Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012719

Physical Location & Seq

Genomic Coordinates Reverse (-)

1215633 .. 1216958

Gene Structure 1326 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G04510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGATTTGATCTCTCAAAACCACAACAACAGAAACCCTAATACCAGTCTCTCGACGCAAACCCCTTCTTCCTTTTCTTCTCCACCTTCCTCTAGCCGCTACGAGAACCAGAAACGCCGTGACTGGAACACTTTCTGCCAATACCTCAGAAACCACCATCCACCGCTCTCTCTAGCTTCTTGCAGTGGCGCACACGTCCTCGATTTTCTGCGTTACCTTGACCAATTCGGCAAAACCAAAGTCCACCACCAAAACTGCGCCTTCTTTGGCCTCCCAAATCCACCGGCTCCTTGTCCTTGTCCTCTCCGACAAGCCTGGGGCTCACTCGACGCCCTCATTGGTCGTCTCCGTGCAGCCTACGAGGAGAACGGTGGCGCTCCCGAGACTAGCCCTTTTGGCTCACGGTCCGTCAGGATTTTCCTCAGGGAGGTTAGAGATTTCCAGGCTAAGTCACGTGGTGTTAGCTATGAGAAGAAGAGGAAAAGGGTCAACAACAAGCAAATAACTCAGTCCCAACCACAGTCCCAACCGCCTTTACCCCAGCAGCCACAGCAGGAGCAAGGTCAGTCTATGATGGCTAATTACCACCACGGTGCAACTCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009639 GO:0009653 GO:0009826 GO:0009987 GO:0010114 GO:0010218 GO:0010467 GO:0016043 GO:0016049 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0032502 GO:0032774 GO:0032989 GO:0034641 GO:0034645 GO:0034654 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048589 GO:0048856 GO:0048869 GO:0050896 GO:0060560 GO:0071704 GO:0071840 GO:0090304 GO:0090698 GO:0097659 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF640

Protein Analysis

201

Amino Acids

22.77

Weight (kDa)

9.82

Isoelectric Point (pI)

