Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0012719

Physical Location & Seq

Genomic Coordinates Reverse (-)

1396782 .. 1399949

Gene Structure 3168 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG021900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGTTAAACTCCACTCCTACAAGCATAAGATTTTCTCTCTCAAGTCATTTCACTCACTATAGAGACAACACCGCCAAGAAAGAGAAAACCCTAGGAATTAAAAACCAAGGAGAAGAAGAAGAAGACCCTTTTCTCCAACCTCAACACCAACCAGCCATGGACTTGGTTTCATCAGCTCCAACCAACACTCCCAGCAGCGCCTTTGAAACCCCATCTGCCTTGGCCATTAGTACTAGTAACGGTACAGGGGCAAACAACAGTAACAGTACCAGTACTACTGCTCTCATTACTTCTCCTAGCCGATATGAGAACCAGAAGAGGCGAGACTGGAACACCTTCTGCCAGTACCTCCGTAACCATCGTCCTCCGCTGTCCCTTCCCATGTGTAGCGGGGCCCACGTCCTGGAGTTCCTCCGGTACTTGGATCAGTTCGGAAAGACCAAGATCCACAACCACAGCTGCCCCTTCTTCGGGCTGCCAAACCCACCCGCGCCCTGCCCCTGCCCGCTTCGACAGGCCTGGGGCAGCTTGGACGCTCTCATTGGGCGCCTCCGGGCAGCCTATGAGGAGCATGGAGGGCGGCCCGAGGCGAACCCTTTTGGGGCAAGAGCTGTGAGGCTGTACCTCCGCGAGGTTCGTGATTTCCAGTCCAAGGCGAGAGGAGTGAGCTATGACAAGAAGAGGAAGAGGCCCAAGCCAAGGCCAACACCAGTACCAACACCAACAACTAGTGCCACTACAACTAGTACCACTACTAGTGGCACGACCTCGTCGTCTGCAACTCTCTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009639 GO:0009653 GO:0009826 GO:0009987 GO:0010114 GO:0010218 GO:0010467 GO:0016043 GO:0016049 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0032502 GO:0032774 GO:0032989 GO:0034641 GO:0034645 GO:0034654 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048589 GO:0048856 GO:0048869 GO:0050896 GO:0060560 GO:0071704 GO:0071840 GO:0090304 GO:0090698 GO:0097659 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF640

Protein Analysis

263

Amino Acids

28.98

Weight (kDa)

9.73

Isoelectric Point (pI)

