Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0006075

Physical Location & Seq

Genomic Coordinates Reverse (-)

46041793 .. 46047320

Gene Structure 5528 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG366700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGAATTCTGGAGAACTTGGTTTGGAAAATTTCTTTAAAAAGGTTCAAGAGATTGAGAAACAGAATGAGAAGCTAGATAAGCTTCTGAGAAAACTCCAGGATGCACATGAGGAGACCAAGGCTGTGACTAAGGCTCCTTCCATGAAATCCATTAAAAAGCGGATGGAGAAAGATGTAGATGAAGTTGGAAAAATTGCTCGCTTTATAAAGTCAAAAATTGAAGAACTTGACAGAGAGAATTTAGCAAATAGACAGAAACCTGGTTGTGGAAAAGGAACAGGTGTAGATCGATCGCGAACAGCAACAACTCTTGCTTTGAAAAAGAAATTAAAGGACAAGATGGCTGAATTTCAGACTCTAAGAGAAACCATTCATCAAGAGTATCGGGAGGTTGTTGAGAGGCGAGTTTTTACAGTGACGGGCACAAGAGCTGATGAAGAGACAATTGAGAGATTAATTGAGACTGGAGACAGTGAACAAATTTTCCAAAAGGCAATCCATGAACAAGGTCGAGGCCAGGTCATGGACACTCTGGCAGAAATTCAAGAGCGCCATGATGCTGTTAGAGACCTTGAGAAGAAGCTTCTTGATTTACAGCAGATATTTCTTGATATGGCGGTGTTGGTGGATGCACAAGGGGAATTGCTTGACAACATTGAAACCCAAGTATCAAGTGCAGTTGATCATGTACAGCAGGGGAATACTGCTCTGCACAAGGCCAAGAAGCTACAGAAGAGTTCCAGGAAATGGATGTGCATTGCGATCCTCATTCTTCTTATCATTGTTGTAATCATTGTGGTTGCCGTGTTGAAGCCATGGAGTAGCAACAACGGTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031201 GO:0031224 GO:0032940 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0061024 GO:0061025 GO:0071840 GO:0071944 GO:0090174 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 ko04721 map04130 map04721

Pfam Domains

Protein Families

SNARE Syntaxin

Protein Analysis

279

Amino Acids

31.75

Weight (kDa)

8.66

Isoelectric Point (pI)

