Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0012719

Physical Location & Seq

Genomic Coordinates Reverse (-)

1435710 .. 1437758

Gene Structure 2049 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ41709

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGTGTAGCGGGGCCCACGTCCTGGAGTTCCTCCGGTACTTGGATCAGTTCGGAAAGACCAAGATCCACAACCACAGCTGCCCCTTCTTCGGGCTGCCAAACCCACCCGCGCCCTGCCCCTGCCCGCTTCGACAGGCCTGGGGCAGCTTGGACGCTCTCATTGGGCGCCTCCGGGCGGCCTATGAGGAGCATGGAGGGCGGCCCGAGGCGAACCCTTTTGGGGCAAGAGCTGTGAGGCTGTACCTCCGCGAGGTTCGTGATTTCCAGTCCAAGGCGAGAGGAGTGAGCTATGACAAGAAGAGGAAGAGGCCCAAGCCAAGGCCAACACCAGTACCAACACCAACAACTAGTACCACTACAACTAGTACCACCACTAGTGGCACGACCTCCTCGTCTGCAACTCTCTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009639 GO:0009653 GO:0009826 GO:0009987 GO:0010114 GO:0010218 GO:0010467 GO:0016043 GO:0016049 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0032502 GO:0032774 GO:0032989 GO:0034641 GO:0034645 GO:0034654 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048589 GO:0048856 GO:0048869 GO:0050896 GO:0060560 GO:0071704 GO:0071840 GO:0090304 GO:0090698 GO:0097659 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF640

Protein Analysis

136

Amino Acids

14.93

Weight (kDa)

10.1

Isoelectric Point (pI)

