Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0012719

Physical Location & Seq

Genomic Coordinates Reverse (-)

48170314 .. 48173663

Gene Structure 3350 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00427600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGACTTGGTTTCATCAGCTCCAACCAACTCTCCCAGCAGCGCCTTTGAAACCCCATCTGCCTTGGCCATTAGTACTAGTAATGGTACAGGGGCAAACAACAGTAACAGTACCAGTACTACTGCTCTCATTACTTCTCCTAGCCGATATGAGAACCAGAAGAGGCGAGACTGGAACACCTTCTGCCAGTACCTCCGTAACCATCGTCCTCCGCTGTCCCTTCCCATGTGTAGCGGGGCCCACGTCCTGGAGTTCCTTCGGTACTTGGATCAGTTCGGAAAGACCAAGATCCACAACCACAGCTGCCCCTTCTTCGGGCTGCCAAACCCGCCCGCGCCCTGCCCCTGCCCGCTTCGACAGGCCTGGGGCAGCTTGGACGCTCTCATTGGGCGCCTCCGGGCAGCTTATGAGGAGCATGGAGGGCGTCCCGAGGCGAACCCTTTTGGGGCAAGAGCTGTGAGGCTGTACCTCCGCGAGGTTCGTGATTTCCAGTCCAAGGCCAGAGGAGTGAGCTATGACAAGAAGAGGAAGAGGCCCAAGCCAAGGCCAACACCAGTACCAACACCAACAACTAGTGCCACTACTACTAGTACCACTACTAGTGGCACGACCTCCTCGTCTGCAACTCTGTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009639 GO:0009653 GO:0009826 GO:0009987 GO:0010114 GO:0010218 GO:0010467 GO:0016043 GO:0016049 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0032502 GO:0032774 GO:0032989 GO:0034641 GO:0034645 GO:0034654 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048589 GO:0048856 GO:0048869 GO:0050896 GO:0060560 GO:0071704 GO:0071840 GO:0090304 GO:0090698 GO:0097659 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF640

Protein Analysis

211

Amino Acids

23.0

Weight (kDa)

10.03

Isoelectric Point (pI)