35.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Syntaxin	PF00804	7 - 166	9.3e-53	Syntaxin
SNARE	PF05739	214 - 266	1.3e-19	SNARE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006075)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03800 AT3G03800 AT5G08080 AT5G08080 AT5G08080 AT5G08080 AT5G08080
fragaria_vesca	FvH4_1g28350 FvH4_1g28350 FvH4_1g28350
malus_domestica	MD12G1006500.v1.1 MD14G1004100.v1.1
prunus_persica	Prupe.7G006600_v2.0.a1
pyrus_communis	pycom12g00480 pycom14g00190
rosa_chinensis	RchiOBHm_Chr3g0496741
rosa_laevigata	RLG00000022509
rosa_multiflora	Rmu_sc0000542.1_g000019
rosa_roxburghii	Rroxscaffold_6G00388750
rosa_rugosa	Rorug03G0286300 Rorug03G0286300 Rorug03G0286300 Rorug03G0286300
rosa_samantha	Rh3AG330900 Rh3BG366900 Rh3DG366700
rosa_wichuraiana	Rw3G028970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	206
AccB7I	CCANNNNNTGG	2 cut(s)	523, 747
AccII	CGCG	1 cut(s)	295
AciI	CCGC	2 cut(s)	160, 617
AclWI	GGATC	1 cut(s)	757
AcsI	RAATTY	6 cut(s)	4, 28, 238, 347, 480, 540
AfaI	GTAC	1 cut(s)	690
AfiI	CCNNNNNNNGG	3 cut(s)	266, 523, 747
AgsI	TTSAA	6 cut(s)	47, 221, 319, 545, 659, 811
AjnI	CCWGG	4 cut(s)	96, 259, 516, 740
AloI	GAACNNNNNNTCC	2 cut(s)	468, 500
AluBI	AGCT	5 cut(s)	73, 82, 431, 583, 727
AluI	AGCT	5 cut(s)	73, 82, 431, 583, 727
Alw26I	GTCTC	5 cut(s)	107, 434, 455, 462, 561
AlwI	GGATC	1 cut(s)	757
AoxI	GGCC	2 cut(s)	514, 717
ApoI	RAATTY	6 cut(s)	4, 28, 238, 347, 480, 540
AseI	ATTAAT	1 cut(s)	455
Asp700I	GAANNNNTTC	1 cut(s)	369
AspLEI	GCGC	1 cut(s)	552
BaeGI	GKGCMC	1 cut(s)	425
BaeI	ACNNNNGTAYC	2 cut(s)	651, 684
BccI	CCATC	2 cut(s)	157, 334
BceAI	ACGGC	1 cut(s)	788
BciT130I	CCWGG	4 cut(s)	98, 261, 518, 742
BclI	TGATCA	1 cut(s)	682
BcoDI	GTCTC	5 cut(s)	107, 434, 455, 462, 561
BfaI	CTAG	1 cut(s)	74
BfmI	CTRYAG	1 cut(s)	728
BfoI	RGCGCY	1 cut(s)	553
Bme1390I	CCNGG	4 cut(s)	98, 261, 518, 742
BmiI	GGNNCC	1 cut(s)	135
BmrFI	CCNGG	4 cut(s)	98, 261, 518, 742
BmsI	GCATC	3 cut(s)	91, 547, 619
BpmI	CTGGAG	3 cut(s)	30, 80, 486
BpuEI	CTTGAG	1 cut(s)	593
Bsa29I	ATCGAT	1 cut(s)	289
BsaI	GGTCTC	2 cut(s)	107, 561
BsaJI	CCNNGG	2 cut(s)	117, 815
BsaXI	ACNNNNNCTCC	2 cut(s)	118, 148
Bsc4I	CCNNNNNNNGG	3 cut(s)	266, 523, 747
Bse1I	ACTGG	1 cut(s)	469
Bse3DI	GCAATG	1 cut(s)	756
BseBI	CCWGG	4 cut(s)	98, 261, 518, 742
BseCI	ATCGAT	1 cut(s)	289
BseDI	CCNNGG	2 cut(s)	117, 815
BseGI	GGATG	4 cut(s)	106, 168, 634, 756
BseLI	CCNNNNNNNGG	3 cut(s)	266, 523, 747
BseMI	GCAATG	1 cut(s)	756
BseMII	CTCAG	1 cut(s)	77
BseNI	ACTGG	1 cut(s)	469
BseRI	GAGGAG	1 cut(s)	125
BseSI	GKGCMC	1 cut(s)	425
BsgI	GTGCAG	2 cut(s)	695, 696
Bsh1236I	CGCG	1 cut(s)	295
Bsh1285I	CGRYCG	1 cut(s)	293
BshFI	GGCC	2 cut(s)	516, 719
BshVI	ATCGAT	1 cut(s)	289
BsiEI	CGRYCG	1 cut(s)	293
