Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0006075

Physical Location & Seq

Genomic Coordinates Forward (+)

456732 .. 461024

Gene Structure 4293 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g00480.9

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGAACGACCTGCTAAAGGATTCTTTTGAGATCTCTCGGGGTCAAGCTTTGAGAGATGGAGATATCGAACTAGGAGCACATGCTTCAATGAATTCTGGAGAACTTGGTTTGGAGAATTTTTTCAAAAAGGTTCAAGAGATCGAGAAGCAAAATGAGAAGCTTGATAAACTTTTGAAAAAGCTCCAGGATGCACATGAAGAGTCCAAGGCTGTTACTAAGGCTCCTTCAATGAAATCAATCAAGCAACGAATGGAGAAAGATGTTGACGAAGTTGGAAAAGTTGCTCGATGGATAAAGTCAAAAATTGAAGAACTCGACAAAGAGAATTTAGCAAATAGACAGAAGGCTGGTTGCGGAAAAGGAACAGGTGTAGATCGATCCCGAACAGCAACAACCCTTGCCTTGAAAAAGAAATTAAAGGACAAGATGGCTGAATTTCAGACAATTGAAAGATTAATCGAGACAGGAGACAGTGAACAAATTTTCCAGAAGGCAATCCAAGAACAAGGGCGAGGCCAGATAATGGACACTCTGGCCGAAATTCAAGAGCGACATGATGCTGTTAGAGATCTTGAGAGGAAGCTTCTCGATTTACAACAGATCTTTCTGGATATGGCGGTGCTGGTCGATGCACAAGGGGACTTGCTTAACAACATAGAAACCCAGGTATCGAGTGCGGTAGATCATGTACAGCAAGGGAACAATGCTCTTCAGAAGGCCAAGAAGCTACAAAAGAGTTCGAGGAAATGGATGTGCATTGCGATCCTCATCCTTCTTATCATCGTTGCAATCATCGCGGTGGCTGTGTTAAAACCGTGGAGTAGTAACAATGGTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031201 GO:0031224 GO:0032940 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0061024 GO:0061025 GO:0071840 GO:0071944 GO:0090174 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 ko04721 map04130 map04721

Pfam Domains

Protein Families

SNARE Syntaxin

Protein Analysis

280

Amino Acids

31.29

Weight (kDa)

8.35

Isoelectric Point (pI)

