Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006075

Physical Location & Seq

Genomic Coordinates Forward (+)

2588160 .. 2591406

Gene Structure 3247 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G08080.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGAACGATCTTCTGAAGGGTTCGTTTGAGCTTCCCAGAGGTCAATCTTCTAGAGAAGGAGATGTTGAACTAGGGGAACAACAAGGTGGAGATCAAGGATTGGAAGATTTTTTCAAAAAGGTTCAAGTGATTGACAAACAGTATGATAAGCTAGACAAGCTTCTAAAGAAACTGCAGGCTTCCCATGAGGAGTCAAAATCTGTGACCAAAGCTCCTGCCATGAAGGCGATAAAGAAGACAATGGAAAAAGACGTTGATGAAGTTGGAAGTATTGCCCGTTTCATAAAGGGGAAACTCGAGGAGTTGGACAGAGAGAACTTGGCAAATAGACAAAAACCTGGATGTGCAAAAGGATCTGGTGTGGATCGATCAAGAACAGCAACAACACTTTCCTTAAAGAAGAAGTTGAAAGACAAGATGGCCGAGTTTCAGGTTCTACGAGAGAACATTCAACAAGAGTATCGCGATGTTGTTGATAGGCGAGTTTATACAGTAACTGGGGAGCGGGCGGATGAAGATACTATTGATGAATTGATTGAAACTGGAAACAGCGAACAGATCTTCCAGAAAGCGATTCAGGAGCAAGGAAGAGGACAGGTAATGGACACCTTGGCGGAAATCCAAGAACGTCATGATGCTGTCAGAGACTTGGAAAAGAAACTTCTTGACTTACAACAAATATTCTTGGATATGGCAGTTTTGGTTGATGCACAAGGAGAAATGCTTGACAATATAGAATCTCAGGTGTCAAGTGCAGTAGATCACGTGCAATCGGGAAACACGGCACTTCAAAGAGCAAAGAGCTTGCAGAAGAACTCAAGAAAATGGATGTGTATTGCAATTATCATCCTCCTCATTGTGGTTGCAGTGATCGTTGTTGGTGTTCTCAAGCCTTGGAAAAACAAGAGTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031201 GO:0031224 GO:0032940 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0061024 GO:0061025 GO:0071840 GO:0090174 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 ko04721 map04130 map04721

Pfam Domains

Protein Families

SNARE Syntaxin

Protein Analysis

304

Amino Acids

34.22

Weight (kDa)

6.09

Isoelectric Point (pI)

