Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0012719

Physical Location & Seq

Genomic Coordinates Forward (+)

23470468 .. 23470854

Gene Structure 387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g22620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGTGCAGCGGAGCCCACGTACTGGAGTTCCTCCGGTATCTCGACCAGTTCGGCAAAACCAAGATCCACAACCAGAACTGCCCGTTCTTCGGCCTCCCAAACCCACCTGCTCCCTGCCCCTGTCCGCTGAGGCAGGCGTGGGGCAGCCTGGACGCCCTCATTGGCCGCCTTCGAGCTGCCTATGATGAGCACGGCGGGAGGCCTGAAGGCAATCCCTTTGGAGCCAGAGCTGTGAGGCTCTACTTGCGTGAAGTTCGTGATTTCCAGGCAAAGGCAAGAGGGGTTAGTTATGAGAAGAAGAGGAAGAGGCCCAACAATAACAACCCAAAGTCTAGCATGAGTACGGCCATGATCACAAGTTCTGCTTCTACAACTACAACAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009639 GO:0009653 GO:0009826 GO:0009987 GO:0010114 GO:0010218 GO:0010467 GO:0016043 GO:0016049 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0032502 GO:0032774 GO:0032989 GO:0034641 GO:0034645 GO:0034654 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048589 GO:0048856 GO:0048869 GO:0050896 GO:0060560 GO:0071704 GO:0071840 GO:0090304 GO:0090698 GO:0097659 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF640

Protein Analysis

129

Amino Acids

14.2

Weight (kDa)

9.97

Isoelectric Point (pI)

