Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0012719

Physical Location & Seq

Genomic Coordinates Forward (+)

23514482 .. 23515078

Gene Structure 597 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g22670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGATTTAATTTCAAACCCTATTTCCAACAATCCCAGCATCACCTTTGAAACCCCTATAATCAACAATAACATGGCCATGATCTCTCCCCCATCCTCAGCAATATCCACAACCCCCACCACTCCCAGCCGCTACGAAAACCAAAAGCGGCGGGACTGGAACACCTTCTGCCAGTACCTCCGAAACCACAGGCCGCCGCTGTCGCTCCCGATGTGCAGCGGAGCCCACGTACTGGAGTTCCTCCGGTATCTCGACCAGTTCGGCAAAACCAAGATCCACAACCAGAACTGCCCGTTCTTCGGCCTCCCAAACCCACCTGCTCCCTGCCCCTGTCCGCTGAGGCAGGCGTGGGGCAGCCTGGACGCCCTCATTGGCCGCCTTCGAGCTGCCTATGATGAGCACGGCGGGAGGCCTGAAGGCAATCCCTTTGGAGCCAGAGCTGTGAGGCTCTACTTGCGTGAAGTTCGTGATTTCCAGGCAAAGGCAAGAGGGGTTAGTTATGAGAAGAAGAGGAAGAGGCCCAACAATAACAACCCAAAGTCTAGCATGAGTACGGCCATGATCACAAGTTCTGCTTCTACAACTACAACAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009639 GO:0009653 GO:0009826 GO:0009987 GO:0010114 GO:0010218 GO:0010467 GO:0016043 GO:0016049 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0032502 GO:0032774 GO:0032989 GO:0034641 GO:0034645 GO:0034654 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048589 GO:0048856 GO:0048869 GO:0050896 GO:0060560 GO:0071704 GO:0071840 GO:0090304 GO:0090698 GO:0097659 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF640

Protein Analysis

199

Amino Acids

22.17

Weight (kDa)

9.92

Isoelectric Point (pI)