32.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Syntaxin	PF00804	31 - 192	4.3e-52	Syntaxin
SNARE	PF05739	240 - 292	1.2e-17	SNARE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006075)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03800 AT3G03800 AT5G08080 AT5G08080 AT5G08080 AT5G08080 AT5G08080
fragaria_vesca	FvH4_1g28350 FvH4_1g28350 FvH4_1g28350
malus_domestica	MD12G1006500.v1.1 MD14G1004100.v1.1
prunus_persica	Prupe.7G006600_v2.0.a1
pyrus_communis	pycom12g00480 pycom14g00190
rosa_chinensis	RchiOBHm_Chr3g0496741
rosa_laevigata	RLG00000022509
rosa_multiflora	Rmu_sc0000542.1_g000019
rosa_roxburghii	Rroxscaffold_6G00388750
rosa_rugosa	Rorug03G0286300 Rorug03G0286300 Rorug03G0286300 Rorug03G0286300
rosa_samantha	Rh3AG330900 Rh3BG366900 Rh3DG366700
rosa_wichuraiana	Rw3G028970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	505
AccII	CGCG	1 cut(s)	465
AciI	CCGC	3 cut(s)	505, 509, 614
AclWI	GGATC	2 cut(s)	361, 372
AcoI	YGGCCR	1 cut(s)	420
AcuI	CTGAAG	1 cut(s)	35
AcvI	CACGTG	1 cut(s)	766
AfiI	CCNNNNNNNGG	1 cut(s)	859
AgsI	TTSAA	7 cut(s)	68, 115, 125, 409, 452, 539, 791
AjnI	CCWGG	1 cut(s)	337
AloI	GAACNNNNNNTCC	2 cut(s)	546, 578
AluBI	AGCT	5 cut(s)	31, 151, 160, 212, 804
AluI	AGCT	5 cut(s)	31, 151, 160, 212, 804
Alw26I	GTCTC	1 cut(s)	639
AlwI	GGATC	2 cut(s)	361, 372
AlwNI	CAGNNNCTG	1 cut(s)	497
Ama87I	CYCGRG	1 cut(s)	296
AoxI	GGCC	1 cut(s)	420
AvaI	CYCGRG	1 cut(s)	296
BaeI	ACNNNNGTAYC	2 cut(s)	443, 476
BbrPI	CACGTG	1 cut(s)	766
BbsI	GAAGAC	1 cut(s)	242
BccI	CCATC	1 cut(s)	412
BceAI	ACGGC	1 cut(s)	798
BciT130I	CCWGG	1 cut(s)	339
BcoDI	GTCTC	1 cut(s)	639
BfaI	CTAG	3 cut(s)	51, 71, 152
BfmI	CTRYAG	1 cut(s)	173
BglI	GCCNNNNNGGC	1 cut(s)	224
BglII	AGATCT	1 cut(s)	558
Bme1390I	CCNGG	1 cut(s)	339
BmeT110I	CYCGRG	1 cut(s)	296
BmrFI	CCNGG	1 cut(s)	339
BmrI	ACTGGG	1 cut(s)	507
BmsI	GCATC	2 cut(s)	625, 697
BmuI	ACTGGG	1 cut(s)	507
BpiI	GAAGAC	1 cut(s)	242
BpuEI	CTTGAG	2 cut(s)	802, 872
Bsa29I	ATCGAT	1 cut(s)	367
BsaAI	YACGTR	1 cut(s)	766
BsaJI	CCNNGG	2 cut(s)	609, 893
BsaXI	ACNNNNNCTCC	2 cut(s)	196, 226
Bsc4I	CCNNNNNNNGG	1 cut(s)	859
Bse1I	ACTGG	2 cut(s)	502, 547
BseBI	CCWGG	1 cut(s)	339
BseCI	ATCGAT	1 cut(s)	367
BseDI	CCNNGG	2 cut(s)	609, 893
BseGI	GGATG	4 cut(s)	347, 517, 834, 846
BseLI	CCNNNNNNNGG	1 cut(s)	859
BseMII	CTCAG	1 cut(s)	755
BseNI	ACTGG	2 cut(s)	502, 547
BseRI	GAGGAG	3 cut(s)	203, 314, 842
BsgI	GTGCAG	1 cut(s)	774
Bsh1236I	CGCG	1 cut(s)	465
BshFI	GGCC	1 cut(s)	422
BshVI	ATCGAT	1 cut(s)	367
BsiHKCI	CYCGRG	1 cut(s)	296
BslI	CCNNNNNNNGG	1 cut(s)	859
BsmAI	GTCTC	1 cut(s)	639
