspTNI	GGTCTC	2 cut(s)	194, 648
BsrDI	GCAATG	1 cut(s)	843
BsrFI	RCCGGY	1 cut(s)	53
BsrGI	TGTACA	1 cut(s)	775
BsrI	ACTGG	1 cut(s)	556
BssAI	RCCGGY	1 cut(s)	53
BssECI	CCNNGG	4 cut(s)	35, 204, 347, 902
BssMI	GATC	5 cut(s)	30, 373, 377, 769, 849
BssT1I	CCWWGG	2 cut(s)	204, 902
Bst2UI	CCWGG	4 cut(s)	185, 348, 605, 829
Bst4CI	ACNGT	3 cut(s)	502, 560, 920
Bst6I	CTCTTC	2 cut(s)	519, 815
BstAUI	TGTACA	1 cut(s)	775
BstC8I	GCNNGC	1 cut(s)	286
BstDEI	CTNAG	3 cut(s)	173, 216, 446
BstDSI	CCRYGG	1 cut(s)	902
BstENI	CCTNNNNNAGG	1 cut(s)	14
BstF5I	GGATG	4 cut(s)	193, 255, 721, 843
BstFNI	CGCG	1 cut(s)	382
BstH2I	RGCGCY	1 cut(s)	640
BstHHI	GCGC	1 cut(s)	639
BstKTI	GATC	5 cut(s)	33, 376, 380, 772, 852
BstMAI	GTCTC	6 cut(s)	88, 194, 521, 542, 549, 648
BstMBI	GATC	5 cut(s)	30, 373, 377, 769, 849
BstMCI	CGRYCG	1 cut(s)	380
BstMWI	GCNNNNNNNGC	1 cut(s)	166
BstNI	CCWGG	4 cut(s)	185, 348, 605, 829
BstSCI	CCNGG	4 cut(s)	183, 346, 603, 827
BstSFI	CTRYAG	1 cut(s)	815
BstSLI	GKGCMC	1 cut(s)	512
BstUI	CGCG	1 cut(s)	382
BstX2I	RGATCY	1 cut(s)	30
BstYI	RGATCY	1 cut(s)	30
Bsu15I	ATCGAT	1 cut(s)	376
BsuRI	GGCC	2 cut(s)	603, 806
BsuTUI	ATCGAT	1 cut(s)	376
BtgI	CCRYGG	1 cut(s)	902
BtsCI	GGATG	4 cut(s)	193, 255, 721, 843
BtsIMutI	CAGTG	2 cut(s)	507, 565
BtuMI	TCGCGA	1 cut(s)	382
Cac8I	GCNNGC	1 cut(s)	286
CfoI	GCGC	1 cut(s)	639
Cfr10I	RCCGGY	1 cut(s)	53
ClaI	ATCGAT	1 cut(s)	376
Csp6I	GTAC	1 cut(s)	776
CspAI	ACCGGT	1 cut(s)	53
CviAII	CATG	7 cut(s)	194, 229, 587, 610, 641, 773, 903
CviQI	GTAC	1 cut(s)	776
DdeI	CTNAG	3 cut(s)	173, 216, 446
DpnI	GATC	5 cut(s)	32, 375, 379, 771, 851
DpnII	GATC	5 cut(s)	30, 373, 377, 769, 849
DraI	TTTAAA	1 cut(s)	124
Eam1104I	CTCTTC	2 cut(s)	519, 815
EarI	CTCTTC	2 cut(s)	519, 815
Eco130I	CCWWGG	2 cut(s)	204, 902
Eco31I	GGTCTC	2 cut(s)	194, 648
Eco88I	CYCGRG	1 cut(s)	36
EcoNI	CCTNNNNNAGG	1 cut(s)	14
EcoRI	GAATTC	1 cut(s)	91
EcoRII	CCWGG	4 cut(s)	183, 346, 603, 827
EcoT14I	CCWWGG	2 cut(s)	204, 902
ErhI	CCWWGG	2 cut(s)	204, 902
FaeI	CATG	7 cut(s)	197, 232, 590, 613, 644, 776, 906
FaiI	YATR	9 cut(s)	195, 230, 293, 588, 611, 642, 701, 774, 904
FatI	CATG	7 cut(s)	193, 228, 586, 609, 640, 772, 902
FbaI	TGATCA	1 cut(s)	769
FokI	GGATG	4 cut(s)	200, 262, 728, 850
FspBI	CTAG	2 cut(s)	71, 161
GlaI	GCGC	1 cut(s)	638
GsuI	CTGGAG	3 cut(s)	117, 167, 573
HaeII	RGCGCY	1 cut(s)	640
HaeIII	GGCC	2 cut(s)	603, 806
HapII	CCGG	1 cut(s)	54
HhaI	GCGC	1 cut(s)	639
Hin1II	CATG	7 cut(s)	197, 232, 590, 613, 644, 776, 906
Hin6I	GCGC	1 cut(s)	637
HinP1I	GCGC	1 cut(s)	637
HincII	GTYRAC	1 cut(s)	44
HindII	GTYRAC	1 cut(s)	44
HindIII	AAGCTT	2 cut(s)	167, 668
HinfI	GANTC	2 cut(s)	20, 442
HpaII	CCGG	1 cut(s)	54
Hpy166II	GTNNAC	2 cut(s)	44, 563
Hpy188I	TCNGA	2 cut(s)	174, 441
Hpy188III	TCNNGA	9 cut(s)	96, 134, 381, 464, 473, 484, 632, 674, 695
Hpy8I	GTNNAC	2 cut(s)	44, 563