48.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ALOG_dom	PF04852	97 - 214	7.9e-65	ALOG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012719)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04510 AT5G28490
fragaria_vesca	FvH4_6g01940
malus_domestica	MD04G1229700.v1.1
prunus_persica	Prupe.6G349800_v2.0.a1
pyrus_communis	pycom04g20350 pycom12g22620 pycom12g22670
rosa_chinensis	RchiOBHm_Chr3g0449731
rosa_laevigata	RLG00000025801
rosa_multiflora	Rmu_sc0000610.1_g000016
rosa_roxburghii	Rroxscaffold_6G00427600
rosa_rugosa	Rorug02G0622800
rosa_samantha	Rh3AG021200 Rh3BG021900 Rh3CG020500 Rh3DG021700
rosa_wichuraiana	Rw3G001750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	772
AccB1I	GGYRCC	1 cut(s)	546
AccB7I	CCANNNNNTGG	1 cut(s)	403
AccII	CGCG	2 cut(s)	491, 630
AciI	CCGC	7 cut(s)	72, 368, 390, 489, 506, 580, 628
AclWI	GGATC	2 cut(s)	432, 439
AcoI	YGGCCR	1 cut(s)	222
AcyI	GRCGYC	1 cut(s)	547
AfaI	GTAC	9 cut(s)	232, 244, 268, 274, 347, 419, 623, 714, 748
AfiI	CCNNNNNNNGG	8 cut(s)	403, 421, 470, 471, 601, 631, 652, 699
AgsI	TTSAA	1 cut(s)	206
AhlI	ACTAGT	4 cut(s)	233, 728, 743, 755
AjiI	CACGTC	1 cut(s)	400
AjnI	CCWGG	2 cut(s)	402, 518
AluBI	AGCT	5 cut(s)	176, 459, 528, 611, 669
AluI	AGCT	5 cut(s)	176, 459, 528, 611, 669
Alw26I	GTCTC	2 cut(s)	57, 318
AlwI	GGATC	2 cut(s)	432, 439
Ama87I	CYCGRG	1 cut(s)	584
AoxI	GGCC	6 cut(s)	222, 393, 516, 581, 689, 701
ApaI	GGGCCC	1 cut(s)	397
ApeKI	GCWGC	5 cut(s)	195, 459, 475, 525, 557
Asp700I	GAANNNNTTC	1 cut(s)	335
AspA2I	CCTAGG	1 cut(s)	91
AspLEI	GCGC	3 cut(s)	200, 493, 549
AspS9I	GGNCC	4 cut(s)	393, 394, 582, 690
AsuC2I	CCSGG	1 cut(s)	554
AvaI	CYCGRG	1 cut(s)	584
AvrII	CCTAGG	1 cut(s)	91
BaeGI	GKGCMC	1 cut(s)	397
BaeI	ACNNNNGTAYC	2 cut(s)	696, 729
BalI	TGGCCA	1 cut(s)	224
BanI	GGYRCC	1 cut(s)	546
BanII	GRGCYC	1 cut(s)	397
BbsI	GAAGAC	1 cut(s)	129
BbvI	GCAGC	5 cut(s)	207, 446, 462, 537, 569
BccI	CCATC	2 cut(s)	220, 366
BciT130I	CCWGG	2 cut(s)	404, 520
BcnI	CCSGG	1 cut(s)	554
BcoDI	GTCTC	2 cut(s)	57, 318
BcuI	ACTAGT	4 cut(s)	233, 728, 743, 755
BfaI	CTAG	6 cut(s)	92, 234, 297, 729, 744, 756
BfmI	CTRYAG	1 cut(s)	58
BfoI	RGCGCY	2 cut(s)	201, 550
BisI	GCNGC	6 cut(s)	196, 460, 476, 526, 558, 581
BlnI	CCTAGG	1 cut(s)	91
BlsI	GCNGC	6 cut(s)	197, 461, 477, 527, 559, 582
BmcAI	AGTACT	2 cut(s)	232, 274
Bme1390I	CCNGG	3 cut(s)	404, 520, 554
BmeT110I	CYCGRG	1 cut(s)	584
BmgBI	CACGTC	1 cut(s)	400
BmgT120I	GGNCC	4 cut(s)	393, 394, 582, 690
BmiI	GGNNCC	3 cut(s)	394, 395, 548
BmrFI	CCNGG	3 cut(s)	404, 520, 554