48.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ALOG_dom	PF04852	45 - 162	4.4e-65	ALOG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012719)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04510 AT5G28490
fragaria_vesca	FvH4_6g01940
malus_domestica	MD04G1229700.v1.1
prunus_persica	Prupe.6G349800_v2.0.a1
pyrus_communis	pycom04g20350 pycom12g22620 pycom12g22670
rosa_chinensis	RchiOBHm_Chr3g0449731
rosa_laevigata	RLG00000025801
rosa_multiflora	Rmu_sc0000610.1_g000016
rosa_roxburghii	Rroxscaffold_6G00427600
rosa_rugosa	Rorug02G0622800
rosa_samantha	Rh3AG021200 Rh3BG021900 Rh3CG020500 Rh3DG021700
rosa_wichuraiana	Rw3G001750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	616
AccB1I	GGYRCC	1 cut(s)	390
AccB7I	CCANNNNNTGG	1 cut(s)	247
AccII	CGCG	2 cut(s)	335, 474
AciI	CCGC	6 cut(s)	212, 234, 329, 333, 350, 472
AclWI	GGATC	2 cut(s)	276, 283
AcoI	YGGCCR	1 cut(s)	66
AcyI	GRCGYC	2 cut(s)	391, 424
AfaI	GTAC	9 cut(s)	76, 88, 112, 118, 191, 263, 467, 558, 592
AfiI	CCNNNNNNNGG	7 cut(s)	247, 314, 315, 445, 475, 496, 543
AgsI	TTSAA	1 cut(s)	50
AhlI	ACTAGT	4 cut(s)	77, 572, 587, 599
AjiI	CACGTC	1 cut(s)	244
AjnI	CCWGG	2 cut(s)	246, 362
AluBI	AGCT	6 cut(s)	20, 303, 372, 404, 455, 513
AluI	AGCT	6 cut(s)	20, 303, 372, 404, 455, 513
Alw26I	GTCTC	1 cut(s)	162
AlwI	GGATC	2 cut(s)	276, 283
Ama87I	CYCGRG	1 cut(s)	428
AoxI	GGCC	6 cut(s)	66, 237, 360, 498, 533, 545
ApaI	GGGCCC	1 cut(s)	241
ApeKI	GCWGC	5 cut(s)	39, 303, 319, 369, 401
Asp700I	GAANNNNTTC	1 cut(s)	179
AspLEI	GCGC	3 cut(s)	44, 337, 393
AspS9I	GGNCC	3 cut(s)	237, 238, 534
AsuC2I	CCSGG	1 cut(s)	398
AvaI	CYCGRG	1 cut(s)	428
BaeGI	GKGCMC	1 cut(s)	241
BaeI	ACNNNNGTAYC	2 cut(s)	540, 573
BalI	TGGCCA	1 cut(s)	68
BanI	GGYRCC	1 cut(s)	390
BanII	GRGCYC	1 cut(s)	241
BbvI	GCAGC	5 cut(s)	51, 290, 306, 381, 413
BccI	CCATC	2 cut(s)	64, 210
BciT130I	CCWGG	2 cut(s)	248, 364
BcnI	CCSGG	1 cut(s)	398
BcoDI	GTCTC	1 cut(s)	162
BcuI	ACTAGT	4 cut(s)	77, 572, 587, 599
BfaI	CTAG	5 cut(s)	78, 141, 573, 588, 600
BfoI	RGCGCY	2 cut(s)	45, 394
BisI	GCNGC	5 cut(s)	40, 304, 320, 370, 402
BlsI	GCNGC	5 cut(s)	41, 305, 321, 371, 403
BmcAI	AGTACT	2 cut(s)	76, 118
Bme1390I	CCNGG	3 cut(s)	248, 364, 398
BmeT110I	CYCGRG	1 cut(s)	428
BmgBI	CACGTC	1 cut(s)	244
BmgT120I	GGNCC	3 cut(s)	237, 238, 534
BmiI	GGNNCC	3 cut(s)	238, 239, 392
BmrFI	CCNGG	3 cut(s)	248, 364, 398
BpmI	CTGGAG	1 cut(s)	269
BpuMI	CCSGG	1 cut(s)	398
BsaHI	GRCGYC	2 cut(s)	391, 424
BsaJI	CCNNGG	5 cut(s)	63, 363, 429, 495, 542
BsaXI	ACNNNNNCTCC	2 cut(s)	16, 46
Bsc4I	CCNNNNNNNGG	7 cut(s)	247, 314, 315, 445, 475, 496, 543
Bse1I	ACTGG	5 cut(s)	114, 176, 187, 490, 554
BseBI	CCWGG	2 cut(s)	248, 364
BseDI	CCNNGG	5 cut(s)	63, 363, 429, 495, 542
BseLI	CCNNNNNNNGG	7 cut(s)	247, 314, 315, 445, 475, 496, 543
BseNI	ACTGG	5 cut(s)	114, 176, 187, 490, 554
BseRI	GAGGAG	3 cut(s)	425, 519, 604
BseSI	GKGCMC	1 cut(s)	241
BseXI	GCAGC	5 cut(s)	51, 290, 306, 381, 413
BseYI	CCCAGC	1 cut(s)	35
Bsh1236I	CGCG	2 cut(s)	335, 474