68.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ALOG_dom	PF04852	23 - 146	3.9e-66	ALOG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0012719)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04510 AT5G28490
fragaria_vesca	FvH4_6g01940
malus_domestica	MD04G1229700.v1.1
prunus_persica	Prupe.6G349800_v2.0.a1
pyrus_communis	pycom04g20350 pycom12g22620 pycom12g22670
rosa_chinensis	RchiOBHm_Chr3g0449731
rosa_laevigata	RLG00000025801
rosa_multiflora	Rmu_sc0000610.1_g000016
rosa_roxburghii	Rroxscaffold_6G00427600
rosa_rugosa	Rorug02G0622800
rosa_samantha	Rh3AG021200 Rh3BG021900 Rh3CG020500 Rh3DG021700
rosa_wichuraiana	Rw3G001750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	166
AciI	CCGC	3 cut(s)	97, 164, 530
AcvI	CACGTG	1 cut(s)	455
AcyI	GRCGYC	1 cut(s)	330
AdeI	CACNNNGTG	1 cut(s)	458
AfiI	CCNNNNNNNGG	1 cut(s)	427
AflIII	ACRYGT	1 cut(s)	193
AjiI	CACGTC	1 cut(s)	196
AjnI	CCWGG	2 cut(s)	314, 441
AleI	CACNNNNGTG	1 cut(s)	591
AluBI	AGCT	2 cut(s)	176, 465
AluI	AGCT	2 cut(s)	176, 465
Alw26I	GTCTC	3 cut(s)	53, 350, 377
Ama87I	CYCGRG	1 cut(s)	380
AoxI	GGCC	1 cut(s)	268
ApeKI	GCWGC	2 cut(s)	353, 544
ArsI	GACNNNNNNTTYG	2 cut(s)	225, 257
Asp700I	GAANNNNTTC	1 cut(s)	131
AspLEI	GCGC	3 cut(s)	191, 260, 377
AspS9I	GGNCC	1 cut(s)	405
AvaI	CYCGRG	1 cut(s)	380
AvaII	GGWCC	1 cut(s)	405
AxyI	CCTNAGG	1 cut(s)	422
BanII	GRGCYC	1 cut(s)	323
BbrPI	CACGTG	1 cut(s)	455
BbvI	GCAGC	2 cut(s)	365, 556
BccI	CCATC	2 cut(s)	165, 568
BceAI	ACGGC	1 cut(s)	102
BciT130I	CCWGG	2 cut(s)	316, 443
BcoDI	GTCTC	3 cut(s)	53, 350, 377
BfaI	CTAG	3 cut(s)	93, 173, 387
BfoI	RGCGCY	1 cut(s)	378
BglI	GCCNNNNNGGC	1 cut(s)	396
BisI	GCNGC	3 cut(s)	97, 354, 545
BlsI	GCNGC	3 cut(s)	98, 355, 546
Bme1390I	CCNGG	2 cut(s)	316, 443
Bme18I	GGWCC	1 cut(s)	405
BmeT110I	CYCGRG	1 cut(s)	380
BmgBI	CACGTC	1 cut(s)	196
BmgT120I	GGNCC	1 cut(s)	405
BmiI	GGNNCC	1 cut(s)	288
BmrFI	CCNGG	2 cut(s)	316, 443
BsaAI	YACGTR	1 cut(s)	455
BsaHI	GRCGYC	1 cut(s)	330
BsaJI	CCNNGG	2 cut(s)	315, 589
Bsc4I	CCNNNNNNNGG	1 cut(s)	427
Bse118I	RCCGGY	1 cut(s)	283
Bse1I	ACTGG	2 cut(s)	45, 128
Bse21I	CCTNAGG	1 cut(s)	422
BseBI	CCWGG	2 cut(s)	316, 443
BseDI	CCNNGG	2 cut(s)	315, 589
BseGI	GGATG	1 cut(s)	157
BseLI	CCNNNNNNNGG	1 cut(s)	427
BseMII	CTCAG	3 cut(s)	160, 436, 521
BseNI	ACTGG	2 cut(s)	45, 128
BseRI	GAGGAG	1 cut(s)	377
BseXI	GCAGC	2 cut(s)	365, 556
BseYI	CCCAGC	1 cut(s)	540
BsgI	GTGCAG	1 cut(s)	372
BshFI	GGCC	1 cut(s)	270
BsiHKCI	CYCGRG	1 cut(s)	380
BsiSI	CCGG	1 cut(s)	284
