Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0006075

Physical Location & Seq

Genomic Coordinates Reverse (-)

28862550 .. 28866967

Gene Structure 4418 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0286300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGCAGCAGAGGAAACTGGTAAATGCTCTGAAGCCTATCCAATGAAAGGTGGAGATGGCCCCAGCAACTATGCCAAGAACTCCATCTACCAGAAAGGAGTAATTGATGCTGCCAAAGAACTTCTAAATAAGGCAATTGCAGAAAAGCTTGACATTGAAACATTTTCATCTGCCAACTCCTTTCACATTGCAGATTTGGGTTGCTCAGTTGGGCCCAATACATTTTTGGCGGTTGAAAATATACTTGAAGCTGTTCTATTCAAGTATCAAAGCCGAGGACTGAATTGTCAAATCCCTGAATTTCAAGTCTTCTTTAATGATCATACCTCAAATGACTTCAACATGCTCTTCAATTCCCTCCCTCAGAATAGGCAATACTATGCTGCGGGTTTGCCTGGTTCTTTCTATGGTCGAATACTCCCCGATGCTTCTATCCACTTTTTTCACTCTTCTATTTCCCTTCATTGGCTTTCTAGAGTACCAAAAGATGTAACAGACAGCAACTCCCTTGCTTGGAATAAAGGGCGAATACATTACTTAGACTCCACAGATGAAGTAGTGAGGGCTTACGAAGCGCAATATGCTGAGGACATGGAGTGCTTTCTGCATGCCAGGGCACAAGAGACAGTACATGGAGGACTGATGGTAATTACTACTCATGGCTACCCAGCTGATACACCACCTGCTCATTCTCGGGCAAATATCATTTATCAAATTTTAGGATCTTGCCTCATTGACATGACTAGGAAGGGAGTAGTCAGCGAGGAGAAAATAGATTCATTTAATGTGCCTATATACTATGTGTGTCCCCAAGAACTGGAAGCTGCTGTAGAACGAAATGGATGTTTTAGCATAGACATAATGGAACACTTACCTACTGTGATGGAACAAGATACTATTTCAAAAAATAGCAAACTCATTGCATCTCATACGAGAGCTGTCATGGAGGGACTCTTCAAGCAGCATTTCGGAGAAGAAATCTTAGATGAGCTCTTCGACTTGTTTCACAAGAAAGTTGAAGAGCAGCACTCCGCATTTGAGTCAGGGAAGGTAGTGGACATCCTTATTGTGCTTAAACGCAAGGCAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031201 GO:0031224 GO:0032940 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0061024 GO:0061025 GO:0071840 GO:0071944 GO:0090174 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 ko04721 map04130 map04721

Pfam Domains

Protein Families

SNARE Syntaxin

Protein Analysis

363

Amino Acids

40.69

Weight (kDa)

5.37

Isoelectric Point (pI)

