Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0012719

Physical Location & Seq

Genomic Coordinates Reverse (-)

73931767 .. 73933118

Gene Structure 1352 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0622800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGTCTGTTGTGGCAGCAGTCTCAATTTCCCAATTTTCAGTACCAAAAGGTTTAATTCCAAGTTCAACAGCAGCTCACCACAAGCAAGCCTATCTTGAGGGTCATGAGTATACCCTAAAGCTGAATGAAGCCTATAAGGTTCTGTTTAGGGGGAATCTGAGGAAGGAATATGATGCTTCTATTGGTCAAAGGAGAGTAGGTGTCAGAGGAAACAGCTCAACCTTTGATGGCAGCTCATGGAAGGGAGTTTTGAGACCCCAAGCTCTCTTTGTTGATGAAAATGCTTGCATAGGTTGCAGACAATGTGTGCACCAAGCAAGTGCTACATACATGTTTGATGAGGCTCTCGGATGTGCAAGGGTTCAACTACAATTCGGTGACGATGATCAAAAGATTGAGATAACTAACCAAGTTCTTGCCAATCGAAACACTGTATCAGTTGACTCATGCCCTGTGAACTGCATTCATTGGGTGGAAAGAGAAGAACTGCCAGTGCTCGAGTTCCTCATCCAGCCTCGGCCAACAGAAGGACATGGAATATTTGGAGGAGGTTGGGAAAGACCAGTAAATGTGTTCATGGCTGCTAAGTCATTCAATAAGCAACTGAAAGAGGAGGCTGAAAATGAAAACCATCACCGAAATAGTATTAATTCTCACCTGATTTCTATGGATCAGTTTAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009639 GO:0009653 GO:0009826 GO:0009987 GO:0010114 GO:0010218 GO:0010467 GO:0016043 GO:0016049 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0032502 GO:0032774 GO:0032989 GO:0034641 GO:0034645 GO:0034654 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048589 GO:0048856 GO:0048869 GO:0050896 GO:0060560 GO:0071704 GO:0071840 GO:0090304 GO:0090698 GO:0097659 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF640

Protein Analysis

227

Amino Acids

25.39

Weight (kDa)

6.3

Isoelectric Point (pI)

43.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fer4_15	PF13459	90 - 157	2.9e-07	4Fe-4S single cluster domain
Fer4_13	PF13370	91 - 157	9.9e-07	4Fe-4S single cluster domain of Ferredoxin I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Image