BpiI	GAAGAC	1 cut(s)	129
BpmI	CTGGAG	1 cut(s)	425
BpuEI	CTTGAG	1 cut(s)	25
BpuMI	CCSGG	1 cut(s)	554
BsaHI	GRCGYC	1 cut(s)	547
BsaJI	CCNNGG	8 cut(s)	91, 106, 156, 219, 519, 585, 651, 698
BsaWI	WCCGGW	1 cut(s)	414
BsaXI	ACNNNNNCTCC	2 cut(s)	172, 202
Bsc4I	CCNNNNNNNGG	8 cut(s)	403, 421, 470, 471, 601, 631, 652, 699
Bse1I	ACTGG	5 cut(s)	270, 332, 343, 646, 710
BseBI	CCWGG	2 cut(s)	404, 520
BseDI	CCNNGG	8 cut(s)	91, 106, 156, 219, 519, 585, 651, 698
BseLI	CCNNNNNNNGG	8 cut(s)	403, 421, 470, 471, 601, 631, 652, 699
BseNI	ACTGG	5 cut(s)	270, 332, 343, 646, 710
BseRI	GAGGAG	2 cut(s)	581, 675
BseSI	GKGCMC	1 cut(s)	397
BseXI	GCAGC	5 cut(s)	207, 446, 462, 537, 569
BseYI	CCCAGC	1 cut(s)	191
Bsh1236I	CGCG	2 cut(s)	491, 630
BshFI	GGCC	6 cut(s)	224, 395, 518, 583, 691, 703
BshNI	GGYRCC	1 cut(s)	546
BsiHKCI	CYCGRG	1 cut(s)	584
BsiSI	CCGG	2 cut(s)	415, 553
BslFI	GGGAC	1 cut(s)	358
BslI	CCNNNNNNNGG	8 cut(s)	403, 421, 470, 471, 601, 631, 652, 699
BsmAI	GTCTC	2 cut(s)	57, 318
BsmFI	GGGAC	1 cut(s)	358
BsnI	GGCC	6 cut(s)	224, 395, 518, 583, 691, 703
BsoBI	CYCGRG	1 cut(s)	584
Bsp120I	GGGCCC	1 cut(s)	393
Bsp1286I	GDGCHC	1 cut(s)	397
Bsp143I	GATC	2 cut(s)	424, 444
Bsp19I	CCATGG	1 cut(s)	156
BspACI	CCGC	7 cut(s)	72, 368, 390, 489, 506, 580, 628
BspANI	GGCC	6 cut(s)	224, 395, 518, 583, 691, 703
BspFNI	CGCG	2 cut(s)	491, 630
BspLI	GGNNCC	3 cut(s)	394, 395, 548
BspPI	GGATC	2 cut(s)	432, 439
BspT107I	GGYRCC	1 cut(s)	546
BsrI	ACTGG	5 cut(s)	270, 332, 343, 646, 710
BssECI	CCNNGG	8 cut(s)	91, 106, 156, 219, 519, 585, 651, 698
BssMI	GATC	2 cut(s)	424, 444
BssNI	GRCGYC	1 cut(s)	547
BssT1I	CCWWGG	6 cut(s)	91, 106, 156, 219, 651, 698
Bst2UI	CCWGG	2 cut(s)	404, 520
Bst4CI	ACNGT	3 cut(s)	242, 260, 266
Bst6I	CTCTTC	3 cut(s)	311, 674, 680
BstACI	GRCGYC	1 cut(s)	547
BstC8I	GCNNGC	1 cut(s)	506
BstDSI	CCRYGG	1 cut(s)	156
BstENI	CCTNNNNNAGG	1 cut(s)	629
BstFNI	CGCG	2 cut(s)	491, 630
BstH2I	RGCGCY	2 cut(s)	201, 550
BstHHI	GCGC	3 cut(s)	200, 493, 549
BstKTI	GATC	2 cut(s)	427, 447
BstMAI	GTCTC	2 cut(s)	57, 318
BstMBI	GATC	2 cut(s)	424, 444
BstMWI	GCNNNNNNNGC	1 cut(s)	577
BstNI	CCWGG	2 cut(s)	404, 520
BstSCI	CCNGG	3 cut(s)	402, 518, 552
BstSFI	CTRYAG	1 cut(s)	58
BstSLI	GKGCMC	1 cut(s)	397
BstUI	CGCG	2 cut(s)	491, 630
BstV1I	GCAGC	5 cut(s)	207, 446, 462, 537, 569
BstV2I	GAAGAC	1 cut(s)	129
BstX2I	RGATCY	1 cut(s)	444
BstXI	CCANNNNNNTGG	1 cut(s)	163
BstYI	RGATCY	1 cut(s)	444
BsuRI	GGCC	6 cut(s)	224, 395, 518, 583, 691, 703
BtgI	CCRYGG	1 cut(s)	156
BtrI	CACGTC	1 cut(s)	400
Cac8I	GCNNGC	1 cut(s)	506
