Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0012719

Physical Location & Seq

Genomic Coordinates Reverse (-)

1104323 .. 1107707

Gene Structure 3385 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g01940.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGACTTGGTTTCTTCAGCTCCAGCCACCAATCCCAGCATCGCCTCTACCTTAGCCATTGGTACAGGGACACAGGGTACTAACGGTACTGTTCCTCCTAGCCGGTATGAGAACCAGAAGAGGAGAGACTGGAACACCTTCTGCCAGTACCTCCGGAACCACCGCCCTCCTTTGACCCTCCCCATGTGTAGCGGCGCTCACGTGCTGGAGTTCCTCCGCTACTTGGATCAGTTCGGCAAGACCAAGATCCACAACCACAACTGCCCTTACTTTGGGGTCCCAAACCCACCAGCGCCTTGCCCCTGCCCGCTTCGGCAAGCATGGGGCAGCTTGGATGCCCTCATTGGGCGCCTCCGGGCAGCCTATGAGGAGCATGGAGGCCGGCCTGAGGCTAACCCTTTTGGGGCAAGAGCAGTGAGGCTGTACCTCCGCGAGGTTCGTGATTTCCAGTCAAAGGCCAGAGGAGTGAGCTATGACAAGAAGAGGAAGAGGCCCAAGCCAAAGCCAACACCAACACCAACAACTAGTACTACTAGTGGTACTAGTACCAGCTCCTCTGCAACTCTACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009639 GO:0009653 GO:0009826 GO:0009987 GO:0010114 GO:0010218 GO:0010467 GO:0016043 GO:0016049 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0032502 GO:0032774 GO:0032989 GO:0034641 GO:0034645 GO:0034654 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048589 GO:0048856 GO:0048869 GO:0050896 GO:0060560 GO:0071704 GO:0071840 GO:0090304 GO:0090698 GO:0097659 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF640

Protein Analysis

191

Amino Acids

20.92

Weight (kDa)

10.03

Isoelectric Point (pI)