BslI	CCNNNNNNNGG	3 cut(s)	266, 523, 747
BsmAI	GTCTC	5 cut(s)	107, 434, 455, 462, 561
BsnI	GGCC	2 cut(s)	516, 719
Bso31I	GGTCTC	2 cut(s)	107, 561
Bsp1286I	GDGCHC	1 cut(s)	425
Bsp1407I	TGTACA	1 cut(s)	688
Bsp143I	GATC	4 cut(s)	286, 290, 682, 762
Bsp19I	CCATGG	1 cut(s)	815
Bsp68I	TCGCGA	1 cut(s)	295
BspACI	CCGC	2 cut(s)	160, 617
BspANI	GGCC	2 cut(s)	516, 719
BspCNI	CTCAG	1 cut(s)	78
BspDI	ATCGAT	1 cut(s)	289
BspFNI	CGCG	1 cut(s)	295
BspLI	GGNNCC	1 cut(s)	135
BspPI	GGATC	1 cut(s)	757
BspTNI	GGTCTC	2 cut(s)	107, 561
BsrDI	GCAATG	1 cut(s)	756
BsrGI	TGTACA	1 cut(s)	688
BsrI	ACTGG	1 cut(s)	469
BssECI	CCNNGG	2 cut(s)	117, 815
BssMI	GATC	4 cut(s)	286, 290, 682, 762
BssT1I	CCWWGG	2 cut(s)	117, 815
Bst2UI	CCWGG	4 cut(s)	98, 261, 518, 742
Bst4CI	ACNGT	3 cut(s)	415, 473, 833
Bst6I	CTCTTC	2 cut(s)	432, 728
BstAUI	TGTACA	1 cut(s)	688
BstC8I	GCNNGC	1 cut(s)	199
BstDEI	CTNAG	3 cut(s)	86, 129, 359
BstDSI	CCRYGG	1 cut(s)	815
BstF5I	GGATG	4 cut(s)	106, 168, 634, 756
BstFNI	CGCG	1 cut(s)	295
BstH2I	RGCGCY	1 cut(s)	553
BstHHI	GCGC	1 cut(s)	552
BstKTI	GATC	4 cut(s)	289, 293, 685, 765
BstMAI	GTCTC	5 cut(s)	107, 434, 455, 462, 561
BstMBI	GATC	4 cut(s)	286, 290, 682, 762
BstMCI	CGRYCG	1 cut(s)	293
BstMWI	GCNNNNNNNGC	1 cut(s)	79
BstNI	CCWGG	4 cut(s)	98, 261, 518, 742
BstSCI	CCNGG	4 cut(s)	96, 259, 516, 740
BstSFI	CTRYAG	1 cut(s)	728
BstSLI	GKGCMC	1 cut(s)	425
BstUI	CGCG	1 cut(s)	295
Bsu15I	ATCGAT	1 cut(s)	289
BsuRI	GGCC	2 cut(s)	516, 719
BsuTUI	ATCGAT	1 cut(s)	289
BtgI	CCRYGG	1 cut(s)	815
BtsCI	GGATG	4 cut(s)	106, 168, 634, 756
BtsIMutI	CAGTG	2 cut(s)	420, 478
BtuMI	TCGCGA	1 cut(s)	295
Cac8I	GCNNGC	1 cut(s)	199
CfoI	GCGC	1 cut(s)	552
ClaI	ATCGAT	1 cut(s)	289
CsiI	ACCWGGT	1 cut(s)	259
Csp6I	GTAC	1 cut(s)	689
CviAII	CATG	7 cut(s)	107, 142, 500, 523, 554, 686, 816
CviQI	GTAC	1 cut(s)	689
DdeI	CTNAG	3 cut(s)	86, 129, 359
DpnI	GATC	4 cut(s)	288, 292, 684, 764
DpnII	GATC	4 cut(s)	286, 290, 682, 762
DraI	TTTAAA	1 cut(s)	37
Eam1104I	CTCTTC	2 cut(s)	432, 728
EarI	CTCTTC	2 cut(s)	432, 728
Eco130I	CCWWGG	2 cut(s)	117, 815
Eco31I	GGTCTC	2 cut(s)	107, 561
EcoRI	GAATTC	1 cut(s)	4
EcoRII	CCWGG	4 cut(s)	96, 259, 516, 740
EcoT14I	CCWWGG	2 cut(s)	117, 815
ErhI	CCWWGG	2 cut(s)	117, 815
FaeI	CATG	7 cut(s)	110, 145, 503, 526, 557, 689, 819
FaiI	YATR	9 cut(s)	108, 143, 206, 501, 524, 555, 614, 687, 817
FatI	CATG	7 cut(s)	106, 141, 499, 522, 553, 685, 815
FbaI	TGATCA	1 cut(s)	682
FokI	GGATG	4 cut(s)	113, 175, 641, 763
FspBI	CTAG	1 cut(s)	74
GlaI	GCGC	1 cut(s)	551
GsuI	CTGGAG	3 cut(s)	30, 80, 486
HaeII	RGCGCY	1 cut(s)	553
HaeIII	GGCC	2 cut(s)	516, 719
HhaI	GCGC	1 cut(s)	552
Hin1II	CATG	7 cut(s)	110, 145, 503, 526, 557, 689, 819
Hin6I	GCGC	1 cut(s)	550
HinP1I	GCGC	1 cut(s)	550
HindIII	AAGCTT	2 cut(s)	80, 581