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Publication-ready

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Orthologous Genes (Group: OG0012719)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04510 AT5G28490
fragaria_vesca	FvH4_6g01940
malus_domestica	MD04G1229700.v1.1
prunus_persica	Prupe.6G349800_v2.0.a1
pyrus_communis	pycom04g20350 pycom12g22620 pycom12g22670
rosa_chinensis	RchiOBHm_Chr3g0449731
rosa_laevigata	RLG00000025801
rosa_multiflora	Rmu_sc0000610.1_g000016
rosa_roxburghii	Rroxscaffold_6G00427600
rosa_rugosa	Rorug02G0622800
rosa_samantha	Rh3AG021200 Rh3BG021900 Rh3CG020500 Rh3DG021700
rosa_wichuraiana	Rw3G001750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	110
AclWI	GGATC	1 cut(s)	678
AcoI	YGGCCR	1 cut(s)	518
AfaI	GTAC	1 cut(s)	42
AfiI	CCNNNNNNNGG	1 cut(s)	527
AflIII	ACRYGT	1 cut(s)	330
AgsI	TTSAA	3 cut(s)	66, 365, 595
AluBI	AGCT	6 cut(s)	74, 121, 216, 234, 263, 681
AluI	AGCT	6 cut(s)	74, 121, 216, 234, 263, 681
Alw21I	GWGCWC	2 cut(s)	312, 498
Alw26I	GTCTC	2 cut(s)	25, 247
Alw44I	GTGCAC	1 cut(s)	308
AlwI	GGATC	1 cut(s)	678
Ama87I	CYCGRG	1 cut(s)	497
AoxI	GGCC	1 cut(s)	518
ApaLI	GTGCAC	1 cut(s)	308
ApeKI	GCWGC	4 cut(s)	14, 71, 231, 581
AseI	ATTAAT	1 cut(s)	648
AsuHPI	GGTGA	4 cut(s)	68, 389, 626, 647
AvaI	CYCGRG	1 cut(s)	497
BaeGI	GKGCMC	1 cut(s)	312
Bbv12I	GWGCWC	2 cut(s)	312, 498
BbvI	GCAGC	4 cut(s)	26, 83, 243, 568
BccI	CCATC	2 cut(s)	221, 639
BclI	TGATCA	1 cut(s)	385
BcoDI	GTCTC	2 cut(s)	25, 247
BfaI	CTAG	1 cut(s)	682
BisI	GCNGC	4 cut(s)	15, 72, 232, 582
BlsI	GCNGC	4 cut(s)	16, 73, 233, 583
BmeT110I	CYCGRG	1 cut(s)	497
BmsI	GCATC	1 cut(s)	163
BpuEI	CTTGAG	1 cut(s)	116
BsaI	GGTCTC	1 cut(s)	247
BsaJI	CCNNGG	1 cut(s)	515
BsaXI	ACNNNNNCTCC	2 cut(s)	184, 214
Bsc4I	CCNNNNNNNGG	1 cut(s)	527
Bse1I	ACTGG	2 cut(s)	491, 563
BseDI	CCNNGG	1 cut(s)	515
BseGI	GGATG	2 cut(s)	356, 507
BseLI	CCNNNNNNNGG	1 cut(s)	527
BseMII	CTCAG	1 cut(s)	149
BseNI	ACTGG	2 cut(s)	491, 563
BseRI	GAGGAG	2 cut(s)	561, 626
BseSI	GKGCMC	1 cut(s)	312
BseXI	GCAGC	4 cut(s)	26, 83, 243, 568
BshFI	GGCC	1 cut(s)	520
BsiHKAI	GWGCWC	2 cut(s)	312, 498
BsiHKCI	CYCGRG	1 cut(s)	497
BslI	CCNNNNNNNGG	1 cut(s)	527
BsmAI	GTCTC	2 cut(s)	25, 247
BsmI	GAATGC	1 cut(s)	462
BsnI	GGCC	1 cut(s)	520
Bso31I	GGTCTC	1 cut(s)	247
BsoBI	CYCGRG	1 cut(s)	497
Bsp1286I	GDGCHC	2 cut(s)	312, 498
Bsp143I	GATC	2 cut(s)	385, 670
BspANI	GGCC	1 cut(s)	520
BspCNI	CTCAG	1 cut(s)	150
BspHI	TCATGA	1 cut(s)	103
BspPI	GGATC	1 cut(s)	678
BspTNI	GGTCTC	1 cut(s)	247
BsrI	ACTGG	2 cut(s)	491, 563
BssECI	CCNNGG	1 cut(s)	515
BssMI	GATC	2 cut(s)	385, 670
BssNAI	GTATAC	1 cut(s)	111
Bst1107I	GTATAC	1 cut(s)	111
Bst4CI	ACNGT	1 cut(s)	433
BstAPI	GCANNNNNTGC	1 cut(s)	294
BstC8I	GCNNGC	2 cut(s)	87, 286
BstDEI	CTNAG	2 cut(s)	158, 585
BstF5I	GGATG	2 cut(s)	356, 507
BstKTI	GATC	2 cut(s)	388, 673
BstMAI	GTCTC	2 cut(s)	25, 247
BstMBI	GATC	2 cut(s)	385, 670
BstMWI	GCNNNNNNNGC	1 cut(s)	294
BstNSI	RCATGY	1 cut(s)	334
BstSLI	GKGCMC	1 cut(s)	312
BstV1I	GCAGC	4 cut(s)	26, 83, 243, 568
BstZ17I	GTATAC	1 cut(s)	111
BsuRI	GGCC	1 cut(s)	520
BtsCI	GGATG	2 cut(s)	356, 507
BtsIMutI	CAGTG	2 cut(s)	429, 498
Cac8I	GCNNGC	2 cut(s)	87, 286