43.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ALOG_dom	PF04852	33 - 148	7.4e-65	ALOG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012719)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04510 AT5G28490
fragaria_vesca	FvH4_6g01940
malus_domestica	MD04G1229700.v1.1
prunus_persica	Prupe.6G349800_v2.0.a1
pyrus_communis	pycom04g20350 pycom12g22620 pycom12g22670
rosa_chinensis	RchiOBHm_Chr3g0449731
rosa_laevigata	RLG00000025801
rosa_multiflora	Rmu_sc0000610.1_g000016
rosa_roxburghii	Rroxscaffold_6G00427600
rosa_rugosa	Rorug02G0622800
rosa_samantha	Rh3AG021200 Rh3BG021900 Rh3CG020500 Rh3DG021700
rosa_wichuraiana	Rw3G001750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	348
AccII	CGCG	1 cut(s)	432
AccIII	TCCGGA	1 cut(s)	153
AciI	CCGC	5 cut(s)	163, 192, 217, 308, 430
AclWI	GGATC	2 cut(s)	234, 241
AcvI	CACGTG	1 cut(s)	202
AcyI	GRCGYC	1 cut(s)	349
AfaI	GTAC	8 cut(s)	64, 79, 88, 149, 425, 529, 541, 547
AfiI	CCNNNNNNNGG	7 cut(s)	223, 272, 345, 388, 403, 433, 454
AhlI	ACTAGT	3 cut(s)	524, 533, 542
AluBI	AGCT	4 cut(s)	20, 330, 471, 552
AluI	AGCT	4 cut(s)	20, 330, 471, 552
Alw26I	GTCTC	1 cut(s)	120
AlwI	GGATC	2 cut(s)	234, 241
Aor13HI	TCCGGA	1 cut(s)	153
AoxI	GGCC	4 cut(s)	379, 383, 456, 491
ApeKI	GCWGC	2 cut(s)	327, 359
Asp700I	GAANNNNTTC	1 cut(s)	137
AspLEI	GCGC	3 cut(s)	197, 295, 351
AspS9I	GGNCC	2 cut(s)	277, 492
AsuC2I	CCSGG	1 cut(s)	356
AvaII	GGWCC	1 cut(s)	277
AxyI	CCTNAGG	1 cut(s)	387
BanI	GGYRCC	1 cut(s)	348
BbrPI	CACGTG	1 cut(s)	202
BbvI	GCAGC	2 cut(s)	339, 371
BcnI	CCSGG	1 cut(s)	356
BcoDI	GTCTC	1 cut(s)	120
BcuI	ACTAGT	3 cut(s)	524, 533, 542
BfaI	CTAG	4 cut(s)	99, 525, 534, 543
BfoI	RGCGCY	3 cut(s)	198, 296, 352
BisI	GCNGC	3 cut(s)	193, 328, 360
BlsI	GCNGC	3 cut(s)	194, 329, 361
BmcAI	AGTACT	1 cut(s)	529
Bme1390I	CCNGG	1 cut(s)	356
Bme18I	GGWCC	1 cut(s)	277
BmgT120I	GGNCC	2 cut(s)	277, 492
BmiI	GGNNCC	4 cut(s)	158, 278, 279, 350
BmrFI	CCNGG	1 cut(s)	356
BmsI	GCATC	2 cut(s)	48, 325
BpmI	CTGGAG	2 cut(s)	6, 227
Bpu10I	CCTNAGC	1 cut(s)	52
BpuMI	CCSGG	1 cut(s)	356
BsaAI	YACGTR	1 cut(s)	202
BsaHI	GRCGYC	1 cut(s)	349
BsaWI	WCCGGW	1 cut(s)	153
BsaXI	ACNNNNNCTCC	2 cut(s)	79, 109
Bsc4I	CCNNNNNNNGG	7 cut(s)	223, 272, 345, 388, 403, 433, 454
Bse118I	RCCGGY	2 cut(s)	102, 381
Bse1I	ACTGG	3 cut(s)	134, 145, 448
Bse21I	CCTNAGG	1 cut(s)	387
BseAI	TCCGGA	1 cut(s)	153
BseGI	GGATG	1 cut(s)	340
BseLI	CCNNNNNNNGG	7 cut(s)	223, 272, 345, 388, 403, 433, 454
BseMII	CTCAG	1 cut(s)	378
BseNI	ACTGG	3 cut(s)	134, 145, 448
BseRI	GAGGAG	4 cut(s)	136, 383, 477, 544
BseXI	GCAGC	2 cut(s)	339, 371
BseYI	CCCAGC	1 cut(s)	35
Bsh1236I	CGCG	1 cut(s)	432
BshFI	GGCC	4 cut(s)	381, 385, 458, 493
BshNI	GGYRCC	1 cut(s)	348