40.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ALOG_dom	PF04852	2 - 87	3e-46	ALOG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0012719)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04510 AT5G28490
fragaria_vesca	FvH4_6g01940
malus_domestica	MD04G1229700.v1.1
prunus_persica	Prupe.6G349800_v2.0.a1
pyrus_communis	pycom04g20350 pycom12g22620 pycom12g22670
rosa_chinensis	RchiOBHm_Chr3g0449731
rosa_laevigata	RLG00000025801
rosa_multiflora	Rmu_sc0000610.1_g000016
rosa_roxburghii	Rroxscaffold_6G00427600
rosa_rugosa	Rorug02G0622800
rosa_samantha	Rh3AG021200 Rh3BG021900 Rh3CG020500 Rh3DG021700
rosa_wichuraiana	Rw3G001750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	115
Acc36I	ACCTGC	1 cut(s)	115
AccB7I	CCANNNNNTGG	1 cut(s)	22
AciI	CCGC	4 cut(s)	9, 125, 166, 195
AclWI	GGATC	1 cut(s)	58
AcoI	YGGCCR	2 cut(s)	163, 345
AcuI	CTGAAG	1 cut(s)	225
AcyI	GRCGYC	1 cut(s)	153
AfaI	GTAC	2 cut(s)	21, 343
AfiI	CCNNNNNNNGG	3 cut(s)	22, 89, 271
AjnI	CCWGG	2 cut(s)	147, 264
AluBI	AGCT	2 cut(s)	176, 230
AluI	AGCT	2 cut(s)	176, 230
Alw21I	GWGCWC	1 cut(s)	192
AlwI	GGATC	1 cut(s)	58
AoxI	GGCC	5 cut(s)	91, 163, 200, 308, 345
ApeKI	GCWGC	3 cut(s)	6, 144, 176
AspS9I	GGNCC	1 cut(s)	309
BanII	GRGCYC	1 cut(s)	16
Bbv12I	GWGCWC	1 cut(s)	192
BbvCI	CCTCAGC	1 cut(s)	128
BbvI	GCAGC	3 cut(s)	18, 156, 163
BceAI	ACGGC	2 cut(s)	208, 360
BciT130I	CCWGG	2 cut(s)	149, 266
BclI	TGATCA	1 cut(s)	351
BfaI	CTAG	1 cut(s)	333
BfuAI	ACCTGC	1 cut(s)	115
BisI	GCNGC	4 cut(s)	7, 145, 166, 177
BlsI	GCNGC	4 cut(s)	8, 146, 167, 178
Bme1390I	CCNGG	2 cut(s)	149, 266
BmgT120I	GGNCC	1 cut(s)	309
BmiI	GGNNCC	2 cut(s)	13, 223
BmrFI	CCNGG	2 cut(s)	149, 266
BpmI	CTGGAG	1 cut(s)	44
Bpu10I	CCTNAGC	1 cut(s)	128
BsaAI	YACGTR	1 cut(s)	19
BsaHI	GRCGYC	1 cut(s)	153
BsaWI	WCCGGW	1 cut(s)	33
BsaXI	ACNNNNNCTCC	1 cut(s)	33
Bsc4I	CCNNNNNNNGG	3 cut(s)	22, 89, 271
Bse1I	ACTGG	2 cut(s)	27, 46
BseBI	CCWGG	2 cut(s)	149, 266
BseLI	CCNNNNNNNGG	3 cut(s)	22, 89, 271
BseMII	CTCAG	1 cut(s)	119
BseNI	ACTGG	2 cut(s)	27, 46
BseXI	GCAGC	3 cut(s)	18, 156, 163
BsgI	GTGCAG	1 cut(s)	25
BshFI	GGCC	5 cut(s)	93, 165, 202, 310, 347
BsiHKAI	GWGCWC	1 cut(s)	192
BsiSI	CCGG	1 cut(s)	34
BslI	CCNNNNNNNGG	3 cut(s)	22, 89, 271
BsnI	GGCC	5 cut(s)	93, 165, 202, 310, 347
Bsp1286I	GDGCHC	2 cut(s)	16, 192
Bsp143I	GATC	2 cut(s)	63, 351
BspACI	CCGC	4 cut(s)	9, 125, 166, 195
BspANI	GGCC	5 cut(s)	93, 165, 202, 310, 347
BspCNI	CTCAG	1 cut(s)	120
BspLI	GGNNCC	2 cut(s)	13, 223
BspMI	ACCTGC	1 cut(s)	115
BspPI	GGATC	1 cut(s)	58
BsrI	ACTGG	2 cut(s)	27, 46
BssMI	GATC	2 cut(s)	63, 351
BssNI	GRCGYC	1 cut(s)	153
Bst2UI	CCWGG	2 cut(s)	149, 266
Bst6I	CTCTTC	2 cut(s)	293, 299
BstACI	GRCGYC	1 cut(s)	153
BstBAI	YACGTR	1 cut(s)	19
BstC8I	GCNNGC	1 cut(s)	135
BstDEI	CTNAG	1 cut(s)	128
BstKTI	GATC	2 cut(s)	66, 354
BstMBI	GATC	2 cut(s)	63, 351
BstMWI	GCNNNNNNNGC	1 cut(s)	244
BstNI	CCWGG	2 cut(s)	149, 266
BstSCI	CCNGG	2 cut(s)	147, 264
BstV1I	GCAGC	3 cut(s)	18, 156, 163