43.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_7	PF03492	50 - 360	4.7e-108	SAM dependent carboxyl methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006075)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03800 AT3G03800 AT5G08080 AT5G08080 AT5G08080 AT5G08080 AT5G08080
fragaria_vesca	FvH4_1g28350 FvH4_1g28350 FvH4_1g28350
malus_domestica	MD12G1006500.v1.1 MD14G1004100.v1.1
prunus_persica	Prupe.7G006600_v2.0.a1
pyrus_communis	pycom12g00480 pycom14g00190
rosa_chinensis	RchiOBHm_Chr3g0496741
rosa_laevigata	RLG00000022509
rosa_multiflora	Rmu_sc0000542.1_g000019
rosa_roxburghii	Rroxscaffold_6G00388750
rosa_rugosa	Rorug03G0286300 Rorug03G0286300 Rorug03G0286300 Rorug03G0286300
rosa_samantha	Rh3AG330900 Rh3BG366900 Rh3DG366700
rosa_wichuraiana	Rw3G028970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	691
AasI	GACNNNNNNGTC	1 cut(s)	285
Acc36I	ACCTGC	1 cut(s)	691
AccB7I	CCANNNNNTGG	1 cut(s)	817
AciI	CCGC	3 cut(s)	230, 386, 1032
AclWI	GGATC	1 cut(s)	730
AcsI	RAATTY	2 cut(s)	299, 714
AcuI	CTGAAG	1 cut(s)	51
AfaI	GTAC	2 cut(s)	480, 630
AfiI	CCNNNNNNNGG	4 cut(s)	47, 465, 513, 817
AjnI	CCWGG	2 cut(s)	394, 611
AluBI	AGCT	6 cut(s)	148, 251, 671, 824, 938, 991
AluI	AGCT	6 cut(s)	148, 251, 671, 824, 938, 991
Alw21I	GWGCWC	1 cut(s)	993
Alw26I	GTCTC	1 cut(s)	617
AlwI	GGATC	1 cut(s)	730
Ama87I	CYCGRG	1 cut(s)	693
AoxI	GGCC	2 cut(s)	58, 212
ApaI	GGGCCC	1 cut(s)	216
ApeKI	GCWGC	6 cut(s)	5, 110, 383, 824, 961, 1024
ApoI	RAATTY	2 cut(s)	299, 714
Asp700I	GAANNNNTTC	1 cut(s)	252
AspLEI	GCGC	1 cut(s)	577
AspS9I	GGNCC	3 cut(s)	59, 212, 213
AvaI	CYCGRG	1 cut(s)	693
BaeGI	GKGCMC	2 cut(s)	216, 619
BanII	GRGCYC	2 cut(s)	216, 993
BbsI	GAAGAC	1 cut(s)	301
Bbv12I	GWGCWC	1 cut(s)	993
BbvCI	CCTCAGC	1 cut(s)	585
BbvI	GCAGC	6 cut(s)	17, 97, 370, 811, 973, 1036
BccI	CCATC	4 cut(s)	50, 92, 637, 877
BciT130I	CCWGG	2 cut(s)	396, 613
BclI	TGATCA	1 cut(s)	319
BcoDI	GTCTC	1 cut(s)	617
BfaI	CTAG	2 cut(s)	474, 744
BfmI	CTRYAG	1 cut(s)	828
BfuAI	ACCTGC	1 cut(s)	691
BisI	GCNGC	6 cut(s)	6, 111, 384, 825, 962, 1025
BlsI	GCNGC	6 cut(s)	7, 112, 385, 826, 963, 1026
Bme1390I	CCNGG	2 cut(s)	396, 613
BmeT110I	CYCGRG	1 cut(s)	693
BmgT120I	GGNCC	3 cut(s)	59, 212, 213
BmiI	GGNNCC	2 cut(s)	61, 214
BmrFI	CCNGG	2 cut(s)	396, 613