46.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ALOG_dom	PF04852	36 - 157	4.7e-66	ALOG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012719)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04510 AT5G28490
fragaria_vesca	FvH4_6g01940
malus_domestica	MD04G1229700.v1.1
prunus_persica	Prupe.6G349800_v2.0.a1
pyrus_communis	pycom04g20350 pycom12g22620 pycom12g22670
rosa_chinensis	RchiOBHm_Chr3g0449731
rosa_laevigata	RLG00000025801
rosa_multiflora	Rmu_sc0000610.1_g000016
rosa_roxburghii	Rroxscaffold_6G00427600
rosa_rugosa	Rorug02G0622800
rosa_samantha	Rh3AG021200 Rh3BG021900 Rh3CG020500 Rh3DG021700
rosa_wichuraiana	Rw3G001750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	325
Acc36I	ACCTGC	1 cut(s)	325
AccB7I	CCANNNNNTGG	1 cut(s)	232
AciI	CCGC	9 cut(s)	130, 148, 151, 194, 197, 219, 335, 376, 405
AclWI	GGATC	1 cut(s)	268
AcoI	YGGCCR	3 cut(s)	75, 373, 555
AcuI	CTGAAG	1 cut(s)	435
AcyI	GRCGYC	1 cut(s)	363
AfaI	GTAC	3 cut(s)	176, 231, 553
AfiI	CCNNNNNNNGG	3 cut(s)	232, 299, 481
AgsI	TTSAA	2 cut(s)	15, 50
AjnI	CCWGG	2 cut(s)	357, 474
AluBI	AGCT	2 cut(s)	386, 440
AluI	AGCT	2 cut(s)	386, 440
Alw21I	GWGCWC	1 cut(s)	402
AlwI	GGATC	1 cut(s)	268
AoxI	GGCC	7 cut(s)	75, 191, 301, 373, 410, 518, 555
ApeKI	GCWGC	3 cut(s)	216, 354, 386
Asp700I	GAANNNNTTC	1 cut(s)	164
AspS9I	GGNCC	1 cut(s)	519
AsuHPI	GGTGA	1 cut(s)	34
BalI	TGGCCA	1 cut(s)	77
BanII	GRGCYC	1 cut(s)	226
Bbv12I	GWGCWC	1 cut(s)	402
BbvCI	CCTCAGC	2 cut(s)	97, 338
BbvI	GCAGC	3 cut(s)	228, 366, 373
BccI	CCATC	1 cut(s)	100
BceAI	ACGGC	2 cut(s)	418, 570
BciT130I	CCWGG	2 cut(s)	359, 476
BclI	TGATCA	1 cut(s)	561
BfaI	CTAG	1 cut(s)	543
BfuAI	ACCTGC	1 cut(s)	325
BisI	GCNGC	8 cut(s)	130, 149, 194, 197, 217, 355, 376, 387
BlsI	GCNGC	8 cut(s)	131, 150, 195, 198, 218, 356, 377, 388
Bme1390I	CCNGG	2 cut(s)	359, 476
BmgT120I	GGNCC	1 cut(s)	519
BmiI	GGNNCC	2 cut(s)	223, 433
BmrFI	CCNGG	2 cut(s)	359, 476
BmsI	GCATC	1 cut(s)	48
BpmI	CTGGAG	1 cut(s)	254
Bpu10I	CCTNAGC	2 cut(s)	97, 338
BsaAI	YACGTR	1 cut(s)	229
BsaHI	GRCGYC	1 cut(s)	363
BsaWI	WCCGGW	1 cut(s)	243
BsaXI	ACNNNNNCTCC	2 cut(s)	213, 243
Bsc4I	CCNNNNNNNGG	3 cut(s)	232, 299, 481
Bse1I	ACTGG	4 cut(s)	161, 172, 237, 256
BseBI	CCWGG	2 cut(s)	359, 476
BseGI	GGATG	1 cut(s)	92
BseLI	CCNNNNNNNGG	3 cut(s)	232, 299, 481
BseMII	CTCAG	2 cut(s)	111, 329
BseNI	ACTGG	4 cut(s)	161, 172, 237, 256
BseXI	GCAGC	3 cut(s)	228, 366, 373
BseYI	CCCAGC	2 cut(s)	35, 125
BsgI	GTGCAG	1 cut(s)	235
BshFI	GGCC	7 cut(s)	77, 193, 303, 375, 412, 520, 557