BsnI	GGCC	1 cut(s)	422
BsoBI	CYCGRG	1 cut(s)	296
Bsp143I	GATC	8 cut(s)	7, 91, 353, 364, 368, 558, 760, 870
Bsp68I	TCGCGA	1 cut(s)	465
BspACI	CCGC	3 cut(s)	505, 509, 614
BspANI	GGCC	1 cut(s)	422
BspCNI	CTCAG	1 cut(s)	754
BspDI	ATCGAT	1 cut(s)	367
BspFNI	CGCG	1 cut(s)	465
BspHI	TCATGA	1 cut(s)	631
BspMAI	CTGCAG	1 cut(s)	177
BspPI	GGATC	2 cut(s)	361, 372
BsrBI	CCGCTC	1 cut(s)	505
BsrI	ACTGG	2 cut(s)	502, 547
BssECI	CCNNGG	2 cut(s)	609, 893
BssMI	GATC	8 cut(s)	7, 91, 353, 364, 368, 558, 760, 870
BssT1I	CCWWGG	2 cut(s)	609, 893
Bst2UI	CCWGG	1 cut(s)	339
Bst4CI	ACNGT	2 cut(s)	141, 493
Bst6I	CTCTTC	1 cut(s)	583
BstBAI	YACGTR	1 cut(s)	766
BstC8I	GCNNGC	3 cut(s)	177, 507, 806
BstDEI	CTNAG	1 cut(s)	741
BstF5I	GGATG	4 cut(s)	347, 517, 834, 846
BstFNI	CGCG	1 cut(s)	465
BstKTI	GATC	8 cut(s)	10, 94, 356, 367, 371, 561, 763, 873
BstMAI	GTCTC	1 cut(s)	639
BstMBI	GATC	8 cut(s)	7, 91, 353, 364, 368, 558, 760, 870
BstMWI	GCNNNNNNNGC	2 cut(s)	157, 224
BstNI	CCWGG	1 cut(s)	339
BstSCI	CCNGG	1 cut(s)	337
BstSFI	CTRYAG	1 cut(s)	173
BstUI	CGCG	1 cut(s)	465
BstV2I	GAAGAC	1 cut(s)	242
BstX2I	RGATCY	2 cut(s)	353, 558
BstYI	RGATCY	2 cut(s)	353, 558
Bsu15I	ATCGAT	1 cut(s)	367
BsuRI	GGCC	1 cut(s)	422
BsuTUI	ATCGAT	1 cut(s)	367
BtgZI	GCGATG	1 cut(s)	480
BtsCI	GGATG	4 cut(s)	347, 517, 834, 846
BtsI	GCAGTG	1 cut(s)	873
BtsIMutI	CAGTG	1 cut(s)	873
BtuMI	TCGCGA	1 cut(s)	465
Cac8I	GCNNGC	3 cut(s)	177, 507, 806
CaiI	CAGNNNCTG	1 cut(s)	497
CciI	TCATGA	1 cut(s)	631
ClaI	ATCGAT	1 cut(s)	367
CviAII	CATG	3 cut(s)	185, 220, 632
CviJI	RGCY	8 cut(s)	31, 151, 160, 179, 212, 422, 804, 892
CviKI_1	RGCY	8 cut(s)	31, 151, 160, 179, 212, 422, 804, 892
DdeI	CTNAG	1 cut(s)	741
DpnI	GATC	8 cut(s)	9, 93, 355, 366, 370, 560, 762, 872
DpnII	GATC	8 cut(s)	7, 91, 353, 364, 368, 558, 760, 870
EaeI	YGGCCR	1 cut(s)	420
Eam1104I	CTCTTC	1 cut(s)	583
EarI	CTCTTC	1 cut(s)	583
EciI	GGCGGA	2 cut(s)	524, 629
Eco130I	CCWWGG	2 cut(s)	609, 893
Eco57I	CTGAAG	1 cut(s)	35
Eco72I	CACGTG	1 cut(s)	766
Eco88I	CYCGRG	1 cut(s)	296
EcoRII	CCWGG	1 cut(s)	337
EcoT14I	CCWWGG	2 cut(s)	609, 893
ErhI	CCWWGG	2 cut(s)	609, 893
FaeI	CATG	3 cut(s)	188, 223, 635
FaiI	YATR	8 cut(s)	144, 186, 221, 284, 489, 633, 692, 734
FatI	CATG	3 cut(s)	184, 219, 631
FauI	CCCGC	1 cut(s)	498
FokI	GGATG	4 cut(s)	354, 524, 833, 841
FspBI	CTAG	3 cut(s)	51, 71, 152
HaeIII	GGCC	1 cut(s)	422
Hin1II	CATG	3 cut(s)	188, 223, 635
HindIII	AAGCTT	1 cut(s)	158
HinfI	GANTC	3 cut(s)	191, 574, 737
Hpy188I	TCNGA	2 cut(s)	15, 644
Hpy188III	TCNNGA	9 cut(s)	51, 372, 464, 565, 578, 632, 665, 774, 819
HpyAV	CCTTC	3 cut(s)	10, 50, 217