47.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ALOG_dom	PF04852	2 - 87	2.5e-46	ALOG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0012719)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04510 AT5G28490
fragaria_vesca	FvH4_6g01940
malus_domestica	MD04G1229700.v1.1
prunus_persica	Prupe.6G349800_v2.0.a1
pyrus_communis	pycom04g20350 pycom12g22620 pycom12g22670
rosa_chinensis	RchiOBHm_Chr3g0449731
rosa_laevigata	RLG00000025801
rosa_multiflora	Rmu_sc0000610.1_g000016
rosa_roxburghii	Rroxscaffold_6G00427600
rosa_rugosa	Rorug02G0622800
rosa_samantha	Rh3AG021200 Rh3BG021900 Rh3CG020500 Rh3DG021700
rosa_wichuraiana	Rw3G001750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	391
AccB1I	GGYRCC	1 cut(s)	165
AccB7I	CCANNNNNTGG	1 cut(s)	22
AccII	CGCG	2 cut(s)	110, 249
AciI	CCGC	6 cut(s)	9, 108, 125, 176, 199, 247
AclWI	GGATC	2 cut(s)	51, 58
AcyI	GRCGYC	1 cut(s)	166
AfaI	GTAC	5 cut(s)	38, 242, 333, 352, 367
AfiI	CCNNNNNNNGG	9 cut(s)	22, 40, 89, 90, 175, 220, 250, 271, 318
AhlI	ACTAGT	3 cut(s)	347, 362, 374
AjiI	CACGTC	1 cut(s)	19
AjnI	CCWGG	2 cut(s)	21, 137
AluBI	AGCT	4 cut(s)	78, 147, 230, 288
AluI	AGCT	4 cut(s)	78, 147, 230, 288
AlwI	GGATC	2 cut(s)	51, 58
Ama87I	CYCGRG	1 cut(s)	203
AoxI	GGCC	6 cut(s)	12, 135, 177, 200, 308, 320
ApaI	GGGCCC	1 cut(s)	16
ApeKI	GCWGC	3 cut(s)	78, 94, 144
AspLEI	GCGC	2 cut(s)	112, 168
AspS9I	GGNCC	4 cut(s)	12, 13, 201, 309
AsuC2I	CCSGG	1 cut(s)	173
AvaI	CYCGRG	1 cut(s)	203
BaeGI	GKGCMC	1 cut(s)	16
BaeI	ACNNNNGTAYC	2 cut(s)	315, 348
BanI	GGYRCC	1 cut(s)	165
BanII	GRGCYC	1 cut(s)	16
BbvI	GCAGC	3 cut(s)	65, 81, 156
BciT130I	CCWGG	2 cut(s)	23, 139
BcnI	CCSGG	1 cut(s)	173
BcuI	ACTAGT	3 cut(s)	347, 362, 374
BfaI	CTAG	3 cut(s)	348, 363, 375
BfoI	RGCGCY	1 cut(s)	169
BisI	GCNGC	5 cut(s)	79, 95, 145, 177, 200
BlsI	GCNGC	5 cut(s)	80, 96, 146, 178, 201
Bme1390I	CCNGG	3 cut(s)	23, 139, 173
BmeT110I	CYCGRG	1 cut(s)	203
BmgBI	CACGTC	1 cut(s)	19
BmgT120I	GGNCC	4 cut(s)	12, 13, 201, 309
BmiI	GGNNCC	3 cut(s)	13, 14, 167
BmrFI	CCNGG	3 cut(s)	23, 139, 173
BpmI	CTGGAG	1 cut(s)	44
BpuMI	CCSGG	1 cut(s)	173
BsaHI	GRCGYC	1 cut(s)	166
BsaJI	CCNNGG	4 cut(s)	138, 204, 270, 317
BsaWI	WCCGGW	1 cut(s)	33
Bsc4I	CCNNNNNNNGG	9 cut(s)	22, 40, 89, 90, 175, 220, 250, 271, 318
Bse1I	ACTGG	2 cut(s)	265, 329
BseBI	CCWGG	2 cut(s)	23, 139
BseDI	CCNNGG	4 cut(s)	138, 204, 270, 317
BseLI	CCNNNNNNNGG	9 cut(s)	22, 40, 89, 90, 175, 220, 250, 271, 318
BseNI	ACTGG	2 cut(s)	265, 329
BseRI	GAGGAG	3 cut(s)	200, 294, 379
BseSI	GKGCMC	1 cut(s)	16