BmsI	GCATC	3 cut(s)	97, 415, 932
BpiI	GAAGAC	1 cut(s)	301
BplI	GAGNNNNNCTC	2 cut(s)	1013, 1045
Bpu10I	CCTNAGC	1 cut(s)	585
BsaJI	CCNNGG	2 cut(s)	274, 612
BsaXI	ACNNNNNCTCC	4 cut(s)	488, 518, 527, 557
Bsc4I	CCNNNNNNNGG	4 cut(s)	47, 465, 513, 817
Bse1I	ACTGG	2 cut(s)	22, 822
Bse3DI	GCAATG	2 cut(s)	186, 918
BseBI	CCWGG	2 cut(s)	396, 613
BseDI	CCNNGG	2 cut(s)	274, 612
BseGI	GGATG	2 cut(s)	848, 1059
BseLI	CCNNNNNNNGG	4 cut(s)	47, 465, 513, 817
BseMI	GCAATG	2 cut(s)	186, 918
BseMII	CTCAG	3 cut(s)	219, 377, 576
BseNI	ACTGG	2 cut(s)	22, 822
BseRI	GAGGAG	1 cut(s)	779
BseSI	GKGCMC	2 cut(s)	216, 619
BseXI	GCAGC	6 cut(s)	17, 97, 370, 811, 973, 1036
BseYI	CCCAGC	2 cut(s)	62, 667
BshFI	GGCC	2 cut(s)	60, 214
BsiHKAI	GWGCWC	1 cut(s)	993
BsiHKCI	CYCGRG	1 cut(s)	693
BslFI	GGGAC	2 cut(s)	792, 963
BslI	CCNNNNNNNGG	4 cut(s)	47, 465, 513, 817
BsmAI	GTCTC	1 cut(s)	617
BsmFI	GGGAC	2 cut(s)	792, 963
BsnI	GGCC	2 cut(s)	60, 214
BsoBI	CYCGRG	1 cut(s)	693
Bsp120I	GGGCCC	1 cut(s)	212
Bsp1286I	GDGCHC	3 cut(s)	216, 619, 993
Bsp143I	GATC	2 cut(s)	319, 722
BspACI	CCGC	3 cut(s)	230, 386, 1032
BspANI	GGCC	2 cut(s)	60, 214
BspCNI	CTCAG	3 cut(s)	218, 376, 577
BspLI	GGNNCC	2 cut(s)	61, 214
BspMI	ACCTGC	1 cut(s)	691
BspPI	GGATC	1 cut(s)	730
BspQI	GCTCTTC	3 cut(s)	353, 998, 1014
BsrDI	GCAATG	2 cut(s)	186, 918
BsrI	ACTGG	2 cut(s)	22, 822
BssECI	CCNNGG	2 cut(s)	274, 612
BssMI	GATC	2 cut(s)	319, 722
Bst2UI	CCWGG	2 cut(s)	396, 613
Bst4CI	ACNGT	2 cut(s)	628, 880
Bst6I	CTCTTC	5 cut(s)	353, 454, 959, 998, 1014
BstC8I	GCNNGC	1 cut(s)	609
BstDEI	CTNAG	5 cut(s)	205, 363, 538, 585, 982
BstF5I	GGATG	2 cut(s)	848, 1059
BstHHI	GCGC	1 cut(s)	577
BstKTI	GATC	2 cut(s)	322, 725
BstMAI	GTCTC	1 cut(s)	617
BstMBI	GATC	2 cut(s)	319, 722
BstMWI	GCNNNNNNNGC	2 cut(s)	572, 581
BstNI	CCWGG	2 cut(s)	396, 613
BstNSI	RCATGY	2 cut(s)	346, 611
BstSCI	CCNGG	2 cut(s)	394, 611
BstSFI	CTRYAG	1 cut(s)	828
BstSLI	GKGCMC	2 cut(s)	216, 619
BstV1I	GCAGC	6 cut(s)	17, 97, 370, 811, 973, 1036
BstV2I	GAAGAC	1 cut(s)	301
BstX2I	RGATCY	1 cut(s)	722
BstYI	RGATCY	1 cut(s)	722
BsuRI	GGCC	2 cut(s)	60, 214
BtsCI	GGATG	2 cut(s)	848, 1059
BveI	ACCTGC	1 cut(s)	691
Cac8I	GCNNGC	1 cut(s)	609
CfoI	GCGC	1 cut(s)	577
Cfr13I	GGNCC	3 cut(s)	59, 212, 213
Csp6I	GTAC	2 cut(s)	479, 629