39.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006075)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03800 AT3G03800 AT5G08080 AT5G08080 AT5G08080 AT5G08080 AT5G08080
fragaria_vesca	FvH4_1g28350 FvH4_1g28350 FvH4_1g28350
malus_domestica	MD12G1006500.v1.1 MD14G1004100.v1.1
prunus_persica	Prupe.7G006600_v2.0.a1
pyrus_communis	pycom12g00480 pycom14g00190
rosa_chinensis	RchiOBHm_Chr3g0496741
rosa_laevigata	RLG00000022509
rosa_multiflora	Rmu_sc0000542.1_g000019
rosa_roxburghii	Rroxscaffold_6G00388750
rosa_rugosa	Rorug03G0286300 Rorug03G0286300 Rorug03G0286300 Rorug03G0286300
rosa_samantha	Rh3AG330900 Rh3BG366900 Rh3DG366700
rosa_wichuraiana	Rw3G028970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	18
AccB7I	CCANNNNNTGG	1 cut(s)	523
AccII	CGCG	1 cut(s)	797
AciI	CCGC	4 cut(s)	354, 617, 677, 797
AclWI	GGATC	2 cut(s)	372, 757
AcoI	YGGCCR	1 cut(s)	534
AcsI	RAATTY	6 cut(s)	91, 115, 325, 434, 480, 540
AcuI	CTGAAG	1 cut(s)	695
AfaI	GTAC	1 cut(s)	690
AfiI	CCNNNNNNNGG	2 cut(s)	16, 523
AgsI	TTSAA	9 cut(s)	87, 124, 134, 175, 228, 308, 406, 449, 545
AjnI	CCWGG	2 cut(s)	183, 663
AloI	GAACNNNNNNTCC	2 cut(s)	468, 500
AluBI	AGCT	5 cut(s)	47, 160, 181, 583, 727
AluI	AGCT	5 cut(s)	47, 160, 181, 583, 727
Alw21I	GWGCWC	1 cut(s)	79
Alw26I	GTCTC	2 cut(s)	455, 462
AlwI	GGATC	2 cut(s)	372, 757
Ama87I	CYCGRG	1 cut(s)	36
AoxI	GGCC	3 cut(s)	514, 534, 717
ApoI	RAATTY	6 cut(s)	91, 115, 325, 434, 480, 540
AseI	ATTAAT	1 cut(s)	455
Asp700I	GAANNNNTTC	1 cut(s)	119
AvaI	CYCGRG	1 cut(s)	36
BaeI	ACNNNNGTAYC	2 cut(s)	651, 684
Bbv12I	GWGCWC	1 cut(s)	79
BccI	CCATC	3 cut(s)	50, 282, 421
BciT130I	CCWGG	2 cut(s)	185, 665
BcoDI	GTCTC	2 cut(s)	455, 462
BfaI	CTAG	1 cut(s)	71
BfuAI	ACCTGC	1 cut(s)	18
BglII	AGATCT	3 cut(s)	30, 568, 600
Bme1390I	CCNGG	2 cut(s)	185, 665
BmeT110I	CYCGRG	1 cut(s)	36
BmiI	GGNNCC	1 cut(s)	222
BmrFI	CCNGG	2 cut(s)	185, 665
BmsI	GCATC	3 cut(s)	178, 547, 619
BpmI	CTGGAG	2 cut(s)	117, 167
BpuEI	CTTGAG	1 cut(s)	593
Bsa29I	ATCGAT	1 cut(s)	376
BsaBI	GATNNNNATC	1 cut(s)	767
BsaJI	CCNNGG	3 cut(s)	204, 663, 815
BsaXI	ACNNNNNCTCC	2 cut(s)	205, 235
Bsc4I	CCNNNNNNNGG	2 cut(s)	16, 523
Bse3DI	GCAATG	1 cut(s)	756
Bse8I	GATNNNNATC	1 cut(s)	767
BseBI	CCWGG	2 cut(s)	185, 665
BseCI	ATCGAT	1 cut(s)	376
BseDI	CCNNGG	3 cut(s)	204, 663, 815
BseGI	GGATG	3 cut(s)	193, 756, 768
BseJI	GATNNNNATC	1 cut(s)	767
BseLI	CCNNNNNNNGG	2 cut(s)	16, 523
BseMI	GCAATG	1 cut(s)	756
Bsh1236I	CGCG	1 cut(s)	797
BshFI	GGCC	3 cut(s)	516, 536, 719
BshVI	ATCGAT	1 cut(s)	376
BsiHKAI	GWGCWC	1 cut(s)	79
BsiHKCI	CYCGRG	1 cut(s)	36
BslFI	GGGAC	1 cut(s)	653
BslI	CCNNNNNNNGG	2 cut(s)	16, 523
BsmAI	GTCTC	2 cut(s)	455, 462
BsmFI	GGGAC	1 cut(s)	653
