Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0012719

Physical Location & Seq

Genomic Coordinates Forward (+)

21886962 .. 21887573

Gene Structure 612 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g20350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGATTTAGTTTCAAACCCTATTTCCAACAGCCCCAGCATCACCTTTGAAAGCCCTATAATCACCAATACCAGGGCCATGATCTCTCCACCACCGTCCTCAGCAATATCCACAACCCCCACCACTCCTCCCACCACTCCCAGTCGCTATGAAAACCAAAAGCGGCGGGACTGGAACACCTTCTGCCAGTACCTCCGGAACCACAGGCCGCCTCTGTCGCTCCCGATGTGCAGCGGAGCCCACGTACTGGAGTTCCTCCGGTACCTCGACCAGTTTGGCAAAACCAAGATCCACATCCACAACTGCCCGTTCTTTGGCCTCCCAAACCCACCTGCTCCCTGCCCCTGTCCGCTGAGGCAGGCGTGGGGCAGCCTCGACGCCCTCATTGGCCGCCTTCGAGCTGCCTATGATGAGCACGGGGGGAAGCCTGAGGGCAATCCCTTTGGAGCCAGAGTTGTGAGGCTCTACTTGCGTGAAGTTCGTGATTTCCAGGCAAAGGCAAGAGGGGTTAGTTATGAGAAGAAGAGGAAGAGGCCCAACAATAACAATCCAAAGTCAAGCATGAGTACGGCCATGATCACAAGTTCTGCTGCTTCTACAACTACAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009639 GO:0009653 GO:0009826 GO:0009987 GO:0010114 GO:0010218 GO:0010467 GO:0016043 GO:0016049 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0032502 GO:0032774 GO:0032989 GO:0034641 GO:0034645 GO:0034654 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048589 GO:0048856 GO:0048869 GO:0050896 GO:0060560 GO:0071704 GO:0071840 GO:0090304 GO:0090698 GO:0097659 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF640

Protein Analysis

204

Amino Acids

22.58

Weight (kDa)

9.98

Isoelectric Point (pI)