CviAII	CATG	7 cut(s)	343, 592, 608, 632, 659, 739, 943
CviQI	GTAC	2 cut(s)	479, 629
DdeI	CTNAG	5 cut(s)	205, 363, 538, 585, 982
DpnI	GATC	2 cut(s)	321, 724
DpnII	GATC	2 cut(s)	319, 722
DrdI	GACNNNNNNGTC	1 cut(s)	285
DseDI	GACNNNNNNGTC	1 cut(s)	285
Eam1104I	CTCTTC	5 cut(s)	353, 454, 959, 998, 1014
EarI	CTCTTC	5 cut(s)	353, 454, 959, 998, 1014
Ecl136II	GAGCTC	1 cut(s)	991
Eco24I	GRGCYC	2 cut(s)	216, 993
Eco53kI	GAGCTC	1 cut(s)	991
Eco57I	CTGAAG	1 cut(s)	51
Eco88I	CYCGRG	1 cut(s)	693
EcoICRI	GAGCTC	1 cut(s)	991
EcoRII	CCWGG	2 cut(s)	394, 611
EcoT38I	GRGCYC	2 cut(s)	216, 993
FaeI	CATG	7 cut(s)	346, 595, 611, 635, 662, 742, 946
FaqI	GGGAC	2 cut(s)	792, 963
FatI	CATG	7 cut(s)	342, 591, 607, 631, 658, 738, 942
FauI	CCCGC	1 cut(s)	379
FbaI	TGATCA	1 cut(s)	319
Fnu4HI	GCNGC	6 cut(s)	6, 111, 384, 825, 962, 1025
FokI	GGATG	2 cut(s)	855, 1046
FriOI	GRGCYC	2 cut(s)	216, 993
Fsp4HI	GCNGC	6 cut(s)	6, 111, 384, 825, 962, 1025
FspBI	CTAG	2 cut(s)	474, 744
GlaI	GCGC	1 cut(s)	576
GluI	GCNGC	6 cut(s)	6, 111, 384, 825, 962, 1025
GsaI	CCCAGC	2 cut(s)	66, 671
HaeIII	GGCC	2 cut(s)	60, 214
HhaI	GCGC	1 cut(s)	577
Hin1II	CATG	7 cut(s)	346, 595, 611, 635, 662, 742, 946
Hin6I	GCGC	1 cut(s)	575
HinP1I	GCGC	1 cut(s)	575
HindIII	AAGCTT	1 cut(s)	146
HinfI	GANTC	4 cut(s)	542, 776, 951, 1040
Hpy166II	GTNNAC	1 cut(s)	1057
Hpy188I	TCNGA	3 cut(s)	31, 366, 971
Hpy188III	TCNNGA	1 cut(s)	474
Hpy8I	GTNNAC	1 cut(s)	1057
HpyAV	CCTTC	3 cut(s)	470, 742, 1042
HpyCH4III	ACNGT	2 cut(s)	628, 880
HpyCH4V	TGCA	4 cut(s)	140, 191, 607, 923
HpyF10VI	GCNNNNNNNGC	2 cut(s)	572, 581
HpyF3I	CTNAG	5 cut(s)	205, 363, 538, 585, 982
Hsp92II	CATG	7 cut(s)	346, 595, 611, 635, 662, 742, 946
HspAI	GCGC	1 cut(s)	575
Ksp22I	TGATCA	1 cut(s)	319
Kzo9I	GATC	2 cut(s)	319, 722
LguI	GCTCTTC	3 cut(s)	353, 998, 1014
Lsp1109I	GCAGC	6 cut(s)	17, 97, 370, 811, 973, 1036
LweI	GCATC	3 cut(s)	97, 415, 932
MaeI	CTAG	2 cut(s)	474, 744
MaeIII	GTNAC	1 cut(s)	490
MalI	GATC	2 cut(s)	321, 724
MboI	GATC	2 cut(s)	319, 722
MboII	GAAGA	7 cut(s)	301, 340, 441, 946, 985, 986, 1031
MfeI	CAATTG	1 cut(s)	135
MflI	RGATCY	1 cut(s)	722
MhlI	GDGCHC	3 cut(s)	216, 619, 993
MluCI	AATT	8 cut(s)	102, 135, 283, 299, 352, 648, 714, 1087
MlyI	GAGTC	3 cut(s)	536, 945, 1049
MroXI	GAANNNNTTC	1 cut(s)	252
MseI	TTAA	3 cut(s)	315, 783, 1074