BsiHKAI	GWGCWC	1 cut(s)	402
BsiSI	CCGG	1 cut(s)	244
BslFI	GGGAC	1 cut(s)	167
BslI	CCNNNNNNNGG	3 cut(s)	232, 299, 481
BsmFI	GGGAC	1 cut(s)	167
BsnI	GGCC	7 cut(s)	77, 193, 303, 375, 412, 520, 557
Bsp1286I	GDGCHC	2 cut(s)	226, 402
Bsp143I	GATC	3 cut(s)	81, 273, 561
BspACI	CCGC	9 cut(s)	130, 148, 151, 194, 197, 219, 335, 376, 405
BspANI	GGCC	7 cut(s)	77, 193, 303, 375, 412, 520, 557
BspCNI	CTCAG	2 cut(s)	110, 330
BspLI	GGNNCC	2 cut(s)	223, 433
BspMI	ACCTGC	1 cut(s)	325
BspPI	GGATC	1 cut(s)	268
BsrI	ACTGG	4 cut(s)	161, 172, 237, 256
BssMI	GATC	3 cut(s)	81, 273, 561
BssNI	GRCGYC	1 cut(s)	363
Bst2UI	CCWGG	2 cut(s)	359, 476
Bst6I	CTCTTC	2 cut(s)	503, 509
BstACI	GRCGYC	1 cut(s)	363
BstBAI	YACGTR	1 cut(s)	229
BstC8I	GCNNGC	1 cut(s)	345
BstDEI	CTNAG	2 cut(s)	97, 338
BstF5I	GGATG	1 cut(s)	92
BstKTI	GATC	3 cut(s)	84, 276, 564
BstMBI	GATC	3 cut(s)	81, 273, 561
BstMWI	GCNNNNNNNGC	2 cut(s)	202, 454
BstNI	CCWGG	2 cut(s)	359, 476
BstSCI	CCNGG	2 cut(s)	357, 474
BstV1I	GCAGC	3 cut(s)	228, 366, 373
BstX2I	RGATCY	1 cut(s)	273
BstYI	RGATCY	1 cut(s)	273
BsuRI	GGCC	7 cut(s)	77, 193, 303, 375, 412, 520, 557
BtsCI	GGATG	1 cut(s)	92
BveI	ACCTGC	1 cut(s)	325
Cac8I	GCNNGC	1 cut(s)	345
Cfr13I	GGNCC	1 cut(s)	519
CseI	GACGC	1 cut(s)	371
Csp6I	GTAC	3 cut(s)	175, 230, 552
CviAII	CATG	4 cut(s)	73, 79, 547, 559
CviQI	GTAC	3 cut(s)	175, 230, 552
DdeI	CTNAG	2 cut(s)	97, 338
DpnI	GATC	3 cut(s)	83, 275, 563
DpnII	GATC	3 cut(s)	81, 273, 561
EaeI	YGGCCR	3 cut(s)	75, 373, 555
Eam1104I	CTCTTC	2 cut(s)	503, 509
EarI	CTCTTC	2 cut(s)	503, 509
Eco147I	AGGCCT	1 cut(s)	412
Eco24I	GRGCYC	1 cut(s)	226
Eco57I	CTGAAG	1 cut(s)	435
EcoRII	CCWGG	2 cut(s)	357, 474
EcoT38I	GRGCYC	1 cut(s)	226
FaeI	CATG	4 cut(s)	76, 82, 550, 562
FaiI	YATR	7 cut(s)	59, 74, 80, 393, 501, 548, 560
FalI	AAGNNNNNCTT	2 cut(s)	559, 591
FaqI	GGGAC	1 cut(s)	167
FatI	CATG	4 cut(s)	72, 78, 546, 558
FauI	CCCGC	2 cut(s)	144, 398
FbaI	TGATCA	1 cut(s)	561
Fnu4HI	GCNGC	8 cut(s)	130, 149, 194, 197, 217, 355, 376, 387
FokI	GGATG	1 cut(s)	79
FriOI	GRGCYC	1 cut(s)	226
Fsp4HI	GCNGC	8 cut(s)	130, 149, 194, 197, 217, 355, 376, 387
FspBI	CTAG	1 cut(s)	543
GluI	GCNGC	8 cut(s)	130, 149, 194, 197, 217, 355, 376, 387
GsaI	CCCAGC	2 cut(s)	39, 129
GsuI	CTGGAG	1 cut(s)	254
HaeIII	GGCC	7 cut(s)	77, 193, 303, 375, 412, 520, 557
HapII	CCGG	1 cut(s)	244
HgaI	GACGC	1 cut(s)	371
Hin1I	GRCGYC	1 cut(s)	363
Hin1II	CATG	4 cut(s)	76, 82, 550, 562
HpaII	CCGG	1 cut(s)	244
HphI	GGTGA	1 cut(s)	34
Hpy188I	TCNGA	1 cut(s)	182