BshFI	GGCC	6 cut(s)	68, 239, 362, 500, 535, 547
BshNI	GGYRCC	1 cut(s)	390
BsiHKCI	CYCGRG	1 cut(s)	428
BsiSI	CCGG	1 cut(s)	397
BslFI	GGGAC	2 cut(s)	202, 411
BslI	CCNNNNNNNGG	7 cut(s)	247, 314, 315, 445, 475, 496, 543
BsmAI	GTCTC	1 cut(s)	162
BsmFI	GGGAC	2 cut(s)	202, 411
BsnI	GGCC	6 cut(s)	68, 239, 362, 500, 535, 547
BsoBI	CYCGRG	1 cut(s)	428
Bsp120I	GGGCCC	1 cut(s)	237
Bsp1286I	GDGCHC	1 cut(s)	241
Bsp143I	GATC	2 cut(s)	268, 288
BspACI	CCGC	6 cut(s)	212, 234, 329, 333, 350, 472
BspANI	GGCC	6 cut(s)	68, 239, 362, 500, 535, 547
BspFNI	CGCG	2 cut(s)	335, 474
BspLI	GGNNCC	3 cut(s)	238, 239, 392
BspPI	GGATC	2 cut(s)	276, 283
BspT107I	GGYRCC	1 cut(s)	390
BsrI	ACTGG	5 cut(s)	114, 176, 187, 490, 554
BssECI	CCNNGG	5 cut(s)	63, 363, 429, 495, 542
BssMI	GATC	2 cut(s)	268, 288
BssNI	GRCGYC	2 cut(s)	391, 424
BssT1I	CCWWGG	3 cut(s)	63, 495, 542
Bst2UI	CCWGG	2 cut(s)	248, 364
Bst4CI	ACNGT	2 cut(s)	104, 110
Bst6I	CTCTTC	3 cut(s)	155, 518, 524
BstACI	GRCGYC	2 cut(s)	391, 424
BstC8I	GCNNGC	2 cut(s)	333, 350
BstENI	CCTNNNNNAGG	1 cut(s)	473
BstFNI	CGCG	2 cut(s)	335, 474
BstH2I	RGCGCY	2 cut(s)	45, 394
BstHHI	GCGC	3 cut(s)	44, 337, 393
BstKTI	GATC	2 cut(s)	271, 291
BstMAI	GTCTC	1 cut(s)	162
BstMBI	GATC	2 cut(s)	268, 288
BstMWI	GCNNNNNNNGC	2 cut(s)	328, 421
BstNI	CCWGG	2 cut(s)	248, 364
BstSCI	CCNGG	3 cut(s)	246, 362, 396
BstSLI	GKGCMC	1 cut(s)	241
BstUI	CGCG	2 cut(s)	335, 474
BstV1I	GCAGC	5 cut(s)	51, 290, 306, 381, 413
BstX2I	RGATCY	1 cut(s)	288
BstYI	RGATCY	1 cut(s)	288
BsuRI	GGCC	6 cut(s)	68, 239, 362, 500, 535, 547
BtrI	CACGTC	1 cut(s)	244
Cac8I	GCNNGC	2 cut(s)	333, 350
CfoI	GCGC	3 cut(s)	44, 337, 393
Cfr13I	GGNCC	3 cut(s)	237, 238, 534
CseI	GACGC	2 cut(s)	386, 413
Csp6I	GTAC	9 cut(s)	75, 87, 111, 117, 190, 262, 466, 557, 591
CviAII	CATG	2 cut(s)	226, 416
CviQI	GTAC	9 cut(s)	75, 87, 111, 117, 190, 262, 466, 557, 591
DinI	GGCGCC	1 cut(s)	392
DpnI	GATC	2 cut(s)	270, 290
DpnII	GATC	2 cut(s)	268, 288
DrdI	GACNNNNNNGTC	1 cut(s)	616
DseDI	GACNNNNNNGTC	1 cut(s)	616
EaeI	YGGCCR	1 cut(s)	66
Eam1104I	CTCTTC	3 cut(s)	155, 518, 524
EarI	CTCTTC	3 cut(s)	155, 518, 524
Eco130I	CCWWGG	3 cut(s)	63, 495, 542
Eco147I	AGGCCT	1 cut(s)	362
Eco24I	GRGCYC	1 cut(s)	241
Eco88I	CYCGRG	1 cut(s)	428
EcoNI	CCTNNNNNAGG	1 cut(s)	473
EcoO109I	RGGNCCY	1 cut(s)	237
EcoRII	CCWGG	2 cut(s)	246, 362
EcoT14I	CCWWGG	3 cut(s)	63, 495, 542
EcoT38I	GRGCYC	1 cut(s)	241
EgeI	GGCGCC	1 cut(s)	392
EheI	GGCGCC	1 cut(s)	392
ErhI	CCWWGG	3 cut(s)	63, 495, 542
FaeI	CATG	2 cut(s)	229, 419
FaiI	YATR	6 cut(s)	150, 227, 408, 417, 516, 634
FaqI	GGGAC	2 cut(s)	202, 411
FatI	CATG	2 cut(s)	225, 415
FauI	CCCGC	4 cut(s)	227, 336, 340, 357
Fnu4HI	GCNGC	5 cut(s)	40, 304, 320, 370, 402
FriOI	GRGCYC	1 cut(s)	241
Fsp4HI	GCNGC	5 cut(s)	40, 304, 320, 370, 402
FspBI	CTAG	5 cut(s)	78, 141, 573, 588, 600
GlaI	GCGC	3 cut(s)	43, 336, 392
GluI	GCNGC	5 cut(s)	40, 304, 320, 370, 402
GsaI	CCCAGC	1 cut(s)	39
GsuI	CTGGAG	1 cut(s)	269
HaeII	RGCGCY	2 cut(s)	45, 394
HaeIII	GGCC	6 cut(s)	68, 239, 362, 500, 535, 547