HpyCH4III	ACNGT	2 cut(s)	141, 493
HpyCH4IV	ACGT	3 cut(s)	252, 628, 765
HpyCH4V	TGCA	8 cut(s)	175, 347, 710, 755, 769, 808, 839, 866
HpyF10VI	GCNNNNNNNGC	2 cut(s)	157, 224
HpyF3I	CTNAG	1 cut(s)	741
HpySE526I	ACGT	3 cut(s)	252, 628, 765
Hsp92II	CATG	3 cut(s)	188, 223, 635
Kzo9I	GATC	8 cut(s)	7, 91, 353, 364, 368, 558, 760, 870
LmnI	GCTCC	3 cut(s)	217, 502, 580
LweI	GCATC	2 cut(s)	625, 697
MaeI	CTAG	3 cut(s)	51, 71, 152
MaeII	ACGT	3 cut(s)	252, 628, 765
MaeIII	GTNAC	2 cut(s)	202, 493
MalI	GATC	8 cut(s)	9, 93, 355, 366, 370, 560, 762, 872
MbiI	CCGCTC	1 cut(s)	505
MboI	GATC	8 cut(s)	7, 91, 353, 364, 368, 558, 760, 870
MboII	GAAGA	8 cut(s)	39, 116, 247, 412, 527, 553, 600, 823
MflI	RGATCY	2 cut(s)	353, 558
MluCI	AATT	2 cut(s)	530, 840
MlyI	GAGTC	1 cut(s)	200
MmeI	TCCRAC	2 cut(s)	244, 285
MnlI	CCTC	6 cut(s)	32, 181, 292, 584, 860, 863
MseI	TTAA	1 cut(s)	395
MspR9I	CCNGG	1 cut(s)	339
MvaI	CCWGG	1 cut(s)	339
MvnI	CGCG	1 cut(s)	465
MwoI	GCNNNNNNNGC	2 cut(s)	157, 224
NdeII	GATC	8 cut(s)	7, 91, 353, 364, 368, 558, 760, 870
NlaIII	CATG	3 cut(s)	188, 223, 635
NmeAIII	GCCGAG	1 cut(s)	448
NmuCI	GTSAC	1 cut(s)	202
NruI	TCGCGA	1 cut(s)	465
PaeR7I	CTCGAG	1 cut(s)	296
PagI	TCATGA	1 cut(s)	631
PfeI	GAWTC	2 cut(s)	574, 737
PleI	GAGTC	1 cut(s)	199
PmaCI	CACGTG	1 cut(s)	766
PmlI	CACGTG	1 cut(s)	766
PpsI	GAGTC	1 cut(s)	199
Ppu21I	YACGTR	1 cut(s)	766
Psp6I	CCWGG	1 cut(s)	337
PspCI	CACGTG	1 cut(s)	766
PspGI	CCWGG	1 cut(s)	337
PspXI	VCTCGAGB	1 cut(s)	296
PstI	CTGCAG	1 cut(s)	177
PstNI	CAGNNNCTG	1 cut(s)	497
PsuI	RGATCY	2 cut(s)	353, 558
RruI	TCGCGA	1 cut(s)	465
SaqAI	TTAA	1 cut(s)	395
Sau3AI	GATC	8 cut(s)	7, 91, 353, 364, 368, 558, 760, 870
SchI	GAGTC	1 cut(s)	200
ScrFI	CCNGG	1 cut(s)	339
SfaNI	GCATC	2 cut(s)	625, 697
SfcI	CTRYAG	1 cut(s)	173
Sfr274I	CTCGAG	1 cut(s)	296
SlaI	CTCGAG	1 cut(s)	296
SmlI	CTYRAG	3 cut(s)	296, 817, 887
SmoI	CTYRAG	3 cut(s)	296, 817, 887
Sse9I	AATT	2 cut(s)	530, 840
SsiI	CCGC	3 cut(s)	505, 509, 614
SspI	AATATT	1 cut(s)	681
SspMI	CTAG	3 cut(s)	51, 71, 152
StyD4I	CCNGG	1 cut(s)	337
StyI	CCWWGG	2 cut(s)	609, 893
TaaI	ACNGT	2 cut(s)	141, 493
TaiI	ACGT	3 cut(s)	255, 631, 768
TaqI	TCGA	2 cut(s)	297, 367
TasI	AATT	2 cut(s)	530, 840
TfiI	GAWTC	2 cut(s)	574, 737
Tru1I	TTAA	1 cut(s)	395
Tru9I	TTAA	1 cut(s)	395
TscAI	CASTG	1 cut(s)	873
TseFI	GTSAC	1 cut(s)	202
Tsp45I	GTSAC	1 cut(s)	202
TspDTI	ATGAA	6 cut(s)	17, 236, 271, 273, 528, 543
TspRI	CASTG	1 cut(s)	873
XbaI	TCTAGA	1 cut(s)	50
XhoI	CTCGAG	1 cut(s)	296
XspI	CTAG	3 cut(s)	51, 71, 152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.