Hpy188III	TCNNGA	3 cut(s)	208, 251, 467
HpyAV	CCTTC	3 cut(s)	175, 389, 410
HpyCH4IV	ACGT	1 cut(s)	228
HpyCH4V	TGCA	1 cut(s)	216
HpyF10VI	GCNNNNNNNGC	2 cut(s)	202, 454
HpyF3I	CTNAG	2 cut(s)	97, 338
HpySE526I	ACGT	1 cut(s)	228
Hsp92I	GRCGYC	1 cut(s)	363
Hsp92II	CATG	4 cut(s)	76, 82, 550, 562
Ksp22I	TGATCA	1 cut(s)	561
Kzo9I	GATC	3 cut(s)	81, 273, 561
LmnI	GCTCC	4 cut(s)	210, 221, 325, 431
Lsp1109I	GCAGC	3 cut(s)	228, 366, 373
LweI	GCATC	1 cut(s)	48
MaeI	CTAG	1 cut(s)	543
MaeII	ACGT	1 cut(s)	228
MalI	GATC	3 cut(s)	83, 275, 563
MboI	GATC	3 cut(s)	81, 273, 561
MboII	GAAGA	4 cut(s)	289, 517, 520, 526
MflI	RGATCY	1 cut(s)	273
MhlI	GDGCHC	2 cut(s)	226, 402
MlsI	TGGCCA	1 cut(s)	77
MluCI	AATT	1 cut(s)	9
MluNI	TGGCCA	1 cut(s)	77
MmeI	TCCRAC	1 cut(s)	51
Mox20I	TGGCCA	1 cut(s)	77
MroXI	GAANNNNTTC	1 cut(s)	164
MscI	TGGCCA	1 cut(s)	77
MseI	TTAA	1 cut(s)	8
MslI	CAYNNNNRTG	1 cut(s)	77
Msp20I	TGGCCA	1 cut(s)	77
MspA1I	CMGCKG	3 cut(s)	199, 219, 337
MspI	CCGG	1 cut(s)	244
MspR9I	CCNGG	2 cut(s)	359, 476
MvaI	CCWGG	2 cut(s)	359, 476
MwoI	GCNNNNNNNGC	2 cut(s)	202, 454
NdeII	GATC	3 cut(s)	81, 273, 561
NlaIII	CATG	4 cut(s)	76, 82, 550, 562
NlaIV	GGNNCC	2 cut(s)	223, 433
PaqCI	CACCTGC	1 cut(s)	325
PceI	AGGCCT	1 cut(s)	412
PdmI	GAANNNNTTC	1 cut(s)	164
PflMI	CCANNNNNTGG	1 cut(s)	232
PkrI	GCNGC	8 cut(s)	131, 150, 195, 198, 218, 356, 377, 388
Ppu21I	YACGTR	1 cut(s)	229
Psp6I	CCWGG	2 cut(s)	357, 474
PspFI	CCCAGC	2 cut(s)	35, 125
PspGI	CCWGG	2 cut(s)	357, 474
PspN4I	GGNNCC	2 cut(s)	223, 433
PspPI	GGNCC	1 cut(s)	519
PsuI	RGATCY	1 cut(s)	273
RsaI	GTAC	3 cut(s)	176, 231, 553
RsaNI	GTAC	3 cut(s)	175, 230, 552
RseI	CAYNNNNRTG	1 cut(s)	77
SaqAI	TTAA	1 cut(s)	8
SatI	GCNGC	8 cut(s)	130, 149, 194, 197, 217, 355, 376, 387
Sau3AI	GATC	3 cut(s)	81, 273, 561
Sau96I	GGNCC	1 cut(s)	519
ScrFI	CCNGG	2 cut(s)	359, 476
SduI	GDGCHC	2 cut(s)	226, 402
SetI	ASST	7 cut(s)	47, 167, 180, 231, 319, 388, 442
SfaNI	GCATC	1 cut(s)	48
SmiMI	CAYNNNNRTG	1 cut(s)	77
Sse9I	AATT	1 cut(s)	9
SseBI	AGGCCT	1 cut(s)	412
SsiI	CCGC	9 cut(s)	130, 148, 151, 194, 197, 219, 335, 376, 405
SspMI	CTAG	1 cut(s)	543
StuI	AGGCCT	1 cut(s)	412
StyD4I	CCNGG	2 cut(s)	357, 474
TaiI	ACGT	1 cut(s)	231
TaqI	TCGA	2 cut(s)	252, 382
TasI	AATT	1 cut(s)	9
TauI	GCSGC	5 cut(s)	132, 151, 196, 199, 378
Tru1I	TTAA	1 cut(s)	8
Tru9I	TTAA	1 cut(s)	8
TseI	GCWGC	3 cut(s)	216, 354, 386
Van91I	CCANNNNNTGG	1 cut(s)	232
XmnI	GAANNNNTTC	1 cut(s)	164
XspI	CTAG	1 cut(s)	543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.