HapII	CCGG	1 cut(s)	397
HgaI	GACGC	2 cut(s)	386, 413
HhaI	GCGC	3 cut(s)	44, 337, 393
Hin1I	GRCGYC	2 cut(s)	391, 424
Hin1II	CATG	2 cut(s)	229, 419
Hin6I	GCGC	3 cut(s)	42, 335, 391
HinP1I	GCGC	3 cut(s)	42, 335, 391
HpaII	CCGG	1 cut(s)	397
Hpy188I	TCNGA	1 cut(s)	278
Hpy188III	TCNNGA	2 cut(s)	428, 482
HpyAV	CCTTC	4 cut(s)	190, 230, 266, 319
HpyCH4III	ACNGT	2 cut(s)	104, 110
HpyCH4IV	ACGT	1 cut(s)	243
HpyCH4V	TGCA	1 cut(s)	623
HpyF10VI	GCNNNNNNNGC	2 cut(s)	328, 421
HpySE526I	ACGT	1 cut(s)	243
Hsp92I	GRCGYC	2 cut(s)	391, 424
Hsp92II	CATG	2 cut(s)	229, 419
HspAI	GCGC	3 cut(s)	42, 335, 391
KasI	GGCGCC	1 cut(s)	390
Kzo9I	GATC	2 cut(s)	268, 288
LmnI	GCTCC	2 cut(s)	25, 412
Lsp1109I	GCAGC	5 cut(s)	51, 290, 306, 381, 413
MaeI	CTAG	5 cut(s)	78, 141, 573, 588, 600
MaeII	ACGT	1 cut(s)	243
MaeIII	GTNAC	2 cut(s)	104, 197
MalI	GATC	2 cut(s)	270, 290
MboI	GATC	2 cut(s)	268, 288
MboII	GAAGA	4 cut(s)	172, 304, 535, 541
MflI	RGATCY	1 cut(s)	288
MhlI	GDGCHC	1 cut(s)	241
MlsI	TGGCCA	1 cut(s)	68
MluNI	TGGCCA	1 cut(s)	68
Mly113I	GGCGCC	1 cut(s)	391
MmeI	TCCRAC	1 cut(s)	47
Mox20I	TGGCCA	1 cut(s)	68
MroXI	GAANNNNTTC	1 cut(s)	179
MscI	TGGCCA	1 cut(s)	68
Msp20I	TGGCCA	1 cut(s)	68
MspA1I	CMGCKG	2 cut(s)	214, 303
MspI	CCGG	1 cut(s)	397
MspR9I	CCNGG	3 cut(s)	248, 364, 398
MvaI	CCWGG	2 cut(s)	248, 364
MvnI	CGCG	2 cut(s)	335, 474
MwoI	GCNNNNNNNGC	2 cut(s)	328, 421
NarI	GGCGCC	1 cut(s)	391
NciI	CCSGG	1 cut(s)	398
NdeII	GATC	2 cut(s)	268, 288
NlaIII	CATG	2 cut(s)	229, 419
NlaIV	GGNNCC	3 cut(s)	238, 239, 392
PceI	AGGCCT	1 cut(s)	362
PcsI	WCGNNNNNNNCGW	1 cut(s)	614
PdmI	GAANNNNTTC	1 cut(s)	179
PflMI	CCANNNNNTGG	1 cut(s)	247
PfoI	TCCNGGA	1 cut(s)	246
PkrI	GCNGC	5 cut(s)	41, 305, 321, 371, 403
PluTI	GGCGCC	1 cut(s)	394
Psp6I	CCWGG	2 cut(s)	246, 362
PspFI	CCCAGC	1 cut(s)	35
PspGI	CCWGG	2 cut(s)	246, 362
PspN4I	GGNNCC	3 cut(s)	238, 239, 392
PspOMI	GGGCCC	1 cut(s)	237
PspPI	GGNCC	3 cut(s)	237, 238, 534
PsuI	RGATCY	1 cut(s)	288
PvuII	CAGCTG	1 cut(s)	303
RsaI	GTAC	9 cut(s)	76, 88, 112, 118, 191, 263, 467, 558, 592
RsaNI	GTAC	9 cut(s)	75, 87, 111, 117, 190, 262, 466, 557, 591
SatI	GCNGC	5 cut(s)	40, 304, 320, 370, 402
Sau3AI	GATC	2 cut(s)	268, 288
Sau96I	GGNCC	3 cut(s)	237, 238, 534
ScaI	AGTACT	2 cut(s)	76, 118
ScrFI	CCNGG	3 cut(s)	248, 364, 398
SduI	GDGCHC	1 cut(s)	241
SfoI	GGCGCC	1 cut(s)	392
SpeI	ACTAGT	4 cut(s)	77, 572, 587, 599
SseBI	AGGCCT	1 cut(s)	362
SsiI	CCGC	6 cut(s)	212, 234, 329, 333, 350, 472
SspDI	GGCGCC	1 cut(s)	390
SspMI	CTAG	5 cut(s)	78, 141, 573, 588, 600
StuI	AGGCCT	1 cut(s)	362
StyD4I	CCNGG	3 cut(s)	246, 362, 396
StyI	CCWWGG	3 cut(s)	63, 495, 542
TaaI	ACNGT	2 cut(s)	104, 110
TaiI	ACGT	1 cut(s)	246
TaqI	TCGA	1 cut(s)	355
TatI	WGTACW	2 cut(s)	74, 116
TseI	GCWGC	5 cut(s)	39, 303, 319, 369, 401
TspGWI	ACGGA	1 cut(s)	185
Van91I	CCANNNNNTGG	1 cut(s)	247
XagI	CCTNNNNNAGG	1 cut(s)	473
XmnI	GAANNNNTTC	1 cut(s)	179
XspI	CTAG	5 cut(s)	78, 141, 573, 588, 600
ZrmI	AGTACT	2 cut(s)	76, 118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.