Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012719

Physical Location & Seq

Genomic Coordinates Reverse (-)

10454388 .. 10455681

Gene Structure 1294 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G28490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGATTTGATCTCTCACCAACCAAACAAGAACCCTAATTCCTCAACACAACTAACACCACCTTCCTCAAGCCGGTACGAGAACCAAAAACGCCGTGACTGGAACACTTTCTGTCAATACCTCCGGAACCACCGTCCTCCGCTCTCTCTCCCCTCGTGTAGCGGCGCACACGTGCTCGAGTTCCTCCGCTACCTTGACCAGTTCGGGAAAACAAAAGTTCACCACCAGAACTGTGCCTTCTTTGGCCTCCCTAACCCTCCTGCTCCTTGTCCTTGTCCTCTCCGGCAAGCTTGGGGCTCACTCGACGCTCTTATCGGCCGCCTCCGCGCCGCCTACGAGGAGAACGGTGGCCCACCTGAAGCTAACCCATTTGGCTCACGCGCCGTCAGGTTATTCCTCCGTGAAGTCAGAGACTTTCAAGCCAAAGCTCGAGGTGTTAGCTATGAGAAGAAGAGGAAGAGAGTCAACAGGCAGAAACCGCAAACGCAGCCGCCTCTACAGCTTCAGCAACAGCAACAGCAGCCACAACAAGGTCAGTCTATGATGGCTAATTACTCGGGTGCAACAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009639 GO:0009653 GO:0009826 GO:0009987 GO:0010114 GO:0010218 GO:0010467 GO:0016043 GO:0016049 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0032502 GO:0032774 GO:0032989 GO:0034641 GO:0034645 GO:0034654 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048589 GO:0048856 GO:0048869 GO:0050896 GO:0060560 GO:0071704 GO:0071840 GO:0090304 GO:0090698 GO:0097659 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF640

Protein Analysis

190

Amino Acids

21.65

Weight (kDa)

10.08

Isoelectric Point (pI)