CciI	TCATGA	1 cut(s)	103
Csp6I	GTAC	1 cut(s)	41
CviAII	CATG	6 cut(s)	104, 237, 331, 447, 533, 577
CviQI	GTAC	1 cut(s)	41
DdeI	CTNAG	2 cut(s)	158, 585
DpnI	GATC	2 cut(s)	387, 672
DpnII	GATC	2 cut(s)	385, 670
EaeI	YGGCCR	1 cut(s)	518
Eco31I	GGTCTC	1 cut(s)	247
Eco88I	CYCGRG	1 cut(s)	497
FaeI	CATG	6 cut(s)	107, 240, 334, 450, 536, 580
FalI	AAGNNNNNCTT	2 cut(s)	78, 110
FatI	CATG	6 cut(s)	103, 236, 330, 446, 532, 576
FbaI	TGATCA	1 cut(s)	385
FblI	GTMKAC	1 cut(s)	110
Fnu4HI	GCNGC	4 cut(s)	15, 72, 232, 582
FokI	GGATG	2 cut(s)	363, 494
Fsp4HI	GCNGC	4 cut(s)	15, 72, 232, 582
FspBI	CTAG	1 cut(s)	682
GluI	GCNGC	4 cut(s)	15, 72, 232, 582
HaeIII	GGCC	1 cut(s)	520
Hin1II	CATG	6 cut(s)	107, 240, 334, 450, 536, 580
HincII	GTYRAC	1 cut(s)	442
HindII	GTYRAC	1 cut(s)	442
HinfI	GANTC	2 cut(s)	154, 443
HphI	GGTGA	4 cut(s)	68, 389, 626, 647
Hpy166II	GTNNAC	4 cut(s)	111, 310, 442, 457
Hpy188I	TCNGA	3 cut(s)	159, 206, 350
Hpy188III	TCNNGA	2 cut(s)	95, 104
Hpy8I	GTNNAC	4 cut(s)	111, 310, 442, 457
HpyAV	CCTTC	3 cut(s)	157, 235, 521
HpyCH4III	ACNGT	1 cut(s)	433
HpyCH4V	TGCA	5 cut(s)	288, 297, 310, 356, 462
HpyF10VI	GCNNNNNNNGC	1 cut(s)	294
HpyF3I	CTNAG	2 cut(s)	158, 585
Hsp92II	CATG	6 cut(s)	107, 240, 334, 450, 536, 580
Ksp22I	TGATCA	1 cut(s)	385
Kzo9I	GATC	2 cut(s)	385, 670
LpnPI	CCDG	5 cut(s)	465, 504, 524, 576, 671
Lsp1109I	GCAGC	4 cut(s)	26, 83, 243, 568
LweI	GCATC	1 cut(s)	163
MaeI	CTAG	1 cut(s)	682
MaeIII	GTNAC	1 cut(s)	377
MalI	GATC	2 cut(s)	387, 672
MboI	GATC	2 cut(s)	385, 670
MboII	GAAGA	1 cut(s)	494
MhlI	GDGCHC	2 cut(s)	312, 498
MluCI	AATT	5 cut(s)	24, 32, 54, 371, 649
MlyI	GAGTC	1 cut(s)	437
MseI	TTAA	2 cut(s)	53, 648
Mva1269I	GAATGC	1 cut(s)	462
MwoI	GCNNNNNNNGC	1 cut(s)	294
NdeII	GATC	2 cut(s)	385, 670
NlaIII	CATG	6 cut(s)	107, 240, 334, 450, 536, 580
NmeAIII	GCCGAG	1 cut(s)	496
NmuCI	GTSAC	1 cut(s)	377
NspI	RCATGY	1 cut(s)	334
PaeR7I	CTCGAG	1 cut(s)	497
PagI	TCATGA	1 cut(s)	103
PciI	ACATGT	1 cut(s)	330
PctI	GAATGC	1 cut(s)	462
PfeI	GAWTC	1 cut(s)	154
PkrI	GCNGC	4 cut(s)	16, 73, 233, 583
PleI	GAGTC	1 cut(s)	437
PpsI	GAGTC	1 cut(s)	437
PscI	ACATGT	1 cut(s)	330
PshBI	ATTAAT	1 cut(s)	648
PspXI	VCTCGAGB	1 cut(s)	497
RsaI	GTAC	1 cut(s)	42
RsaNI	GTAC	1 cut(s)	41
SaqAI	TTAA	2 cut(s)	53, 648
SatI	GCNGC	4 cut(s)	15, 72, 232, 582
Sau3AI	GATC	2 cut(s)	385, 670
SchI	GAGTC	1 cut(s)	437
SduI	GDGCHC	2 cut(s)	312, 498
SfaNI	GCATC	1 cut(s)	163
Sfr274I	CTCGAG	1 cut(s)	497
SlaI	CTCGAG	1 cut(s)	497
SmlI	CTYRAG	2 cut(s)	95, 497
SmoI	CTYRAG	2 cut(s)	95, 497
Sse9I	AATT	5 cut(s)	24, 32, 54, 371, 649
SspI	AATATT	1 cut(s)	540
SspMI	CTAG	1 cut(s)	682
TaaI	ACNGT	1 cut(s)	433
TaqI	TCGA	2 cut(s)	424, 498
TasI	AATT	5 cut(s)	24, 32, 54, 371, 649
TfiI	GAWTC	1 cut(s)	154
Tru1I	TTAA	2 cut(s)	53, 648
Tru9I	TTAA	2 cut(s)	53, 648
TscAI	CASTG	2 cut(s)	436, 498
TseFI	GTSAC	1 cut(s)	377
TseI	GCWGC	4 cut(s)	14, 71, 231, 581
Tsp45I	GTSAC	1 cut(s)	377
TspDTI	ATGAA	5 cut(s)	141, 291, 455, 565, 639
TspRI	CASTG	2 cut(s)	436, 498
VneI	GTGCAC	1 cut(s)	308
VspI	ATTAAT	1 cut(s)	648
XceI	RCATGY	1 cut(s)	334
XhoI	CTCGAG	1 cut(s)	497
XmiI	GTMKAC	1 cut(s)	110
XspI	CTAG	1 cut(s)	682

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.