BstX2I	RGATCY	1 cut(s)	63
BstYI	RGATCY	1 cut(s)	63
BsuRI	GGCC	5 cut(s)	93, 165, 202, 310, 347
BveI	ACCTGC	1 cut(s)	115
Cac8I	GCNNGC	1 cut(s)	135
Cfr13I	GGNCC	1 cut(s)	309
CseI	GACGC	1 cut(s)	161
Csp6I	GTAC	2 cut(s)	20, 342
CviAII	CATG	2 cut(s)	337, 349
CviQI	GTAC	2 cut(s)	20, 342
DdeI	CTNAG	1 cut(s)	128
DpnI	GATC	2 cut(s)	65, 353
DpnII	GATC	2 cut(s)	63, 351
EaeI	YGGCCR	2 cut(s)	163, 345
Eam1104I	CTCTTC	2 cut(s)	293, 299
EarI	CTCTTC	2 cut(s)	293, 299
Eco147I	AGGCCT	1 cut(s)	202
Eco24I	GRGCYC	1 cut(s)	16
Eco57I	CTGAAG	1 cut(s)	225
EcoRII	CCWGG	2 cut(s)	147, 264
EcoT38I	GRGCYC	1 cut(s)	16
FaeI	CATG	2 cut(s)	340, 352
FaiI	YATR	4 cut(s)	183, 291, 338, 350
FalI	AAGNNNNNCTT	2 cut(s)	349, 381
FatI	CATG	2 cut(s)	336, 348
FauI	CCCGC	1 cut(s)	188
FbaI	TGATCA	1 cut(s)	351
Fnu4HI	GCNGC	4 cut(s)	7, 145, 166, 177
FriOI	GRGCYC	1 cut(s)	16
Fsp4HI	GCNGC	4 cut(s)	7, 145, 166, 177
FspBI	CTAG	1 cut(s)	333
GluI	GCNGC	4 cut(s)	7, 145, 166, 177
GsuI	CTGGAG	1 cut(s)	44
HaeIII	GGCC	5 cut(s)	93, 165, 202, 310, 347
HapII	CCGG	1 cut(s)	34
HgaI	GACGC	1 cut(s)	161
Hin1I	GRCGYC	1 cut(s)	153
Hin1II	CATG	2 cut(s)	340, 352
HpaII	CCGG	1 cut(s)	34
Hpy188III	TCNNGA	2 cut(s)	41, 257
HpyAV	CCTTC	2 cut(s)	179, 200
HpyCH4IV	ACGT	1 cut(s)	18
HpyCH4V	TGCA	1 cut(s)	6
HpyF10VI	GCNNNNNNNGC	1 cut(s)	244
HpyF3I	CTNAG	1 cut(s)	128
HpySE526I	ACGT	1 cut(s)	18
Hsp92I	GRCGYC	1 cut(s)	153
Hsp92II	CATG	2 cut(s)	340, 352
Ksp22I	TGATCA	1 cut(s)	351
Kzo9I	GATC	2 cut(s)	63, 351
LmnI	GCTCC	3 cut(s)	11, 115, 221
Lsp1109I	GCAGC	3 cut(s)	18, 156, 163
MaeI	CTAG	1 cut(s)	333
MaeII	ACGT	1 cut(s)	18
MalI	GATC	2 cut(s)	65, 353
MboI	GATC	2 cut(s)	63, 351
MboII	GAAGA	4 cut(s)	79, 307, 310, 316
MflI	RGATCY	1 cut(s)	63
MhlI	GDGCHC	2 cut(s)	16, 192
MnlI	CCTC	9 cut(s)	41, 104, 123, 167, 192, 228, 272, 294, 300
MspA1I	CMGCKG	2 cut(s)	9, 127
MspI	CCGG	1 cut(s)	34
MspR9I	CCNGG	2 cut(s)	149, 266
MvaI	CCWGG	2 cut(s)	149, 266
MwoI	GCNNNNNNNGC	1 cut(s)	244
NdeII	GATC	2 cut(s)	63, 351
NlaIII	CATG	2 cut(s)	340, 352
NlaIV	GGNNCC	2 cut(s)	13, 223
PaqCI	CACCTGC	1 cut(s)	115
PceI	AGGCCT	1 cut(s)	202
PflMI	CCANNNNNTGG	1 cut(s)	22
PkrI	GCNGC	4 cut(s)	8, 146, 167, 178
Ppu21I	YACGTR	1 cut(s)	19
Psp6I	CCWGG	2 cut(s)	147, 264
PspGI	CCWGG	2 cut(s)	147, 264
PspN4I	GGNNCC	2 cut(s)	13, 223
PspPI	GGNCC	1 cut(s)	309
PsuI	RGATCY	1 cut(s)	63
RsaI	GTAC	2 cut(s)	21, 343
RsaNI	GTAC	2 cut(s)	20, 342
SatI	GCNGC	4 cut(s)	7, 145, 166, 177
Sau3AI	GATC	2 cut(s)	63, 351
Sau96I	GGNCC	1 cut(s)	309
ScrFI	CCNGG	2 cut(s)	149, 266
SduI	GDGCHC	2 cut(s)	16, 192
SetI	ASST	4 cut(s)	21, 109, 178, 232
SseBI	AGGCCT	1 cut(s)	202
SsiI	CCGC	4 cut(s)	9, 125, 166, 195
SspMI	CTAG	1 cut(s)	333
StuI	AGGCCT	1 cut(s)	202
StyD4I	CCNGG	2 cut(s)	147, 264
TaiI	ACGT	1 cut(s)	21
TaqI	TCGA	2 cut(s)	42, 172
TauI	GCSGC	1 cut(s)	168
TseI	GCWGC	3 cut(s)	6, 144, 176
Van91I	CCANNNNNTGG	1 cut(s)	22
XspI	CTAG	1 cut(s)	333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.