BsiSI	CCGG	4 cut(s)	103, 154, 355, 382
BslFI	GGGAC	2 cut(s)	82, 263
BslI	CCNNNNNNNGG	7 cut(s)	223, 272, 345, 388, 403, 433, 454
BsmAI	GTCTC	1 cut(s)	120
BsmFI	GGGAC	2 cut(s)	82, 263
BsnI	GGCC	4 cut(s)	381, 385, 458, 493
Bsp13I	TCCGGA	1 cut(s)	153
Bsp143I	GATC	2 cut(s)	226, 246
BspACI	CCGC	5 cut(s)	163, 192, 217, 308, 430
BspANI	GGCC	4 cut(s)	381, 385, 458, 493
BspCNI	CTCAG	1 cut(s)	379
BspEI	TCCGGA	1 cut(s)	153
BspFNI	CGCG	1 cut(s)	432
BspLI	GGNNCC	4 cut(s)	158, 278, 279, 350
BspPI	GGATC	2 cut(s)	234, 241
BspT107I	GGYRCC	1 cut(s)	348
BsrFI	RCCGGY	2 cut(s)	102, 381
BsrI	ACTGG	3 cut(s)	134, 145, 448
BssAI	RCCGGY	2 cut(s)	102, 381
BssMI	GATC	2 cut(s)	226, 246
BssNI	GRCGYC	1 cut(s)	349
Bst4CI	ACNGT	2 cut(s)	86, 91
Bst6I	CTCTTC	3 cut(s)	113, 476, 482
BstACI	GRCGYC	1 cut(s)	349
BstBAI	YACGTR	1 cut(s)	202
BstC8I	GCNNGC	3 cut(s)	308, 318, 383
BstDEI	CTNAG	2 cut(s)	52, 387
BstENI	CCTNNNNNAGG	1 cut(s)	431
BstF5I	GGATG	1 cut(s)	340
BstFNI	CGCG	1 cut(s)	432
BstH2I	RGCGCY	3 cut(s)	198, 296, 352
BstHHI	GCGC	3 cut(s)	197, 295, 351
BstKTI	GATC	2 cut(s)	229, 249
BstMAI	GTCTC	1 cut(s)	120
BstMBI	GATC	2 cut(s)	226, 246
BstSCI	CCNGG	1 cut(s)	354
BstUI	CGCG	1 cut(s)	432
BstV1I	GCAGC	2 cut(s)	339, 371
BstX2I	RGATCY	1 cut(s)	246
BstYI	RGATCY	1 cut(s)	246
Bsu36I	CCTNAGG	1 cut(s)	387
BsuRI	GGCC	4 cut(s)	381, 385, 458, 493
BtgZI	GCGATG	1 cut(s)	25
BtsCI	GGATG	1 cut(s)	340
BtsI	GCAGTG	1 cut(s)	420
BtsIMutI	CAGTG	1 cut(s)	420
Cac8I	GCNNGC	3 cut(s)	308, 318, 383
CfoI	GCGC	3 cut(s)	197, 295, 351
Cfr10I	RCCGGY	2 cut(s)	102, 381
Cfr13I	GGNCC	2 cut(s)	277, 492
Csp6I	GTAC	8 cut(s)	63, 78, 87, 148, 424, 528, 540, 546
CviAII	CATG	3 cut(s)	184, 321, 374
CviQI	GTAC	8 cut(s)	63, 78, 87, 148, 424, 528, 540, 546
DdeI	CTNAG	2 cut(s)	52, 387
DinI	GGCGCC	1 cut(s)	350
DpnI	GATC	2 cut(s)	228, 248
DpnII	GATC	2 cut(s)	226, 246
Eam1104I	CTCTTC	3 cut(s)	113, 476, 482
EarI	CTCTTC	3 cut(s)	113, 476, 482
Eco47I	GGWCC	1 cut(s)	277
Eco72I	CACGTG	1 cut(s)	202
Eco81I	CCTNAGG	1 cut(s)	387
EcoNI	CCTNNNNNAGG	1 cut(s)	431
EcoO109I	RGGNCCY	1 cut(s)	277
EgeI	GGCGCC	1 cut(s)	350
EheI	GGCGCC	1 cut(s)	350
FaeI	CATG	3 cut(s)	187, 324, 377
FaiI	YATR	7 cut(s)	108, 185, 322, 366, 375, 474, 571
FaqI	GGGAC	2 cut(s)	82, 263
FatI	CATG	3 cut(s)	183, 320, 373
FauI	CCCGC	1 cut(s)	315
Fnu4HI	GCNGC	3 cut(s)	193, 328, 360
FokI	GGATG	1 cut(s)	347
FseI	GGCCGGCC	1 cut(s)	385
Fsp4HI	GCNGC	3 cut(s)	193, 328, 360
FspBI	CTAG	4 cut(s)	99, 525, 534, 543
GlaI	GCGC	3 cut(s)	196, 294, 350
GluI	GCNGC	3 cut(s)	193, 328, 360
GsaI	CCCAGC	1 cut(s)	39
GsuI	CTGGAG	2 cut(s)	6, 227
HaeII	RGCGCY	3 cut(s)	198, 296, 352
HaeIII	GGCC	4 cut(s)	381, 385, 458, 493
HapII	CCGG	4 cut(s)	103, 154, 355, 382