BseXI	GCAGC	3 cut(s)	65, 81, 156
Bsh1236I	CGCG	2 cut(s)	110, 249
BshFI	GGCC	6 cut(s)	14, 137, 179, 202, 310, 322
BshNI	GGYRCC	1 cut(s)	165
BsiHKCI	CYCGRG	1 cut(s)	203
BsiSI	CCGG	2 cut(s)	34, 172
BslI	CCNNNNNNNGG	9 cut(s)	22, 40, 89, 90, 175, 220, 250, 271, 318
BsnI	GGCC	6 cut(s)	14, 137, 179, 202, 310, 322
BsoBI	CYCGRG	1 cut(s)	203
Bsp120I	GGGCCC	1 cut(s)	12
Bsp1286I	GDGCHC	1 cut(s)	16
Bsp143I	GATC	2 cut(s)	43, 63
BspACI	CCGC	6 cut(s)	9, 108, 125, 176, 199, 247
BspANI	GGCC	6 cut(s)	14, 137, 179, 202, 310, 322
BspFNI	CGCG	2 cut(s)	110, 249
BspLI	GGNNCC	3 cut(s)	13, 14, 167
BspPI	GGATC	2 cut(s)	51, 58
BspT107I	GGYRCC	1 cut(s)	165
BsrI	ACTGG	2 cut(s)	265, 329
BssECI	CCNNGG	4 cut(s)	138, 204, 270, 317
BssMI	GATC	2 cut(s)	43, 63
BssNI	GRCGYC	1 cut(s)	166
BssT1I	CCWWGG	2 cut(s)	270, 317
Bst2UI	CCWGG	2 cut(s)	23, 139
Bst6I	CTCTTC	2 cut(s)	293, 299
BstACI	GRCGYC	1 cut(s)	166
BstC8I	GCNNGC	1 cut(s)	125
BstENI	CCTNNNNNAGG	1 cut(s)	248
BstFNI	CGCG	2 cut(s)	110, 249
BstH2I	RGCGCY	1 cut(s)	169
BstHHI	GCGC	2 cut(s)	112, 168
BstKTI	GATC	2 cut(s)	46, 66
BstMBI	GATC	2 cut(s)	43, 63
BstMWI	GCNNNNNNNGC	1 cut(s)	196
BstNI	CCWGG	2 cut(s)	23, 139
BstSCI	CCNGG	3 cut(s)	21, 137, 171
BstSLI	GKGCMC	1 cut(s)	16
BstUI	CGCG	2 cut(s)	110, 249
BstV1I	GCAGC	3 cut(s)	65, 81, 156
BstX2I	RGATCY	1 cut(s)	63
BstYI	RGATCY	1 cut(s)	63
BsuRI	GGCC	6 cut(s)	14, 137, 179, 202, 310, 322
BtrI	CACGTC	1 cut(s)	19
Cac8I	GCNNGC	1 cut(s)	125
CfoI	GCGC	2 cut(s)	112, 168
Cfr13I	GGNCC	4 cut(s)	12, 13, 201, 309
CseI	GACGC	1 cut(s)	161
Csp6I	GTAC	5 cut(s)	37, 241, 332, 351, 366
CviAII	CATG	1 cut(s)	191
CviQI	GTAC	5 cut(s)	37, 241, 332, 351, 366
DinI	GGCGCC	1 cut(s)	167
DpnI	GATC	2 cut(s)	45, 65
DpnII	GATC	2 cut(s)	43, 63
DrdI	GACNNNNNNGTC	1 cut(s)	391
DseDI	GACNNNNNNGTC	1 cut(s)	391
Eam1104I	CTCTTC	2 cut(s)	293, 299
EarI	CTCTTC	2 cut(s)	293, 299
Eco130I	CCWWGG	2 cut(s)	270, 317
Eco147I	AGGCCT	1 cut(s)	137
Eco24I	GRGCYC	1 cut(s)	16
Eco88I	CYCGRG	1 cut(s)	203
EcoNI	CCTNNNNNAGG	1 cut(s)	248
EcoO109I	RGGNCCY	1 cut(s)	12
EcoRII	CCWGG	2 cut(s)	21, 137
EcoT14I	CCWWGG	2 cut(s)	270, 317
EcoT38I	GRGCYC	1 cut(s)	16
EgeI	GGCGCC	1 cut(s)	167
EheI	GGCGCC	1 cut(s)	167
ErhI	CCWWGG	2 cut(s)	270, 317
FaeI	CATG	1 cut(s)	194
FaiI	YATR	4 cut(s)	183, 192, 291, 409
FatI	CATG	1 cut(s)	190
FauI	CCCGC	3 cut(s)	2, 115, 132
Fnu4HI	GCNGC	5 cut(s)	79, 95, 145, 177, 200
FriOI	GRGCYC	1 cut(s)	16
Fsp4HI	GCNGC	5 cut(s)	79, 95, 145, 177, 200
FspBI	CTAG	3 cut(s)	348, 363, 375
GlaI	GCGC	2 cut(s)	111, 167
GluI	GCNGC	5 cut(s)	79, 95, 145, 177, 200