CfoI	GCGC	3 cut(s)	200, 493, 549
Cfr13I	GGNCC	4 cut(s)	393, 394, 582, 690
CseI	GACGC	1 cut(s)	542
Csp6I	GTAC	9 cut(s)	231, 243, 267, 273, 346, 418, 622, 713, 747
CviAII	CATG	3 cut(s)	157, 382, 572
CviQI	GTAC	9 cut(s)	231, 243, 267, 273, 346, 418, 622, 713, 747
DinI	GGCGCC	1 cut(s)	548
DpnI	GATC	2 cut(s)	426, 446
DpnII	GATC	2 cut(s)	424, 444
DrdI	GACNNNNNNGTC	1 cut(s)	772
DseDI	GACNNNNNNGTC	1 cut(s)	772
EaeI	YGGCCR	1 cut(s)	222
Eam1104I	CTCTTC	3 cut(s)	311, 674, 680
EarI	CTCTTC	3 cut(s)	311, 674, 680
Eco130I	CCWWGG	6 cut(s)	91, 106, 156, 219, 651, 698
Eco147I	AGGCCT	1 cut(s)	518
Eco24I	GRGCYC	1 cut(s)	397
Eco88I	CYCGRG	1 cut(s)	584
EcoNI	CCTNNNNNAGG	1 cut(s)	629
EcoO109I	RGGNCCY	1 cut(s)	393
EcoRII	CCWGG	2 cut(s)	402, 518
EcoT14I	CCWWGG	6 cut(s)	91, 106, 156, 219, 651, 698
EcoT38I	GRGCYC	1 cut(s)	397
EgeI	GGCGCC	1 cut(s)	548
EheI	GGCGCC	1 cut(s)	548
ErhI	CCWWGG	6 cut(s)	91, 106, 156, 219, 651, 698
FaeI	CATG	3 cut(s)	160, 385, 575
FaiI	YATR	9 cut(s)	26, 60, 158, 306, 383, 564, 573, 672, 790
FaqI	GGGAC	1 cut(s)	358
FatI	CATG	3 cut(s)	156, 381, 571
FauI	CCCGC	3 cut(s)	383, 496, 513
Fnu4HI	GCNGC	6 cut(s)	196, 460, 476, 526, 558, 581
FriOI	GRGCYC	1 cut(s)	397
Fsp4HI	GCNGC	6 cut(s)	196, 460, 476, 526, 558, 581
FspBI	CTAG	6 cut(s)	92, 234, 297, 729, 744, 756
GlaI	GCGC	3 cut(s)	199, 492, 548
GluI	GCNGC	6 cut(s)	196, 460, 476, 526, 558, 581
GsaI	CCCAGC	1 cut(s)	195
GsuI	CTGGAG	1 cut(s)	425
HaeII	RGCGCY	2 cut(s)	201, 550
HaeIII	GGCC	6 cut(s)	224, 395, 518, 583, 691, 703
HapII	CCGG	2 cut(s)	415, 553
HgaI	GACGC	1 cut(s)	542
HhaI	GCGC	3 cut(s)	200, 493, 549
Hin1I	GRCGYC	1 cut(s)	547
Hin1II	CATG	3 cut(s)	160, 385, 575
Hin6I	GCGC	3 cut(s)	198, 491, 547
HinP1I	GCGC	3 cut(s)	198, 491, 547
HpaII	CCGG	2 cut(s)	415, 553
Hpy188I	TCNGA	1 cut(s)	434
Hpy188III	TCNNGA	1 cut(s)	638
Hpy99I	CGWCG	1 cut(s)	775
HpyAV	CCTTC	3 cut(s)	346, 386, 475
HpyCH4III	ACNGT	3 cut(s)	242, 260, 266
HpyCH4IV	ACGT	1 cut(s)	399
HpyCH4V	TGCA	1 cut(s)	779
HpyF10VI	GCNNNNNNNGC	1 cut(s)	577
HpySE526I	ACGT	1 cut(s)	399
Hsp92I	GRCGYC	1 cut(s)	547
Hsp92II	CATG	3 cut(s)	160, 385, 575
HspAI	GCGC	3 cut(s)	198, 491, 547
KasI	GGCGCC	1 cut(s)	546
Kzo9I	GATC	2 cut(s)	424, 444
LmnI	GCTCC	2 cut(s)	181, 568
Lsp1109I	GCAGC	5 cut(s)	207, 446, 462, 537, 569
MaeI	CTAG	6 cut(s)	92, 234, 297, 729, 744, 756
MaeII	ACGT	1 cut(s)	399
MaeIII	GTNAC	3 cut(s)	236, 260, 353
MalI	GATC	2 cut(s)	426, 446
MboI	GATC	2 cut(s)	424, 444
MboII	GAAGA	8 cut(s)	125, 128, 131, 134, 328, 460, 691, 697
MflI	RGATCY	1 cut(s)	444
MhlI	GDGCHC	1 cut(s)	397