HhaI	GCGC	3 cut(s)	197, 295, 351
Hin1I	GRCGYC	1 cut(s)	349
Hin1II	CATG	3 cut(s)	187, 324, 377
Hin6I	GCGC	3 cut(s)	195, 293, 349
HinP1I	GCGC	3 cut(s)	195, 293, 349
HpaII	CCGG	4 cut(s)	103, 154, 355, 382
Hpy188III	TCNNGA	2 cut(s)	154, 440
HpyAV	CCTTC	1 cut(s)	148
HpyCH4III	ACNGT	2 cut(s)	86, 91
HpyCH4IV	ACGT	1 cut(s)	201
HpyCH4V	TGCA	1 cut(s)	560
HpyF3I	CTNAG	2 cut(s)	52, 387
HpySE526I	ACGT	1 cut(s)	201
Hsp92I	GRCGYC	1 cut(s)	349
Hsp92II	CATG	3 cut(s)	187, 324, 377
HspAI	GCGC	3 cut(s)	195, 293, 349
KasI	GGCGCC	1 cut(s)	348
KflI	GGGWCCC	1 cut(s)	277
Kpn2I	TCCGGA	1 cut(s)	153
KroI	GCCGGC	1 cut(s)	381
KroNI	GCCGGC	1 cut(s)	383
Kzo9I	GATC	2 cut(s)	226, 246
LmnI	GCTCC	3 cut(s)	25, 370, 557
Lsp1109I	GCAGC	2 cut(s)	339, 371
LweI	GCATC	2 cut(s)	48, 325
MaeI	CTAG	4 cut(s)	99, 525, 534, 543
MaeII	ACGT	1 cut(s)	201
MalI	GATC	2 cut(s)	228, 248
MboI	GATC	2 cut(s)	226, 246
MboII	GAAGA	4 cut(s)	6, 130, 493, 499
MflI	RGATCY	1 cut(s)	246
Mly113I	GGCGCC	1 cut(s)	349
MroI	TCCGGA	1 cut(s)	153
MroNI	GCCGGC	1 cut(s)	381
MroXI	GAANNNNTTC	1 cut(s)	137
MspI	CCGG	4 cut(s)	103, 154, 355, 382
MspR9I	CCNGG	1 cut(s)	356
MvnI	CGCG	1 cut(s)	432
NaeI	GCCGGC	1 cut(s)	383
NarI	GGCGCC	1 cut(s)	349
NciI	CCSGG	1 cut(s)	356
NdeII	GATC	2 cut(s)	226, 246
NgoMIV	GCCGGC	1 cut(s)	381
NlaIII	CATG	3 cut(s)	187, 324, 377
NlaIV	GGNNCC	4 cut(s)	158, 278, 279, 350
PdiI	GCCGGC	1 cut(s)	383
PdmI	GAANNNNTTC	1 cut(s)	137
PkrI	GCNGC	3 cut(s)	194, 329, 361
PluTI	GGCGCC	1 cut(s)	352
PmaCI	CACGTG	1 cut(s)	202
PmlI	CACGTG	1 cut(s)	202
Ppu21I	YACGTR	1 cut(s)	202
PpuMI	RGGWCCY	1 cut(s)	277
Psp5II	RGGWCCY	1 cut(s)	277
PspCI	CACGTG	1 cut(s)	202
PspFI	CCCAGC	1 cut(s)	35
PspN4I	GGNNCC	4 cut(s)	158, 278, 279, 350
PspPI	GGNCC	2 cut(s)	277, 492
PspPPI	RGGWCCY	1 cut(s)	277
PsuI	RGATCY	1 cut(s)	246
RigI	GGCCGGCC	1 cut(s)	385
RsaI	GTAC	8 cut(s)	64, 79, 88, 149, 425, 529, 541, 547
RsaNI	GTAC	8 cut(s)	63, 78, 87, 148, 424, 528, 540, 546
SatI	GCNGC	3 cut(s)	193, 328, 360
Sau3AI	GATC	2 cut(s)	226, 246
Sau96I	GGNCC	2 cut(s)	277, 492
ScaI	AGTACT	1 cut(s)	529
ScrFI	CCNGG	1 cut(s)	356
SfaNI	GCATC	2 cut(s)	48, 325
SfoI	GGCGCC	1 cut(s)	350
SinI	GGWCC	1 cut(s)	277
SpeI	ACTAGT	3 cut(s)	524, 533, 542
SsiI	CCGC	5 cut(s)	163, 192, 217, 308, 430
SspDI	GGCGCC	1 cut(s)	348
SspMI	CTAG	4 cut(s)	99, 525, 534, 543
StyD4I	CCNGG	1 cut(s)	354
TaaI	ACNGT	2 cut(s)	86, 91
TaiI	ACGT	1 cut(s)	204
TatI	WGTACW	1 cut(s)	527
TauI	GCSGC	1 cut(s)	195
TscAI	CASTG	1 cut(s)	420
TseI	GCWGC	2 cut(s)	327, 359
TspRI	CASTG	1 cut(s)	420
VpaK11BI	GGWCC	1 cut(s)	277
XagI	CCTNNNNNAGG	1 cut(s)	431
XmnI	GAANNNNTTC	1 cut(s)	137
XspI	CTAG	4 cut(s)	99, 525, 534, 543
ZrmI	AGTACT	1 cut(s)	529

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.