HinfI	GANTC	1 cut(s)	355
Hpy166II	GTNNAC	1 cut(s)	476
Hpy188I	TCNGA	2 cut(s)	87, 354
Hpy188III	TCNNGA	8 cut(s)	9, 47, 294, 377, 386, 545, 587, 608
Hpy8I	GTNNAC	1 cut(s)	476
HpyAV	CCTTC	1 cut(s)	147
HpyCH4III	ACNGT	3 cut(s)	415, 473, 833
HpyCH4V	TGCA	5 cut(s)	104, 632, 677, 712, 756
HpyF10VI	GCNNNNNNNGC	1 cut(s)	79
HpyF3I	CTNAG	3 cut(s)	86, 129, 359
Hsp92II	CATG	7 cut(s)	110, 145, 503, 526, 557, 689, 819
HspAI	GCGC	1 cut(s)	550
Ksp22I	TGATCA	1 cut(s)	682
Kzo9I	GATC	4 cut(s)	286, 290, 682, 762
LmnI	GCTCC	1 cut(s)	139
LweI	GCATC	3 cut(s)	91, 547, 619
MabI	ACCWGGT	1 cut(s)	259
MaeI	CTAG	1 cut(s)	74
MaeIII	GTNAC	2 cut(s)	124, 415
MalI	GATC	4 cut(s)	288, 292, 684, 764
MboI	GATC	4 cut(s)	286, 290, 682, 762
MboII	GAAGA	5 cut(s)	233, 449, 589, 745, 764
MfeI	CAATTG	1 cut(s)	444
MhlI	GDGCHC	1 cut(s)	425
MlyI	GAGTC	1 cut(s)	349
MmeI	TCCRAC	1 cut(s)	166
MnlI	CCTC	5 cut(s)	103, 382, 393, 506, 776
MroXI	GAANNNNTTC	1 cut(s)	369
MseI	TTAA	5 cut(s)	36, 153, 329, 455, 838
MspR9I	CCNGG	4 cut(s)	98, 261, 518, 742
MunI	CAATTG	1 cut(s)	444
MvaI	CCWGG	4 cut(s)	98, 261, 518, 742
MvnI	CGCG	1 cut(s)	295
MwoI	GCNNNNNNNGC	1 cut(s)	79
NcoI	CCATGG	1 cut(s)	815
NdeII	GATC	4 cut(s)	286, 290, 682, 762
NlaIII	CATG	7 cut(s)	110, 145, 503, 526, 557, 689, 819
NlaIV	GGNNCC	1 cut(s)	135
NmuCI	GTSAC	2 cut(s)	124, 415
NruI	TCGCGA	1 cut(s)	295
PdmI	GAANNNNTTC	1 cut(s)	369
PflMI	CCANNNNNTGG	2 cut(s)	523, 747
PfoI	TCCNGGA	2 cut(s)	96, 740
Ple19I	CGATCG	1 cut(s)	293
PleI	GAGTC	1 cut(s)	349
PpsI	GAGTC	1 cut(s)	349
PshBI	ATTAAT	1 cut(s)	455
PsiI	TTATAA	1 cut(s)	206
Psp6I	CCWGG	4 cut(s)	96, 259, 516, 740
PspGI	CCWGG	4 cut(s)	96, 259, 516, 740
PspN4I	GGNNCC	1 cut(s)	135
PvuI	CGATCG	1 cut(s)	293
RruI	TCGCGA	1 cut(s)	295
RsaI	GTAC	1 cut(s)	690
RsaNI	GTAC	1 cut(s)	689
SaqAI	TTAA	5 cut(s)	36, 153, 329, 455, 838
Sau3AI	GATC	4 cut(s)	286, 290, 682, 762
SchI	GAGTC	1 cut(s)	349
ScrFI	CCNGG	4 cut(s)	98, 261, 518, 742
SduI	GDGCHC	1 cut(s)	425
SexAI	ACCWGGT	1 cut(s)	259
SfaNI	GCATC	3 cut(s)	91, 547, 619
SfcI	CTRYAG	1 cut(s)	728
SmlI	CTYRAG	1 cut(s)	572
SmoI	CTYRAG	1 cut(s)	572
SsiI	CCGC	2 cut(s)	160, 617
SspMI	CTAG	1 cut(s)	74
StyD4I	CCNGG	4 cut(s)	96, 259, 516, 740
StyI	CCWWGG	2 cut(s)	117, 815
TaaI	ACNGT	3 cut(s)	415, 473, 833
TaqI	TCGA	2 cut(s)	289, 511
TatI	WGTACW	1 cut(s)	688
Tru1I	TTAA	5 cut(s)	36, 153, 329, 455, 838
Tru9I	TTAA	5 cut(s)	36, 153, 329, 455, 838
TscAI	CASTG	2 cut(s)	420, 478
TseFI	GTSAC	2 cut(s)	124, 415
Tsp45I	GTSAC	2 cut(s)	124, 415
TspDTI	ATGAA	6 cut(s)	17, 158, 195, 362, 450, 516
TspRI	CASTG	2 cut(s)	420, 478
Van91I	CCANNNNNTGG	2 cut(s)	523, 747
VspI	ATTAAT	1 cut(s)	455
XapI	RAATTY	6 cut(s)	4, 28, 238, 347, 480, 540
XmnI	GAANNNNTTC	1 cut(s)	369
XspI	CTAG	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.