BsnI	GGCC	3 cut(s)	516, 536, 719
BsoBI	CYCGRG	1 cut(s)	36
Bsp1286I	GDGCHC	1 cut(s)	79
Bsp1407I	TGTACA	1 cut(s)	688
Bsp143I	GATC	8 cut(s)	30, 138, 373, 377, 568, 600, 682, 762
BspACI	CCGC	4 cut(s)	354, 617, 677, 797
BspANI	GGCC	3 cut(s)	516, 536, 719
BspDI	ATCGAT	1 cut(s)	376
BspFNI	CGCG	1 cut(s)	797
BspLI	GGNNCC	1 cut(s)	222
BspMI	ACCTGC	1 cut(s)	18
BspPI	GGATC	2 cut(s)	372, 757
BspQI	GCTCTTC	1 cut(s)	714
BsrDI	GCAATG	1 cut(s)	756
BsrGI	TGTACA	1 cut(s)	688
BssECI	CCNNGG	3 cut(s)	204, 663, 815
BssMI	GATC	8 cut(s)	30, 138, 373, 377, 568, 600, 682, 762
BssT1I	CCWWGG	1 cut(s)	204
Bst2UI	CCWGG	2 cut(s)	185, 665
Bst4CI	ACNGT	2 cut(s)	473, 816
Bst6I	CTCTTC	2 cut(s)	192, 714
BstAUI	TGTACA	1 cut(s)	688
BstDEI	CTNAG	1 cut(s)	216
BstDSI	CCRYGG	1 cut(s)	815
BstENI	CCTNNNNNAGG	1 cut(s)	14
BstF5I	GGATG	3 cut(s)	193, 756, 768
BstFNI	CGCG	1 cut(s)	797
BstKTI	GATC	8 cut(s)	33, 141, 376, 380, 571, 603, 685, 765
BstMAI	GTCTC	2 cut(s)	455, 462
BstMBI	GATC	8 cut(s)	30, 138, 373, 377, 568, 600, 682, 762
BstMWI	GCNNNNNNNGC	1 cut(s)	794
BstNI	CCWGG	2 cut(s)	185, 665
BstNSI	RCATGY	1 cut(s)	83
BstSCI	CCNGG	2 cut(s)	183, 663
BstUI	CGCG	1 cut(s)	797
BstX2I	RGATCY	3 cut(s)	30, 568, 600
BstYI	RGATCY	3 cut(s)	30, 568, 600
Bsu15I	ATCGAT	1 cut(s)	376
BsuRI	GGCC	3 cut(s)	516, 536, 719
BsuTUI	ATCGAT	1 cut(s)	376
BtgI	CCRYGG	1 cut(s)	815
BtgZI	GCGATG	1 cut(s)	778
BtsCI	GGATG	3 cut(s)	193, 756, 768
BtsIMutI	CAGTG	1 cut(s)	478
BveI	ACCTGC	1 cut(s)	18
ClaI	ATCGAT	1 cut(s)	376
Csp6I	GTAC	1 cut(s)	689
CviAII	CATG	4 cut(s)	80, 194, 554, 686
CviQI	GTAC	1 cut(s)	689
DdeI	CTNAG	1 cut(s)	216
DpnI	GATC	8 cut(s)	32, 140, 375, 379, 570, 602, 684, 764
DpnII	GATC	8 cut(s)	30, 138, 373, 377, 568, 600, 682, 762
EaeI	YGGCCR	1 cut(s)	534
Eam1104I	CTCTTC	2 cut(s)	192, 714
EarI	CTCTTC	2 cut(s)	192, 714
Eco130I	CCWWGG	1 cut(s)	204
Eco32I	GATATC	1 cut(s)	64
Eco57I	CTGAAG	1 cut(s)	695
Eco88I	CYCGRG	1 cut(s)	36
EcoNI	CCTNNNNNAGG	1 cut(s)	14
EcoRI	GAATTC	1 cut(s)	91
EcoRII	CCWGG	2 cut(s)	183, 663
EcoRV	GATATC	1 cut(s)	64
EcoT14I	CCWWGG	1 cut(s)	204
ErhI	CCWWGG	1 cut(s)	204
FaeI	CATG	4 cut(s)	83, 197, 557, 689
FaiI	YATR	6 cut(s)	81, 195, 555, 614, 656, 687
FaqI	GGGAC	1 cut(s)	653
FatI	CATG	4 cut(s)	79, 193, 553, 685
FokI	GGATG	3 cut(s)	200, 755, 763
FspBI	CTAG	1 cut(s)	71
GsuI	CTGGAG	2 cut(s)	117, 167
HaeIII	GGCC	3 cut(s)	516, 536, 719
Hin1II	CATG	4 cut(s)	83, 197, 557, 689
HincII	GTYRAC	1 cut(s)	265
HindII	GTYRAC	1 cut(s)	265
HindIII	AAGCTT	3 cut(s)	45, 158, 581
HinfI	GANTC	2 cut(s)	20, 200
Hpy166II	GTNNAC	2 cut(s)	265, 476
Hpy188I	TCNGA	2 cut(s)	441, 714
Hpy8I	GTNNAC	2 cut(s)	265, 476
HpyAV	CCTTC	5 cut(s)	234, 337, 484, 709, 782
HpyCH4III	ACNGT	2 cut(s)	473, 816