MslI	CAYNNNNRTG	1 cut(s)	737
MspA1I	CMGCKG	1 cut(s)	671
MspR9I	CCNGG	2 cut(s)	396, 613
MunI	CAATTG	1 cut(s)	135
MvaI	CCWGG	2 cut(s)	396, 613
MwoI	GCNNNNNNNGC	2 cut(s)	572, 581
NdeII	GATC	2 cut(s)	319, 722
NlaIII	CATG	7 cut(s)	346, 595, 611, 635, 662, 742, 946
NlaIV	GGNNCC	2 cut(s)	61, 214
NmeAIII	GCCGAG	1 cut(s)	299
NspI	RCATGY	2 cut(s)	346, 611
PaeI	GCATGC	1 cut(s)	611
PaqCI	CACCTGC	1 cut(s)	691
PciSI	GCTCTTC	3 cut(s)	353, 998, 1014
PdmI	GAANNNNTTC	1 cut(s)	252
PfeI	GAWTC	1 cut(s)	776
PflMI	CCANNNNNTGG	1 cut(s)	817
PkrI	GCNGC	6 cut(s)	7, 112, 385, 826, 963, 1026
PleI	GAGTC	3 cut(s)	536, 945, 1048
PpsI	GAGTC	3 cut(s)	536, 945, 1048
Psp124BI	GAGCTC	1 cut(s)	993
Psp6I	CCWGG	2 cut(s)	394, 611
PspFI	CCCAGC	2 cut(s)	62, 667
PspGI	CCWGG	2 cut(s)	394, 611
PspN4I	GGNNCC	2 cut(s)	61, 214
PspOMI	GGGCCC	1 cut(s)	212
PspPI	GGNCC	3 cut(s)	59, 212, 213
PsrI	GAACNNNNNNTAC	2 cut(s)	71, 103
PsuI	RGATCY	1 cut(s)	722
PvuII	CAGCTG	1 cut(s)	671
RsaI	GTAC	2 cut(s)	480, 630
RsaNI	GTAC	2 cut(s)	479, 629
RseI	CAYNNNNRTG	1 cut(s)	737
SacI	GAGCTC	1 cut(s)	993
SapI	GCTCTTC	3 cut(s)	353, 998, 1014
SaqAI	TTAA	3 cut(s)	315, 783, 1074
SatI	GCNGC	6 cut(s)	6, 111, 384, 825, 962, 1025
Sau3AI	GATC	2 cut(s)	319, 722
Sau96I	GGNCC	3 cut(s)	59, 212, 213
SchI	GAGTC	3 cut(s)	536, 945, 1049
ScrFI	CCNGG	2 cut(s)	396, 613
SduI	GDGCHC	3 cut(s)	216, 619, 993
SfaNI	GCATC	3 cut(s)	97, 415, 932
SfcI	CTRYAG	1 cut(s)	828
SmiMI	CAYNNNNRTG	1 cut(s)	737
SphI	GCATGC	1 cut(s)	611
Sse9I	AATT	8 cut(s)	102, 135, 283, 299, 352, 648, 714, 1087
SsiI	CCGC	3 cut(s)	230, 386, 1032
SspMI	CTAG	2 cut(s)	474, 744
SstI	GAGCTC	1 cut(s)	993
StyD4I	CCNGG	2 cut(s)	394, 611
TaaI	ACNGT	2 cut(s)	628, 880
TaqI	TCGA	2 cut(s)	412, 996
TasI	AATT	8 cut(s)	102, 135, 283, 299, 352, 648, 714, 1087
TatI	WGTACW	1 cut(s)	628
TfiI	GAWTC	1 cut(s)	776
Tru1I	TTAA	3 cut(s)	315, 783, 1074
Tru9I	TTAA	3 cut(s)	315, 783, 1074
TseI	GCWGC	6 cut(s)	5, 110, 383, 824, 961, 1024
TspDTI	ATGAA	5 cut(s)	59, 156, 452, 567, 768
Van91I	CCANNNNNTGG	1 cut(s)	817
XapI	RAATTY	2 cut(s)	299, 714
XbaI	TCTAGA	1 cut(s)	473
XceI	RCATGY	2 cut(s)	346, 611
XcmI	CCANNNNNNNNNTGG	1 cut(s)	223
XmnI	GAANNNNTTC	1 cut(s)	252
XspI	CTAG	2 cut(s)	474, 744

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.