MlsI	TGGCCA	1 cut(s)	224
MluCI	AATT	1 cut(s)	96
MluNI	TGGCCA	1 cut(s)	224
Mly113I	GGCGCC	1 cut(s)	547
MmeI	TCCRAC	2 cut(s)	160, 203
Mox20I	TGGCCA	1 cut(s)	224
MroXI	GAANNNNTTC	1 cut(s)	335
MscI	TGGCCA	1 cut(s)	224
MseI	TTAA	2 cut(s)	5, 99
Msp20I	TGGCCA	1 cut(s)	224
MspA1I	CMGCKG	2 cut(s)	370, 459
MspI	CCGG	2 cut(s)	415, 553
MspR9I	CCNGG	3 cut(s)	404, 520, 554
MvaI	CCWGG	2 cut(s)	404, 520
MvnI	CGCG	2 cut(s)	491, 630
MwoI	GCNNNNNNNGC	1 cut(s)	577
NarI	GGCGCC	1 cut(s)	547
NciI	CCSGG	1 cut(s)	554
NcoI	CCATGG	1 cut(s)	156
NdeII	GATC	2 cut(s)	424, 444
NlaIII	CATG	3 cut(s)	160, 385, 575
NlaIV	GGNNCC	3 cut(s)	394, 395, 548
PceI	AGGCCT	1 cut(s)	518
PcsI	WCGNNNNNNNCGW	1 cut(s)	770
PdmI	GAANNNNTTC	1 cut(s)	335
PflFI	GACNNNGTC	1 cut(s)	769
PflMI	CCANNNNNTGG	1 cut(s)	403
PfoI	TCCNGGA	1 cut(s)	402
PkrI	GCNGC	6 cut(s)	197, 461, 477, 527, 559, 582
PluTI	GGCGCC	1 cut(s)	550
Psp6I	CCWGG	2 cut(s)	402, 518
PspFI	CCCAGC	1 cut(s)	191
PspGI	CCWGG	2 cut(s)	402, 518
PspN4I	GGNNCC	3 cut(s)	394, 395, 548
PspOMI	GGGCCC	1 cut(s)	393
PspPI	GGNCC	4 cut(s)	393, 394, 582, 690
PsuI	RGATCY	1 cut(s)	444
PsyI	GACNNNGTC	1 cut(s)	769
PvuII	CAGCTG	1 cut(s)	459
RsaI	GTAC	9 cut(s)	232, 244, 268, 274, 347, 419, 623, 714, 748
RsaNI	GTAC	9 cut(s)	231, 243, 267, 273, 346, 418, 622, 713, 747
SaqAI	TTAA	2 cut(s)	5, 99
SatI	GCNGC	6 cut(s)	196, 460, 476, 526, 558, 581
Sau3AI	GATC	2 cut(s)	424, 444
Sau96I	GGNCC	4 cut(s)	393, 394, 582, 690
ScaI	AGTACT	2 cut(s)	232, 274
ScrFI	CCNGG	3 cut(s)	404, 520, 554
SduI	GDGCHC	1 cut(s)	397
SfcI	CTRYAG	1 cut(s)	58
SfoI	GGCGCC	1 cut(s)	548
SmlI	CTYRAG	1 cut(s)	40
SmoI	CTYRAG	1 cut(s)	40
SpeI	ACTAGT	4 cut(s)	233, 728, 743, 755
Sse9I	AATT	1 cut(s)	96
SseBI	AGGCCT	1 cut(s)	518
SsiI	CCGC	7 cut(s)	72, 368, 390, 489, 506, 580, 628
SspDI	GGCGCC	1 cut(s)	546
SspMI	CTAG	6 cut(s)	92, 234, 297, 729, 744, 756
StuI	AGGCCT	1 cut(s)	518
StyD4I	CCNGG	3 cut(s)	402, 518, 552
StyI	CCWWGG	6 cut(s)	91, 106, 156, 219, 651, 698
TaaI	ACNGT	3 cut(s)	242, 260, 266
TaiI	ACGT	1 cut(s)	402
TaqI	TCGA	1 cut(s)	511
TasI	AATT	1 cut(s)	96
TatI	WGTACW	2 cut(s)	230, 272
TauI	GCSGC	1 cut(s)	583
Tru1I	TTAA	2 cut(s)	5, 99
Tru9I	TTAA	2 cut(s)	5, 99
TseI	GCWGC	5 cut(s)	195, 459, 475, 525, 557
TspDTI	ATGAA	1 cut(s)	159
TspGWI	ACGGA	1 cut(s)	341
Tth111I	GACNNNGTC	1 cut(s)	769
Van91I	CCANNNNNTGG	1 cut(s)	403
XagI	CCTNNNNNAGG	1 cut(s)	629
XmaJI	CCTAGG	1 cut(s)	91
XmnI	GAANNNNTTC	1 cut(s)	335
XspI	CTAG	6 cut(s)	92, 234, 297, 729, 744, 756
ZrmI	AGTACT	2 cut(s)	232, 274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.