HpyCH4V	TGCA	4 cut(s)	191, 632, 756, 788
HpyF10VI	GCNNNNNNNGC	1 cut(s)	794
HpyF3I	CTNAG	1 cut(s)	216
Hsp92II	CATG	4 cut(s)	83, 197, 557, 689
Kzo9I	GATC	8 cut(s)	30, 138, 373, 377, 568, 600, 682, 762
LguI	GCTCTTC	1 cut(s)	714
LmnI	GCTCC	3 cut(s)	74, 186, 226
LweI	GCATC	3 cut(s)	178, 547, 619
MaeI	CTAG	1 cut(s)	71
MaeIII	GTNAC	2 cut(s)	211, 824
MalI	GATC	8 cut(s)	32, 140, 375, 379, 570, 602, 684, 764
MboI	GATC	8 cut(s)	30, 138, 373, 377, 568, 600, 682, 762
MboII	GAAGA	3 cut(s)	209, 320, 701
MfeI	CAATTG	1 cut(s)	444
MflI	RGATCY	3 cut(s)	30, 568, 600
MhlI	GDGCHC	1 cut(s)	79
MluCI	AATT	9 cut(s)	91, 115, 303, 325, 413, 434, 444, 480, 540
MlyI	GAGTC	1 cut(s)	209
MmeI	TCCRAC	1 cut(s)	253
MnlI	CCTC	4 cut(s)	506, 570, 735, 776
MroXI	GAANNNNTTC	1 cut(s)	119
MseI	TTAA	5 cut(s)	416, 455, 648, 809, 838
MslI	CAYNNNNRTG	1 cut(s)	797
MspR9I	CCNGG	2 cut(s)	185, 665
MunI	CAATTG	1 cut(s)	444
MvaI	CCWGG	2 cut(s)	185, 665
MvnI	CGCG	1 cut(s)	797
MwoI	GCNNNNNNNGC	1 cut(s)	794
NdeII	GATC	8 cut(s)	30, 138, 373, 377, 568, 600, 682, 762
NlaIII	CATG	4 cut(s)	83, 197, 557, 689
NlaIV	GGNNCC	1 cut(s)	222
NspI	RCATGY	1 cut(s)	83
PciSI	GCTCTTC	1 cut(s)	714
PdmI	GAANNNNTTC	1 cut(s)	119
PfeI	GAWTC	1 cut(s)	20
PflMI	CCANNNNNTGG	1 cut(s)	523
PfoI	TCCNGGA	1 cut(s)	183
PleI	GAGTC	1 cut(s)	208
PpsI	GAGTC	1 cut(s)	208
PshBI	ATTAAT	1 cut(s)	455
Psp6I	CCWGG	2 cut(s)	183, 663
PspGI	CCWGG	2 cut(s)	183, 663
PspN4I	GGNNCC	1 cut(s)	222
PsuI	RGATCY	3 cut(s)	30, 568, 600
RsaI	GTAC	1 cut(s)	690
RsaNI	GTAC	1 cut(s)	689
RseI	CAYNNNNRTG	1 cut(s)	797
SapI	GCTCTTC	1 cut(s)	714
SaqAI	TTAA	5 cut(s)	416, 455, 648, 809, 838
Sau3AI	GATC	8 cut(s)	30, 138, 373, 377, 568, 600, 682, 762
SchI	GAGTC	1 cut(s)	209
ScrFI	CCNGG	2 cut(s)	185, 665
SduI	GDGCHC	1 cut(s)	79
SetI	ASST	9 cut(s)	12, 49, 132, 162, 183, 370, 585, 669, 729
SfaNI	GCATC	3 cut(s)	178, 547, 619
SmiMI	CAYNNNNRTG	1 cut(s)	797
SmlI	CTYRAG	1 cut(s)	572
SmoI	CTYRAG	1 cut(s)	572
Sse9I	AATT	9 cut(s)	91, 115, 303, 325, 413, 434, 444, 480, 540
SsiI	CCGC	4 cut(s)	354, 617, 677, 797
SspMI	CTAG	1 cut(s)	71
StyD4I	CCNGG	2 cut(s)	183, 663
StyI	CCWWGG	1 cut(s)	204
TaaI	ACNGT	2 cut(s)	473, 816
TasI	AATT	9 cut(s)	91, 115, 303, 325, 413, 434, 444, 480, 540
TatI	WGTACW	1 cut(s)	688
TfiI	GAWTC	1 cut(s)	20
Tru1I	TTAA	5 cut(s)	416, 455, 648, 809, 838
Tru9I	TTAA	5 cut(s)	416, 455, 648, 809, 838
TscAI	CASTG	1 cut(s)	478
TspDTI	ATGAA	4 cut(s)	17, 104, 210, 245
TspRI	CASTG	1 cut(s)	478
Van91I	CCANNNNNTGG	1 cut(s)	523
VspI	ATTAAT	1 cut(s)	455
XagI	CCTNNNNNAGG	1 cut(s)	14
XapI	RAATTY	6 cut(s)	91, 115, 325, 434, 480, 540
XceI	RCATGY	1 cut(s)	83
XmnI	GAANNNNTTC	1 cut(s)	119
XspI	CTAG	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.