52.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ALOG_dom	PF04852	41 - 162	1.4e-65	ALOG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012719)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04510 AT5G28490
fragaria_vesca	FvH4_6g01940
malus_domestica	MD04G1229700.v1.1
prunus_persica	Prupe.6G349800_v2.0.a1
pyrus_communis	pycom04g20350 pycom12g22620 pycom12g22670
rosa_chinensis	RchiOBHm_Chr3g0449731
rosa_laevigata	RLG00000025801
rosa_multiflora	Rmu_sc0000610.1_g000016
rosa_roxburghii	Rroxscaffold_6G00427600
rosa_rugosa	Rorug02G0622800
rosa_samantha	Rh3AG021200 Rh3BG021900 Rh3CG020500 Rh3DG021700
rosa_wichuraiana	Rw3G001750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	340
Acc36I	ACCTGC	1 cut(s)	340
Acc65I	GGTACC	1 cut(s)	261
AccB1I	GGYRCC	1 cut(s)	261
AccB7I	CCANNNNNTGG	1 cut(s)	247
AccIII	TCCGGA	1 cut(s)	195
AciI	CCGC	6 cut(s)	163, 166, 209, 234, 350, 391
AclWI	GGATC	1 cut(s)	283
AcoI	YGGCCR	2 cut(s)	388, 570
AcyI	GRCGYC	1 cut(s)	378
AfaI	GTAC	4 cut(s)	191, 246, 263, 568
AfiI	CCNNNNNNNGG	4 cut(s)	72, 247, 314, 496
AgsI	TTSAA	2 cut(s)	15, 50
AjnI	CCWGG	2 cut(s)	71, 489
AluBI	AGCT	1 cut(s)	401
AluI	AGCT	1 cut(s)	401
Alw21I	GWGCWC	1 cut(s)	417
AlwI	GGATC	1 cut(s)	283
Aor13HI	TCCGGA	1 cut(s)	195
AoxI	GGCC	6 cut(s)	75, 206, 316, 388, 533, 570
ApeKI	GCWGC	4 cut(s)	231, 369, 401, 590
Asp700I	GAANNNNTTC	1 cut(s)	179
Asp718I	GGTACC	1 cut(s)	261
AspS9I	GGNCC	2 cut(s)	75, 534
AsuHPI	GGTGA	2 cut(s)	34, 55
AxyI	CCTNAGG	1 cut(s)	429
BanI	GGYRCC	1 cut(s)	261
BanII	GRGCYC	1 cut(s)	241
Bbv12I	GWGCWC	1 cut(s)	417
BbvCI	CCTCAGC	2 cut(s)	100, 353
BbvI	GCAGC	4 cut(s)	243, 381, 388, 577
BceAI	ACGGC	1 cut(s)	585
BciT130I	CCWGG	2 cut(s)	73, 491
BclI	TGATCA	1 cut(s)	576
BfuAI	ACCTGC	1 cut(s)	340
BisI	GCNGC	7 cut(s)	164, 209, 232, 370, 391, 402, 591
BlsI	GCNGC	7 cut(s)	165, 210, 233, 371, 392, 403, 592
Bme1390I	CCNGG	2 cut(s)	73, 491
BmgT120I	GGNCC	2 cut(s)	75, 534
BmiI	GGNNCC	4 cut(s)	200, 238, 263, 448
BmrFI	CCNGG	2 cut(s)	73, 491
BmrI	ACTGGG	1 cut(s)	135
BmsI	GCATC	1 cut(s)	48
BmuI	ACTGGG	1 cut(s)	135
BpmI	CTGGAG	1 cut(s)	269
Bpu10I	CCTNAGC	2 cut(s)	100, 353
BsaAI	YACGTR	1 cut(s)	244
BsaBI	GATNNNNATC	1 cut(s)	293
BsaHI	GRCGYC	1 cut(s)	378
BsaJI	CCNNGG	1 cut(s)	72
BsaWI	WCCGGW	2 cut(s)	195, 258
BsaXI	ACNNNNNCTCC	6 cut(s)	112, 142, 228, 258, 438, 468
Bsc4I	CCNNNNNNNGG	4 cut(s)	72, 247, 314, 496
Bse1I	ACTGG	5 cut(s)	141, 176, 187, 252, 271
Bse21I	CCTNAGG	1 cut(s)	429
Bse8I	GATNNNNATC	1 cut(s)	293
BseAI	TCCGGA	1 cut(s)	195
BseBI	CCWGG	2 cut(s)	73, 491