60.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ALOG_dom	PF04852	14 - 138	3.7e-66	ALOG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012719)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04510 AT5G28490
fragaria_vesca	FvH4_6g01940
malus_domestica	MD04G1229700.v1.1
prunus_persica	Prupe.6G349800_v2.0.a1
pyrus_communis	pycom04g20350 pycom12g22620 pycom12g22670
rosa_chinensis	RchiOBHm_Chr3g0449731
rosa_laevigata	RLG00000025801
rosa_multiflora	Rmu_sc0000610.1_g000016
rosa_roxburghii	Rroxscaffold_6G00427600
rosa_rugosa	Rorug02G0622800
rosa_samantha	Rh3AG021200 Rh3BG021900 Rh3CG020500 Rh3DG021700
rosa_wichuraiana	Rw3G001750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	142
AccII	CGCG	2 cut(s)	327, 381
AccIII	TCCGGA	1 cut(s)	123
AciI	CCGC	8 cut(s)	140, 162, 187, 319, 325, 330, 479, 491
AcoI	YGGCCR	1 cut(s)	316
AcuI	CTGAAG	2 cut(s)	378, 488
AcvI	CACGTG	1 cut(s)	172
AfaI	GTAC	1 cut(s)	77
AfiI	CCNNNNNNNGG	2 cut(s)	72, 530
AflIII	ACRYGT	1 cut(s)	169
AgsI	TTSAA	1 cut(s)	419
AloI	GAACNNNNNNTCC	2 cut(s)	23, 55
AluBI	AGCT	5 cut(s)	290, 362, 428, 441, 502
AluI	AGCT	5 cut(s)	290, 362, 428, 441, 502
Alw21I	GWGCWC	1 cut(s)	177
Alw26I	GTCTC	1 cut(s)	405
Ama87I	CYCGRG	3 cut(s)	176, 429, 556
Aor13HI	TCCGGA	1 cut(s)	123
AoxI	GGCC	3 cut(s)	244, 316, 349
ApeKI	GCWGC	2 cut(s)	487, 520
Asp700I	GAANNNNTTC	1 cut(s)	107
AspLEI	GCGC	3 cut(s)	167, 329, 383
AspS9I	GGNCC	1 cut(s)	350
AsuHPI	GGTGA	2 cut(s)	8, 212
AvaI	CYCGRG	3 cut(s)	176, 429, 556
BanII	GRGCYC	1 cut(s)	299
BauI	CACGAG	1 cut(s)	154
BbrPI	CACGTG	1 cut(s)	172
Bbv12I	GWGCWC	1 cut(s)	177
BbvI	GCAGC	2 cut(s)	499, 532
BccI	CCATC	1 cut(s)	538
BceAI	ACGGC	2 cut(s)	78, 368
BcoDI	GTCTC	1 cut(s)	405
BfmI	CTRYAG	1 cut(s)	497
BisI	GCNGC	6 cut(s)	163, 319, 330, 488, 491, 521
BlsI	GCNGC	6 cut(s)	164, 320, 331, 489, 492, 522
BmeT110I	CYCGRG	3 cut(s)	176, 429, 556
BmgT120I	GGNCC	1 cut(s)	350
BmiI	GGNNCC	1 cut(s)	128
BpuEI	CTTGAG	1 cut(s)	52
BsaAI	YACGTR	1 cut(s)	172
BsaWI	WCCGGW	1 cut(s)	123
Bsc4I	CCNNNNNNNGG	2 cut(s)	72, 530
Bse118I	RCCGGY	1 cut(s)	72
Bse1I	ACTGG	2 cut(s)	104, 199
BseAI	TCCGGA	1 cut(s)	123
BseLI	CCNNNNNNNGG	2 cut(s)	72, 530
BseNI	ACTGG	2 cut(s)	104, 199
BseRI	GAGGAG	1 cut(s)	353
BseX3I	CGGCCG	1 cut(s)	316
BseXI	GCAGC	2 cut(s)	499, 532
Bsh1236I	CGCG	2 cut(s)	327, 381
Bsh1285I	CGRYCG	1 cut(s)	319
BshFI	GGCC	3 cut(s)	246, 318, 351
BsiEI	CGRYCG	1 cut(s)	319
BsiHKAI	GWGCWC	1 cut(s)	177
BsiHKCI	CYCGRG	3 cut(s)	176, 429, 556
BsiSI	CCGG	3 cut(s)	73, 124, 283
BslI	CCNNNNNNNGG	2 cut(s)	72, 530
BsmAI	GTCTC	1 cut(s)	405
BsnI	GGCC	3 cut(s)	246, 318, 351
BsoBI	CYCGRG	3 cut(s)	176, 429, 556
Bsp1286I	GDGCHC	2 cut(s)	177, 299
Bsp13I	TCCGGA	1 cut(s)	123
Bsp143I	GATC	1 cut(s)	9
BspACI	CCGC	8 cut(s)	140, 162, 187, 319, 325, 330, 479, 491
BspANI	GGCC	3 cut(s)	246, 318, 351
BspEI	TCCGGA	1 cut(s)	123
BspFNI	CGCG	2 cut(s)	327, 381
BspLI	GGNNCC	1 cut(s)	128
BsrBI	CCGCTC	1 cut(s)	142
BsrFI	RCCGGY	1 cut(s)	72
BsrI	ACTGG	2 cut(s)	104, 199
BssAI	RCCGGY	1 cut(s)	72
BssMI	GATC	1 cut(s)	9
BssSI	CACGAG	1 cut(s)	154
Bst2BI	CACGAG	1 cut(s)	154
Bst4CI	ACNGT	4 cut(s)	134, 233, 347, 568
Bst6I	CTCTTC	2 cut(s)	446, 452
BstBAI	YACGTR	1 cut(s)	172
BstC8I	GCNNGC	1 cut(s)	288
BstFNI	CGCG	2 cut(s)	327, 381
BstHHI	GCGC	3 cut(s)	167, 329, 383
BstKTI	GATC	1 cut(s)	12
BstMAI	GTCTC	1 cut(s)	405
BstMBI	GATC	1 cut(s)	9
BstMCI	CGRYCG	1 cut(s)	319
BstMWI	GCNNNNNNNGC	5 cut(s)	324, 478, 487, 499, 520
BstSFI	CTRYAG	1 cut(s)	497