HpyAV	CCTTC	1 cut(s)	234
HpyCH4III	ACNGT	3 cut(s)	502, 560, 920
HpyCH4V	TGCA	5 cut(s)	191, 719, 764, 799, 843
HpyF10VI	GCNNNNNNNGC	1 cut(s)	166
HpyF3I	CTNAG	3 cut(s)	173, 216, 446
Hsp92II	CATG	7 cut(s)	197, 232, 590, 613, 644, 776, 906
HspAI	GCGC	1 cut(s)	637
Ksp22I	TGATCA	1 cut(s)	769
Kzo9I	GATC	5 cut(s)	30, 373, 377, 769, 849
LmnI	GCTCC	2 cut(s)	186, 226
LweI	GCATC	3 cut(s)	178, 634, 706
MaeI	CTAG	2 cut(s)	71, 161
MaeIII	GTNAC	2 cut(s)	211, 502
MalI	GATC	5 cut(s)	32, 375, 379, 771, 851
MboI	GATC	5 cut(s)	30, 373, 377, 769, 849
MboII	GAAGA	5 cut(s)	320, 536, 676, 832, 851
MfeI	CAATTG	1 cut(s)	531
MflI	RGATCY	1 cut(s)	30
MhlI	GDGCHC	1 cut(s)	512
MlyI	GAGTC	1 cut(s)	436
MmeI	TCCRAC	1 cut(s)	253
MnlI	CCTC	9 cut(s)	20, 23, 45, 57, 190, 469, 480, 593, 863
MroXI	GAANNNNTTC	1 cut(s)	456
MseI	TTAA	5 cut(s)	123, 240, 416, 542, 925
MspI	CCGG	1 cut(s)	54
MspR9I	CCNGG	4 cut(s)	185, 348, 605, 829
MunI	CAATTG	1 cut(s)	531
MvaI	CCWGG	4 cut(s)	185, 348, 605, 829
MvnI	CGCG	1 cut(s)	382
MwoI	GCNNNNNNNGC	1 cut(s)	166
NcoI	CCATGG	1 cut(s)	902
NdeII	GATC	5 cut(s)	30, 373, 377, 769, 849
NlaIII	CATG	7 cut(s)	197, 232, 590, 613, 644, 776, 906
NlaIV	GGNNCC	1 cut(s)	222
NmuCI	GTSAC	2 cut(s)	211, 502
NruI	TCGCGA	1 cut(s)	382
PdmI	GAANNNNTTC	1 cut(s)	456
PfeI	GAWTC	1 cut(s)	20
PflMI	CCANNNNNTGG	2 cut(s)	610, 834
PfoI	TCCNGGA	2 cut(s)	183, 827
PinAI	ACCGGT	1 cut(s)	53
Ple19I	CGATCG	1 cut(s)	380
PleI	GAGTC	1 cut(s)	436
PpsI	GAGTC	1 cut(s)	436
PshBI	ATTAAT	1 cut(s)	542
PsiI	TTATAA	1 cut(s)	293
Psp6I	CCWGG	4 cut(s)	183, 346, 603, 827
PspGI	CCWGG	4 cut(s)	183, 346, 603, 827
PspN4I	GGNNCC	1 cut(s)	222
PsuI	RGATCY	1 cut(s)	30
PvuI	CGATCG	1 cut(s)	380
RruI	TCGCGA	1 cut(s)	382
RsaI	GTAC	1 cut(s)	777
RsaNI	GTAC	1 cut(s)	776
SaqAI	TTAA	5 cut(s)	123, 240, 416, 542, 925
Sau3AI	GATC	5 cut(s)	30, 373, 377, 769, 849
SchI	GAGTC	1 cut(s)	436
ScrFI	CCNGG	4 cut(s)	185, 348, 605, 829
SduI	GDGCHC	1 cut(s)	512
SfaNI	GCATC	3 cut(s)	178, 634, 706
SfcI	CTRYAG	1 cut(s)	815
SmlI	CTYRAG	2 cut(s)	14, 659
SmoI	CTYRAG	2 cut(s)	14, 659
SsiI	CCGC	2 cut(s)	247, 704
SspMI	CTAG	2 cut(s)	71, 161
StyD4I	CCNGG	4 cut(s)	183, 346, 603, 827
StyI	CCWWGG	2 cut(s)	204, 902
TaaI	ACNGT	3 cut(s)	502, 560, 920
TaqI	TCGA	3 cut(s)	376, 483, 598
TatI	WGTACW	1 cut(s)	775
TfiI	GAWTC	1 cut(s)	20
Tru1I	TTAA	5 cut(s)	123, 240, 416, 542, 925
Tru9I	TTAA	5 cut(s)	123, 240, 416, 542, 925
TscAI	CASTG	2 cut(s)	507, 565
TseFI	GTSAC	2 cut(s)	211, 502
Tsp45I	GTSAC	2 cut(s)	211, 502
TspDTI	ATGAA	7 cut(s)	17, 104, 245, 282, 449, 537, 603
TspRI	CASTG	2 cut(s)	507, 565
Van91I	CCANNNNNTGG	2 cut(s)	610, 834
VspI	ATTAAT	1 cut(s)	542
XagI	CCTNNNNNAGG	1 cut(s)	14
XapI	RAATTY	6 cut(s)	91, 115, 325, 434, 567, 627
XmnI	GAANNNNTTC	1 cut(s)	456
XspI	CTAG	2 cut(s)	71, 161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.