BseDI	CCNNGG	1 cut(s)	72
BseGI	GGATG	1 cut(s)	294
BseJI	GATNNNNATC	1 cut(s)	293
BseLI	CCNNNNNNNGG	4 cut(s)	72, 247, 314, 496
BseMII	CTCAG	3 cut(s)	114, 344, 420
BseNI	ACTGG	5 cut(s)	141, 176, 187, 252, 271
BseRI	GAGGAG	1 cut(s)	117
BseXI	GCAGC	4 cut(s)	243, 381, 388, 577
BseYI	CCCAGC	1 cut(s)	35
BsgI	GTGCAG	1 cut(s)	250
BshFI	GGCC	6 cut(s)	77, 208, 318, 390, 535, 572
BshNI	GGYRCC	1 cut(s)	261
BsiHKAI	GWGCWC	1 cut(s)	417
BsiSI	CCGG	2 cut(s)	196, 259
BslFI	GGGAC	1 cut(s)	182
BslI	CCNNNNNNNGG	4 cut(s)	72, 247, 314, 496
BsmFI	GGGAC	1 cut(s)	182
BsnI	GGCC	6 cut(s)	77, 208, 318, 390, 535, 572
Bsp1286I	GDGCHC	2 cut(s)	241, 417
Bsp13I	TCCGGA	1 cut(s)	195
Bsp143I	GATC	3 cut(s)	81, 288, 576
BspACI	CCGC	6 cut(s)	163, 166, 209, 234, 350, 391
BspANI	GGCC	6 cut(s)	77, 208, 318, 390, 535, 572
BspCNI	CTCAG	3 cut(s)	113, 345, 421
BspEI	TCCGGA	1 cut(s)	195
BspLI	GGNNCC	4 cut(s)	200, 238, 263, 448
BspMI	ACCTGC	1 cut(s)	340
BspPI	GGATC	1 cut(s)	283
BspT107I	GGYRCC	1 cut(s)	261
BsrI	ACTGG	5 cut(s)	141, 176, 187, 252, 271
BssECI	CCNNGG	1 cut(s)	72
BssMI	GATC	3 cut(s)	81, 288, 576
BssNI	GRCGYC	1 cut(s)	378
Bst2UI	CCWGG	2 cut(s)	73, 491
Bst4CI	ACNGT	1 cut(s)	96
Bst6I	CTCTTC	2 cut(s)	518, 524
BstACI	GRCGYC	1 cut(s)	378
BstBAI	YACGTR	1 cut(s)	244
BstC8I	GCNNGC	1 cut(s)	360
BstDEI	CTNAG	3 cut(s)	100, 353, 429
BstF5I	GGATG	1 cut(s)	294
BstKTI	GATC	3 cut(s)	84, 291, 579
BstMBI	GATC	3 cut(s)	81, 288, 576
BstMWI	GCNNNNNNNGC	2 cut(s)	217, 469
BstNI	CCWGG	2 cut(s)	73, 491
BstSCI	CCNGG	2 cut(s)	71, 489
BstV1I	GCAGC	4 cut(s)	243, 381, 388, 577
BstX2I	RGATCY	1 cut(s)	288
BstYI	RGATCY	1 cut(s)	288
Bsu36I	CCTNAGG	1 cut(s)	429
BsuRI	GGCC	6 cut(s)	77, 208, 318, 390, 535, 572
BtsCI	GGATG	1 cut(s)	294
BveI	ACCTGC	1 cut(s)	340
Cac8I	GCNNGC	1 cut(s)	360
Cfr13I	GGNCC	2 cut(s)	75, 534
CseI	GACGC	1 cut(s)	386
Csp6I	GTAC	4 cut(s)	190, 245, 262, 567
CviAII	CATG	3 cut(s)	79, 562, 574
CviQI	GTAC	4 cut(s)	190, 245, 262, 567
DdeI	CTNAG	3 cut(s)	100, 353, 429
DpnI	GATC	3 cut(s)	83, 290, 578
DpnII	GATC	3 cut(s)	81, 288, 576
EaeI	YGGCCR	2 cut(s)	388, 570
Eam1104I	CTCTTC	2 cut(s)	518, 524
EarI	CTCTTC	2 cut(s)	518, 524
Eco24I	GRGCYC	1 cut(s)	241
Eco81I	CCTNAGG	1 cut(s)	429
EcoRII	CCWGG	2 cut(s)	71, 489
EcoT38I	GRGCYC	1 cut(s)	241
FaeI	CATG	3 cut(s)	82, 565, 577
FaiI	YATR	7 cut(s)	59, 80, 150, 408, 516, 563, 575
FaqI	GGGAC	1 cut(s)	182
FatI	CATG	3 cut(s)	78, 561, 573
FauI	CCCGC	1 cut(s)	159
FbaI	TGATCA	1 cut(s)	576
Fnu4HI	GCNGC	7 cut(s)	164, 209, 232, 370, 391, 402, 591
FokI	GGATG	1 cut(s)	281
FriOI	GRGCYC	1 cut(s)	241