BslFI	GGGAC	2 cut(s)	496, 508
BslI	CCNNNNNNNGG	1 cut(s)	427
BsmAI	GTCTC	3 cut(s)	53, 350, 377
BsmBI	CGTCTC	1 cut(s)	350
BsmFI	GGGAC	2 cut(s)	496, 508
BsnI	GGCC	1 cut(s)	270
BsoBI	CYCGRG	1 cut(s)	380
Bsp1286I	GDGCHC	1 cut(s)	323
Bsp143I	GATC	1 cut(s)	9
BspACI	CCGC	3 cut(s)	97, 164, 530
BspANI	GGCC	1 cut(s)	270
BspCNI	CTCAG	3 cut(s)	159, 435, 520
BspLI	GGNNCC	1 cut(s)	288
BsrBI	CCGCTC	1 cut(s)	166
BsrFI	RCCGGY	1 cut(s)	283
BsrI	ACTGG	2 cut(s)	45, 128
BssAI	RCCGGY	1 cut(s)	283
BssECI	CCNNGG	2 cut(s)	315, 589
BssMI	GATC	1 cut(s)	9
BssNI	GRCGYC	1 cut(s)	330
Bst2UI	CCWGG	2 cut(s)	316, 443
Bst4CI	ACNGT	4 cut(s)	371, 405, 522, 593
Bst6I	CTCTTC	1 cut(s)	470
BstACI	GRCGYC	1 cut(s)	330
BstBAI	YACGTR	1 cut(s)	455
BstDEI	CTNAG	4 cut(s)	146, 422, 447, 507
BstDSI	CCRYGG	1 cut(s)	589
BstENI	CCTNNNNNAGG	1 cut(s)	425
BstF5I	GGATG	1 cut(s)	157
BstH2I	RGCGCY	1 cut(s)	378
BstHHI	GCGC	3 cut(s)	191, 260, 377
BstKTI	GATC	1 cut(s)	12
BstMAI	GTCTC	3 cut(s)	53, 350, 377
BstMBI	GATC	1 cut(s)	9
BstMWI	GCNNNNNNNGC	2 cut(s)	396, 550
BstNI	CCWGG	2 cut(s)	316, 443
BstSCI	CCNGG	2 cut(s)	314, 441
BstV1I	GCAGC	2 cut(s)	365, 556
Bsu36I	CCTNAGG	1 cut(s)	422
BsuRI	GGCC	1 cut(s)	270
BtgI	CCRYGG	1 cut(s)	589
BtrI	CACGTC	1 cut(s)	196
BtsCI	GGATG	1 cut(s)	157
BtsI	GCAGTG	1 cut(s)	190
BtsIMutI	CAGTG	1 cut(s)	190
CfoI	GCGC	3 cut(s)	191, 260, 377
Cfr10I	RCCGGY	1 cut(s)	283
Cfr13I	GGNCC	1 cut(s)	405
CpoI	CGGWCCG	1 cut(s)	405
CseI	GACGC	2 cut(s)	64, 338
CspI	CGGWCCG	1 cut(s)	405
DdeI	CTNAG	4 cut(s)	146, 422, 447, 507
DpnI	GATC	1 cut(s)	11
DpnII	GATC	1 cut(s)	9
DraIII	CACNNNGTG	1 cut(s)	458
Eam1104I	CTCTTC	1 cut(s)	470
EarI	CTCTTC	1 cut(s)	470
Eco24I	GRGCYC	1 cut(s)	323
Eco47I	GGWCC	1 cut(s)	405
Eco72I	CACGTG	1 cut(s)	455
Eco81I	CCTNAGG	1 cut(s)	422
Eco88I	CYCGRG	1 cut(s)	380
EcoNI	CCTNNNNNAGG	1 cut(s)	425
EcoRII	CCWGG	2 cut(s)	314, 441
EcoT38I	GRGCYC	1 cut(s)	323
Esp3I	CGTCTC	1 cut(s)	350
FaiI	YATR	2 cut(s)	468, 572
FaqI	GGGAC	2 cut(s)	496, 508
Fnu4HI	GCNGC	3 cut(s)	97, 354, 545
FokI	GGATG	1 cut(s)	144
FriOI	GRGCYC	1 cut(s)	323
Fsp4HI	GCNGC	3 cut(s)	97, 354, 545
FspBI	CTAG	3 cut(s)	93, 173, 387
GlaI	GCGC	3 cut(s)	190, 259, 376
GluI	GCNGC	3 cut(s)	97, 354, 545
GsaI	CCCAGC	1 cut(s)	544
HaeII	RGCGCY	1 cut(s)	378
HaeIII	GGCC	1 cut(s)	270
HapII	CCGG	1 cut(s)	284
HgaI	GACGC	2 cut(s)	64, 338
HhaI	GCGC	3 cut(s)	191, 260, 377
Hin1I	GRCGYC	1 cut(s)	330
Hin6I	GCGC	3 cut(s)	189, 258, 375
HinP1I	GCGC	3 cut(s)	189, 258, 375
HincII	GTYRAC	1 cut(s)	490