BstUI	CGCG	2 cut(s)	327, 381
BstV1I	GCAGC	2 cut(s)	499, 532
BstZI	CGGCCG	1 cut(s)	316
BsuRI	GGCC	3 cut(s)	246, 318, 351
Cac8I	GCNNGC	1 cut(s)	288
CfoI	GCGC	3 cut(s)	167, 329, 383
Cfr10I	RCCGGY	1 cut(s)	72
Cfr13I	GGNCC	1 cut(s)	350
CseI	GACGC	1 cut(s)	314
Csp6I	GTAC	1 cut(s)	76
CviQI	GTAC	1 cut(s)	76
DpnI	GATC	1 cut(s)	11
DpnII	GATC	1 cut(s)	9
EaeI	YGGCCR	1 cut(s)	316
EagI	CGGCCG	1 cut(s)	316
Eam1104I	CTCTTC	2 cut(s)	446, 452
EarI	CTCTTC	2 cut(s)	446, 452
EclXI	CGGCCG	1 cut(s)	316
Eco24I	GRGCYC	1 cut(s)	299
Eco52I	CGGCCG	1 cut(s)	316
Eco57I	CTGAAG	2 cut(s)	378, 488
Eco72I	CACGTG	1 cut(s)	172
Eco88I	CYCGRG	3 cut(s)	176, 429, 556
EcoT38I	GRGCYC	1 cut(s)	299
FaiI	YATR	3 cut(s)	444, 542, 571
Fnu4HI	GCNGC	6 cut(s)	163, 319, 330, 488, 491, 521
FriOI	GRGCYC	1 cut(s)	299
Fsp4HI	GCNGC	6 cut(s)	163, 319, 330, 488, 491, 521
GlaI	GCGC	3 cut(s)	166, 328, 382
GluI	GCNGC	6 cut(s)	163, 319, 330, 488, 491, 521
HaeIII	GGCC	3 cut(s)	246, 318, 351
HapII	CCGG	3 cut(s)	73, 124, 283
HgaI	GACGC	1 cut(s)	314
HhaI	GCGC	3 cut(s)	167, 329, 383
Hin6I	GCGC	3 cut(s)	165, 327, 381
HinP1I	GCGC	3 cut(s)	165, 327, 381
HincII	GTYRAC	1 cut(s)	466
HindII	GTYRAC	1 cut(s)	466
HindIII	AAGCTT	1 cut(s)	288
HinfI	GANTC	1 cut(s)	462
HpaII	CCGG	3 cut(s)	73, 124, 283
HphI	GGTGA	2 cut(s)	8, 212
Hpy166II	GTNNAC	2 cut(s)	220, 466
Hpy188I	TCNGA	1 cut(s)	410
Hpy188III	TCNNGA	2 cut(s)	124, 205
Hpy8I	GTNNAC	2 cut(s)	220, 466
Hpy99I	CGWCG	1 cut(s)	308
HpyAV	CCTTC	2 cut(s)	72, 247
HpyCH4III	ACNGT	4 cut(s)	134, 233, 347, 568
HpyCH4IV	ACGT	1 cut(s)	171
HpyCH4V	TGCA	1 cut(s)	563
HpyF10VI	GCNNNNNNNGC	5 cut(s)	324, 478, 487, 499, 520
HpySE526I	ACGT	1 cut(s)	171
HspAI	GCGC	3 cut(s)	165, 327, 381
Kpn2I	TCCGGA	1 cut(s)	123
Kzo9I	GATC	1 cut(s)	9
LmnI	GCTCC	1 cut(s)	268
Lsp1109I	GCAGC	2 cut(s)	499, 532
MaeII	ACGT	1 cut(s)	171
MaeIII	GTNAC	1 cut(s)	95
MalI	GATC	1 cut(s)	11
MbiI	CCGCTC	1 cut(s)	142
MboI	GATC	1 cut(s)	9
MboII	GAAGA	3 cut(s)	460, 463, 469
MhlI	GDGCHC	2 cut(s)	177, 299
MluCI	AATT	2 cut(s)	37, 550
MlyI	GAGTC	1 cut(s)	471
MroI	TCCGGA	1 cut(s)	123
MroXI	GAANNNNTTC	1 cut(s)	107
MspI	CCGG	3 cut(s)	73, 124, 283
MvnI	CGCG	2 cut(s)	327, 381
MwoI	GCNNNNNNNGC	5 cut(s)	324, 478, 487, 499, 520
NdeII	GATC	1 cut(s)	9
NlaIV	GGNNCC	1 cut(s)	128
NmuCI	GTSAC	1 cut(s)	95
PaeR7I	CTCGAG	2 cut(s)	176, 429
PdmI	GAANNNNTTC	1 cut(s)	107
PkrI	GCNGC	6 cut(s)	164, 320, 331, 489, 492, 522
PleI	GAGTC	1 cut(s)	470
PmaCI	CACGTG	1 cut(s)	172
PmlI	CACGTG	1 cut(s)	172
PpsI	GAGTC	1 cut(s)	470
Ppu21I	YACGTR	1 cut(s)	172
PspCI	CACGTG	1 cut(s)	172
PspN4I	GGNNCC	1 cut(s)	128
PspPI	GGNCC	1 cut(s)	350
PspXI	VCTCGAGB	2 cut(s)	176, 429
RsaI	GTAC	1 cut(s)	77
RsaNI	GTAC	1 cut(s)	76
SatI	GCNGC	6 cut(s)	163, 319, 330, 488, 491, 521
Sau3AI	GATC	1 cut(s)	9
Sau96I	GGNCC	1 cut(s)	350
SchI	GAGTC	1 cut(s)	471
SduI	GDGCHC	2 cut(s)	177, 299
SfcI	CTRYAG	1 cut(s)	497
Sfr274I	CTCGAG	2 cut(s)	176, 429
SlaI	CTCGAG	2 cut(s)	176, 429
SmlI	CTYRAG	3 cut(s)	67, 176, 429
SmoI	CTYRAG	3 cut(s)	67, 176, 429
Sse9I	AATT	2 cut(s)	37, 550
SsiI	CCGC	8 cut(s)	140, 162, 187, 319, 325, 330, 479, 491
TaaI	ACNGT	4 cut(s)	134, 233, 347, 568
TaiI	ACGT	1 cut(s)	174
TaqI	TCGA	3 cut(s)	177, 303, 430
TasI	AATT	2 cut(s)	37, 550
TauI	GCSGC	4 cut(s)	165, 321, 332, 493
TseFI	GTSAC	1 cut(s)	95
TseI	GCWGC	2 cut(s)	487, 520
Tsp45I	GTSAC	1 cut(s)	95
TspGWI	ACGGA	1 cut(s)	389
XhoI	CTCGAG	2 cut(s)	176, 429
XmnI	GAANNNNTTC	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.