GsuI	CTGGAG	1 cut(s)	44
HaeII	RGCGCY	1 cut(s)	169
HaeIII	GGCC	6 cut(s)	14, 137, 179, 202, 310, 322
HapII	CCGG	2 cut(s)	34, 172
HgaI	GACGC	1 cut(s)	161
HhaI	GCGC	2 cut(s)	112, 168
Hin1I	GRCGYC	1 cut(s)	166
Hin1II	CATG	1 cut(s)	194
Hin6I	GCGC	2 cut(s)	110, 166
HinP1I	GCGC	2 cut(s)	110, 166
HpaII	CCGG	2 cut(s)	34, 172
Hpy188I	TCNGA	1 cut(s)	53
Hpy188III	TCNNGA	1 cut(s)	257
HpyAV	CCTTC	1 cut(s)	94
HpyCH4IV	ACGT	1 cut(s)	18
HpyCH4V	TGCA	1 cut(s)	398
HpyF10VI	GCNNNNNNNGC	1 cut(s)	196
HpySE526I	ACGT	1 cut(s)	18
Hsp92I	GRCGYC	1 cut(s)	166
Hsp92II	CATG	1 cut(s)	194
HspAI	GCGC	2 cut(s)	110, 166
KasI	GGCGCC	1 cut(s)	165
Kzo9I	GATC	2 cut(s)	43, 63
LmnI	GCTCC	1 cut(s)	187
Lsp1109I	GCAGC	3 cut(s)	65, 81, 156
MaeI	CTAG	3 cut(s)	348, 363, 375
MaeII	ACGT	1 cut(s)	18
MalI	GATC	2 cut(s)	45, 65
MboI	GATC	2 cut(s)	43, 63
MboII	GAAGA	3 cut(s)	79, 310, 316
MflI	RGATCY	1 cut(s)	63
MhlI	GDGCHC	1 cut(s)	16
Mly113I	GGCGCC	1 cut(s)	166
MspA1I	CMGCKG	1 cut(s)	78
MspI	CCGG	2 cut(s)	34, 172
MspR9I	CCNGG	3 cut(s)	23, 139, 173
MvaI	CCWGG	2 cut(s)	23, 139
MvnI	CGCG	2 cut(s)	110, 249
MwoI	GCNNNNNNNGC	1 cut(s)	196
NarI	GGCGCC	1 cut(s)	166
NciI	CCSGG	1 cut(s)	173
NdeII	GATC	2 cut(s)	43, 63
NlaIII	CATG	1 cut(s)	194
NlaIV	GGNNCC	3 cut(s)	13, 14, 167
PceI	AGGCCT	1 cut(s)	137
PcsI	WCGNNNNNNNCGW	1 cut(s)	389
PflMI	CCANNNNNTGG	1 cut(s)	22
PfoI	TCCNGGA	1 cut(s)	21
PkrI	GCNGC	5 cut(s)	80, 96, 146, 178, 201
PluTI	GGCGCC	1 cut(s)	169
Psp6I	CCWGG	2 cut(s)	21, 137
PspGI	CCWGG	2 cut(s)	21, 137
PspN4I	GGNNCC	3 cut(s)	13, 14, 167
PspOMI	GGGCCC	1 cut(s)	12
PspPI	GGNCC	4 cut(s)	12, 13, 201, 309
PsuI	RGATCY	1 cut(s)	63
PvuII	CAGCTG	1 cut(s)	78
RsaI	GTAC	5 cut(s)	38, 242, 333, 352, 367
RsaNI	GTAC	5 cut(s)	37, 241, 332, 351, 366
SatI	GCNGC	5 cut(s)	79, 95, 145, 177, 200
Sau3AI	GATC	2 cut(s)	43, 63
Sau96I	GGNCC	4 cut(s)	12, 13, 201, 309
ScrFI	CCNGG	3 cut(s)	23, 139, 173
SduI	GDGCHC	1 cut(s)	16
SetI	ASST	8 cut(s)	21, 80, 149, 232, 246, 255, 290, 389
SfoI	GGCGCC	1 cut(s)	167
SpeI	ACTAGT	3 cut(s)	347, 362, 374
SseBI	AGGCCT	1 cut(s)	137
SsiI	CCGC	6 cut(s)	9, 108, 125, 176, 199, 247
SspDI	GGCGCC	1 cut(s)	165
SspMI	CTAG	3 cut(s)	348, 363, 375
StuI	AGGCCT	1 cut(s)	137
StyD4I	CCNGG	3 cut(s)	21, 137, 171
StyI	CCWWGG	2 cut(s)	270, 317
TaiI	ACGT	1 cut(s)	21
TaqI	TCGA	1 cut(s)	130
TauI	GCSGC	2 cut(s)	179, 202
TseI	GCWGC	3 cut(s)	78, 94, 144
Van91I	CCANNNNNTGG	1 cut(s)	22
XagI	CCTNNNNNAGG	1 cut(s)	248
XspI	CTAG	3 cut(s)	348, 363, 375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.