HindII	GTYRAC	1 cut(s)	490
HpaII	CCGG	1 cut(s)	284
Hpy166II	GTNNAC	2 cut(s)	244, 490
Hpy188I	TCNGA	2 cut(s)	149, 308
Hpy188III	TCNNGA	3 cut(s)	52, 380, 412
Hpy8I	GTNNAC	2 cut(s)	244, 490
Hpy99I	CGWCG	2 cut(s)	58, 332
HpyAV	CCTTC	3 cut(s)	75, 96, 271
HpyCH4III	ACNGT	4 cut(s)	371, 405, 522, 593
HpyCH4IV	ACGT	2 cut(s)	195, 454
HpyCH4V	TGCA	3 cut(s)	183, 353, 596
HpyF10VI	GCNNNNNNNGC	2 cut(s)	396, 550
HpyF3I	CTNAG	4 cut(s)	146, 422, 447, 507
HpySE526I	ACGT	2 cut(s)	195, 454
Hsp92I	GRCGYC	1 cut(s)	330
HspAI	GCGC	3 cut(s)	189, 258, 375
Kzo9I	GATC	1 cut(s)	9
LmnI	GCTCC	3 cut(s)	292, 382, 556
Lsp1109I	GCAGC	2 cut(s)	365, 556
MaeI	CTAG	3 cut(s)	93, 173, 387
MaeII	ACGT	2 cut(s)	195, 454
MaeIII	GTNAC	3 cut(s)	119, 212, 450
MalI	GATC	1 cut(s)	11
MbiI	CCGCTC	1 cut(s)	166
MboI	GATC	1 cut(s)	9
MboII	GAAGA	4 cut(s)	60, 69, 484, 487
MhlI	GDGCHC	1 cut(s)	323
MluCI	AATT	2 cut(s)	224, 580
MmeI	TCCRAC	1 cut(s)	331
MroXI	GAANNNNTTC	1 cut(s)	131
MslI	CAYNNNNRTG	1 cut(s)	591
MspI	CCGG	1 cut(s)	284
MspR9I	CCNGG	2 cut(s)	316, 443
MvaI	CCWGG	2 cut(s)	316, 443
MwoI	GCNNNNNNNGC	2 cut(s)	396, 550
NdeII	GATC	1 cut(s)	9
NlaIV	GGNNCC	1 cut(s)	288
NmuCI	GTSAC	2 cut(s)	119, 450
OliI	CACNNNNGTG	1 cut(s)	591
PdmI	GAANNNNTTC	1 cut(s)	131
PkrI	GCNGC	3 cut(s)	98, 355, 546
PmaCI	CACGTG	1 cut(s)	455
PmlI	CACGTG	1 cut(s)	455
Ppu21I	YACGTR	1 cut(s)	455
Psp6I	CCWGG	2 cut(s)	314, 441
PspCI	CACGTG	1 cut(s)	455
PspFI	CCCAGC	1 cut(s)	540
PspGI	CCWGG	2 cut(s)	314, 441
PspN4I	GGNNCC	1 cut(s)	288
PspPI	GGNCC	1 cut(s)	405
RseI	CAYNNNNRTG	1 cut(s)	591
Rsr2I	CGGWCCG	1 cut(s)	405
RsrII	CGGWCCG	1 cut(s)	405
SatI	GCNGC	3 cut(s)	97, 354, 545
Sau3AI	GATC	1 cut(s)	9
Sau96I	GGNCC	1 cut(s)	405
ScrFI	CCNGG	2 cut(s)	316, 443
SduI	GDGCHC	1 cut(s)	323
SetI	ASST	9 cut(s)	88, 147, 178, 198, 219, 432, 457, 467, 565
SinI	GGWCC	1 cut(s)	405
SmiMI	CAYNNNNRTG	1 cut(s)	591
Sse9I	AATT	2 cut(s)	224, 580
SsiI	CCGC	3 cut(s)	97, 164, 530
SspMI	CTAG	3 cut(s)	93, 173, 387
StyD4I	CCNGG	2 cut(s)	314, 441
TaaI	ACNGT	4 cut(s)	371, 405, 522, 593
TaiI	ACGT	2 cut(s)	198, 457
TaqI	TCGA	3 cut(s)	53, 201, 327
TasI	AATT	2 cut(s)	224, 580
TauI	GCSGC	1 cut(s)	99
TscAI	CASTG	1 cut(s)	190
TseFI	GTSAC	2 cut(s)	119, 450
TseI	GCWGC	2 cut(s)	353, 544
Tsp45I	GTSAC	2 cut(s)	119, 450
TspGWI	ACGGA	2 cut(s)	338, 397
TspRI	CASTG	1 cut(s)	190
VpaK11BI	GGWCC	1 cut(s)	405
XagI	CCTNNNNNAGG	1 cut(s)	425
XmnI	GAANNNNTTC	1 cut(s)	131
XspI	CTAG	3 cut(s)	93, 173, 387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.