Fsp4HI	GCNGC	7 cut(s)	164, 209, 232, 370, 391, 402, 591
GluI	GCNGC	7 cut(s)	164, 209, 232, 370, 391, 402, 591
GsaI	CCCAGC	1 cut(s)	39
GsuI	CTGGAG	1 cut(s)	269
HaeIII	GGCC	6 cut(s)	77, 208, 318, 390, 535, 572
HapII	CCGG	2 cut(s)	196, 259
HgaI	GACGC	1 cut(s)	386
Hin1I	GRCGYC	1 cut(s)	378
Hin1II	CATG	3 cut(s)	82, 565, 577
HpaII	CCGG	2 cut(s)	196, 259
HphI	GGTGA	2 cut(s)	34, 55
Hpy188III	TCNNGA	3 cut(s)	196, 223, 482
Hpy99I	CGWCG	1 cut(s)	380
HpyAV	CCTTC	2 cut(s)	190, 404
HpyCH4III	ACNGT	1 cut(s)	96
HpyCH4IV	ACGT	1 cut(s)	243
HpyCH4V	TGCA	1 cut(s)	231
HpyF10VI	GCNNNNNNNGC	2 cut(s)	217, 469
HpyF3I	CTNAG	3 cut(s)	100, 353, 429
HpySE526I	ACGT	1 cut(s)	243
Hsp92I	GRCGYC	1 cut(s)	378
Hsp92II	CATG	3 cut(s)	82, 565, 577
Kpn2I	TCCGGA	1 cut(s)	195
KpnI	GGTACC	1 cut(s)	265
Ksp22I	TGATCA	1 cut(s)	576
Kzo9I	GATC	3 cut(s)	81, 288, 576
LmnI	GCTCC	4 cut(s)	225, 236, 340, 446
Lsp1109I	GCAGC	4 cut(s)	243, 381, 388, 577
LweI	GCATC	1 cut(s)	48
MaeII	ACGT	1 cut(s)	243
MalI	GATC	3 cut(s)	83, 290, 578
MboI	GATC	3 cut(s)	81, 288, 576
MboII	GAAGA	3 cut(s)	532, 535, 541
MflI	RGATCY	1 cut(s)	288
MhlI	GDGCHC	2 cut(s)	241, 417
MmeI	TCCRAC	1 cut(s)	51
MroI	TCCGGA	1 cut(s)	195
MroXI	GAANNNNTTC	1 cut(s)	179
MspA1I	CMGCKG	2 cut(s)	234, 352
MspI	CCGG	2 cut(s)	196, 259
MspR9I	CCNGG	2 cut(s)	73, 491
MvaI	CCWGG	2 cut(s)	73, 491
MwoI	GCNNNNNNNGC	2 cut(s)	217, 469
NdeII	GATC	3 cut(s)	81, 288, 576
NlaIII	CATG	3 cut(s)	82, 565, 577
NlaIV	GGNNCC	4 cut(s)	200, 238, 263, 448
PaqCI	CACCTGC	1 cut(s)	340
PdmI	GAANNNNTTC	1 cut(s)	179
PflMI	CCANNNNNTGG	1 cut(s)	247
PkrI	GCNGC	7 cut(s)	165, 210, 233, 371, 392, 403, 592
Ppu21I	YACGTR	1 cut(s)	244
Psp6I	CCWGG	2 cut(s)	71, 489
PspFI	CCCAGC	1 cut(s)	35
PspGI	CCWGG	2 cut(s)	71, 489
PspN4I	GGNNCC	4 cut(s)	200, 238, 263, 448
PspPI	GGNCC	2 cut(s)	75, 534
PsuI	RGATCY	1 cut(s)	288
RsaI	GTAC	4 cut(s)	191, 246, 263, 568
RsaNI	GTAC	4 cut(s)	190, 245, 262, 567
SatI	GCNGC	7 cut(s)	164, 209, 232, 370, 391, 402, 591
Sau3AI	GATC	3 cut(s)	81, 288, 576
Sau96I	GGNCC	2 cut(s)	75, 534
ScrFI	CCNGG	2 cut(s)	73, 491
SduI	GDGCHC	2 cut(s)	241, 417
SetI	ASST	7 cut(s)	47, 182, 195, 246, 267, 334, 403
SfaNI	GCATC	1 cut(s)	48
SsiI	CCGC	6 cut(s)	163, 166, 209, 234, 350, 391
StyD4I	CCNGG	2 cut(s)	71, 489
TaaI	ACNGT	1 cut(s)	96
TaiI	ACGT	1 cut(s)	246
TaqI	TCGA	3 cut(s)	267, 375, 397
TauI	GCSGC	3 cut(s)	166, 211, 393
TseI	GCWGC	4 cut(s)	231, 369, 401, 590
TspDTI	ATGAA	1 cut(s)	165
Van91I	CCANNNNNTGG	1 cut(s)	247
XmnI	GAANNNNTTC	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.